Cow genome map

Conread name: Spl1-SPL01C050096

Conread position: 1-206
Cow position: chr29:15894063-15893858 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 96, 169

Conread position: 1-264
Cow position: chr29:30259796-30259535 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 246, 29

Conread position: 1-293
Cow position: chr29:2840590-2840294 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 183

Conread position: 1-302
Cow position: chr29:15968074-15967773 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 216, 183

Conread position: 1-330
Cow position: chr29:8774519-8774196 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 204
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 246, 65

Conread position: 1-331
Cow position: chr29:18856161-18855832 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 109

Conread position: 1-331
Cow position: chr29:35815188-35814857 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 185

Conread position: 1-331
Cow position: chr29:43408832-43408506 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 215, 75

Conread position: 1-338
Cow position: chr29:37164923-37165259 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 228
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 71, 31

Conread position: 1-345
Cow position: chr29:9642974-9642626 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 183

Conread position: 1-349
Cow position: chr29:7845169-7845522 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 316

Conread position: 1-350
Cow position: chr29:31182191-31182539 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 203

Conread position: 1-375
Cow position: chr29:32558967-32558582 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 291

Conread position: 1-383
Cow position: chr29:47665-47255 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 81

Conread position: 1-383
Cow position: chr29:609836-609460 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 112

Conread position: 1-383
Cow position: chr29:5981926-5981526 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 45

Conread position: 1-383
Cow position: chr29:8664304-8664691 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 19

Conread position: 1-383
Cow position: chr29:10823186-10822799 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 131

Conread position: 1-383
Cow position: chr29:13582866-13583262 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 184

Conread position: 1-383
Cow position: chr29:14085338-14084946 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 48

Conread position: 1-383
Cow position: chr29:14210781-14210386 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 183

Conread position: 1-383
Cow position: chr29:14586708-14587101 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 71

Conread position: 1-383
Cow position: chr29:16111166-16111569 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 272
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 184, 16

Conread position: 1-383
Cow position: chr29:19622496-19622099 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 183

Conread position: 1-383
Cow position: chr29:20251952-20252350 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 78

Conread position: 1-383
Cow position: chr29:23976911-23977306 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 99

Conread position: 1-383
Cow position: chr29:25931753-25931347 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 183

Conread position: 1-383
Cow position: chr29:26164039-26163653 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 104

Conread position: 1-383
Cow position: chr29:32286988-32287363 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 101

Conread position: 1-383
Cow position: chr29:34799017-34798626 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 81

Conread position: 1-383
Cow position: chr29:39078918-39078524 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr29:43323347-43323741 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 105

Conread position: 1-383
Cow position: chr29:45205290-45205682 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 183

Conread position: 1-383
Cow position: chr29:45586588-45586198 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 71

Conread position: 1-385
Cow position: chr29:6265487-6265080 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 182

Conread position: 1-394
Cow position: chr29:646584-646987 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 101

Conread position: 1-394
Cow position: chr29:10647463-10647052 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 108

Conread position: 1-439
Cow position: chr29:40502190-40501736 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 104

Conread position: 2-331
Cow position: chr29:31096592-31096264 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 224
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 215, 5

Conread position: 2-383
Cow position: chr29:2100637-2101033 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 111

Conread position: 2-383
Cow position: chr29:32540883-32541278 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 84

Conread position: 2-394
Cow position: chr29:38227767-38228175 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 101

Conread position: 3-375
Cow position: chr29:35297621-35297992 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 182

Conread position: 3-382
Cow position: chr29:32891583-32891972 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 163

Conread position: 3-383
Cow position: chr29:5958392-5958773 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 104

Conread position: 7-338
Cow position: chr29:21426231-21425900 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 99

Conread position: 7-383
Cow position: chr29:42803204-42803594 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 176

Conread position: 13-383
Cow position: chr29:19654431-19654810 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 86

Conread position: 44-330
Cow position: chr29:43791253-43791539 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 173, 142

Conread position: 57-342
Cow position: chr29:13920770-13920484 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 256

Conread position: 72-383
Cow position: chr29:2747573-2747257 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 167, 112

Conread position: 79-377
Cow position: chr29:27263029-27262722 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 51

Conread position: 82-383
Cow position: chr29:13650925-13651233 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 134, 101

Conread position: 89-331
Cow position: chr29:14448780-14449012 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 151-383
Cow position: chr29:16023507-16023753 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 68, 33

Conread position: 160-375
Cow position: chr29:13622899-13622682 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 57, 24

Show alignments to all cow chromosomes.