Cow genome map
Conread name: | Spl1-SPL01C050096 |
Conread position: | 1-206 |
Cow position: | chr29:15894063-15893858 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 152 |
Alignm E-value: | 5e-35 |
Alignm gaps (pig, cow): | 96, 169 |
Conread position: | 1-264 |
Cow position: | chr29:30259796-30259535 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 180 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 246, 29 |
Conread position: | 1-293 |
Cow position: | chr29:2840590-2840294 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 211, 183 |
Conread position: | 1-302 |
Cow position: | chr29:15968074-15967773 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 213 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-330 |
Cow position: | chr29:8774519-8774196 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 204 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 246, 65 |
Conread position: | 1-331 |
Cow position: | chr29:18856161-18855832 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 109 |
Conread position: | 1-331 |
Cow position: | chr29:35815188-35814857 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 185 |
Conread position: | 1-331 |
Cow position: | chr29:43408832-43408506 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 227 |
Alignm E-value: | 8.99999e-40 |
Alignm gaps (pig, cow): | 215, 75 |
Conread position: | 1-338 |
Cow position: | chr29:37164923-37165259 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 228 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 71, 31 |
Conread position: | 1-345 |
Cow position: | chr29:9642974-9642626 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 210, 183 |
Conread position: | 1-349 |
Cow position: | chr29:7845169-7845522 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 184, 316 |
Conread position: | 1-350 |
Cow position: | chr29:31182191-31182539 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 203 |
Conread position: | 1-375 |
Cow position: | chr29:32558967-32558582 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 291 |
Conread position: | 1-383 |
Cow position: | chr29:47665-47255 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 81 |
Conread position: | 1-383 |
Cow position: | chr29:609836-609460 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 112 |
Conread position: | 1-383 |
Cow position: | chr29:5981926-5981526 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 45 |
Conread position: | 1-383 |
Cow position: | chr29:8664304-8664691 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 19 |
Conread position: | 1-383 |
Cow position: | chr29:10823186-10822799 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 219, 131 |
Conread position: | 1-383 |
Cow position: | chr29:13582866-13583262 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 184 |
Conread position: | 1-383 |
Cow position: | chr29:14085338-14084946 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 48 |
Conread position: | 1-383 |
Cow position: | chr29:14210781-14210386 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 183 |
Conread position: | 1-383 |
Cow position: | chr29:14586708-14587101 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 71 |
Conread position: | 1-383 |
Cow position: | chr29:16111166-16111569 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 272 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 184, 16 |
Conread position: | 1-383 |
Cow position: | chr29:19622496-19622099 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 183 |
Conread position: | 1-383 |
Cow position: | chr29:20251952-20252350 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 78 |
Conread position: | 1-383 |
Cow position: | chr29:23976911-23977306 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 99 |
Conread position: | 1-383 |
Cow position: | chr29:25931753-25931347 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 183 |
Conread position: | 1-383 |
Cow position: | chr29:26164039-26163653 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 285, 104 |
Conread position: | 1-383 |
Cow position: | chr29:32286988-32287363 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 244, 101 |
Conread position: | 1-383 |
Cow position: | chr29:34799017-34798626 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 81 |
Conread position: | 1-383 |
Cow position: | chr29:39078918-39078524 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr29:43323347-43323741 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 105 |
Conread position: | 1-383 |
Cow position: | chr29:45205290-45205682 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 244, 183 |
Conread position: | 1-383 |
Cow position: | chr29:45586588-45586198 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 71 |
Conread position: | 1-385 |
Cow position: | chr29:6265487-6265080 (view UCSC Genome Browser custom track) |
Alignm length: | 409 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 182 |
Conread position: | 1-394 |
Cow position: | chr29:646584-646987 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 249, 101 |
Conread position: | 1-394 |
Cow position: | chr29:10647463-10647052 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 108 |
Conread position: | 1-439 |
Cow position: | chr29:40502190-40501736 (view UCSC Genome Browser custom track) |
Alignm length: | 459 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 104 |
Conread position: | 2-331 |
Cow position: | chr29:31096592-31096264 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 224 |
Alignm E-value: | 8e-39 |
Alignm gaps (pig, cow): | 215, 5 |
Conread position: | 2-383 |
Cow position: | chr29:2100637-2101033 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 185, 111 |
Conread position: | 2-383 |
Cow position: | chr29:32540883-32541278 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 84 |
Conread position: | 2-394 |
Cow position: | chr29:38227767-38228175 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 217, 101 |
Conread position: | 3-375 |
Cow position: | chr29:35297621-35297992 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 182 |
Conread position: | 3-382 |
Cow position: | chr29:32891583-32891972 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 163 |
Conread position: | 3-383 |
Cow position: | chr29:5958392-5958773 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 104 |
Conread position: | 7-338 |
Cow position: | chr29:21426231-21425900 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 212, 99 |
Conread position: | 7-383 |
Cow position: | chr29:42803204-42803594 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 212, 176 |
Conread position: | 13-383 |
Cow position: | chr29:19654431-19654810 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 206, 86 |
Conread position: | 44-330 |
Cow position: | chr29:43791253-43791539 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 202 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 173, 142 |
Conread position: | 57-342 |
Cow position: | chr29:13920770-13920484 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 256 |
Conread position: | 72-383 |
Cow position: | chr29:2747573-2747257 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 234 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 167, 112 |
Conread position: | 79-377 |
Cow position: | chr29:27263029-27262722 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 140, 51 |
Conread position: | 82-383 |
Cow position: | chr29:13650925-13651233 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 221 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 134, 101 |
Conread position: | 89-331 |
Cow position: | chr29:14448780-14449012 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 167 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 85, 0 |
Conread position: | 151-383 |
Cow position: | chr29:16023507-16023753 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 176 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 68, 33 |
Conread position: | 160-375 |
Cow position: | chr29:13622899-13622682 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 156 |
Alignm E-value: | 8e-29 |
Alignm gaps (pig, cow): | 57, 24 |
Show alignments to all cow chromosomes.