Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-207 |
| Cow position: | chr3:36118366-36118570 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-207 |
| Cow position: | chr3:40339410-40339205 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 1-212 |
| Cow position: | chr3:30331783-30331572 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-249 |
| Cow position: | chr3:41211031-41210783 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 208, 183 |
| Conread position: | 1-258 |
| Cow position: | chr3:45773699-45773446 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 246, 38 |
| Conread position: | 1-284 |
| Cow position: | chr3:49678505-49678793 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 22 |
| Conread position: | 1-323 |
| Cow position: | chr3:40342838-40343146 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 150, 29 |
| Conread position: | 1-323 |
| Cow position: | chr3:50126930-50126587 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 57 |
| Conread position: | 1-326 |
| Cow position: | chr3:20381245-20381571 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 1-330 |
| Cow position: | chr3:58948318-58948659 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-331 |
| Cow position: | chr3:2918165-2918496 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-331 |
| Cow position: | chr3:4286787-4287118 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-331 |
| Cow position: | chr3:7158022-7157691 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-331 |
| Cow position: | chr3:18860115-18860446 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-331 |
| Cow position: | chr3:27919125-27919456 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-331 |
| Cow position: | chr3:37969744-37970075 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-331 |
| Cow position: | chr3:63915413-63915082 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-331 |
| Cow position: | chr3:68873051-68872717 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 96, 84 |
| Conread position: | 1-365 |
| Cow position: | chr3:68699261-68698902 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 183 |
| Conread position: | 1-373 |
| Cow position: | chr3:63002841-63002455 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-375 |
| Cow position: | chr3:48842952-48843340 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 78 |
| Conread position: | 1-379 |
| Cow position: | chr3:66890261-66889877 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 96, 89 |
| Conread position: | 1-380 |
| Cow position: | chr3:24445376-24444982 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 104 |
| Conread position: | 1-382 |
| Cow position: | chr3:59862077-59862474 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 22 |
| Conread position: | 1-383 |
| Cow position: | chr3:2710166-2709773 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 1-383 |
| Cow position: | chr3:2907067-2906677 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 24 |
| Conread position: | 1-383 |
| Cow position: | chr3:5884246-5884629 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr3:6686513-6686905 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 36 |
| Conread position: | 1-383 |
| Cow position: | chr3:6783071-6783462 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 271 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 215, 113 |
| Conread position: | 1-383 |
| Cow position: | chr3:19800474-19800078 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 182 |
| Conread position: | 1-383 |
| Cow position: | chr3:19879357-19879740 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 90 |
| Conread position: | 1-383 |
| Cow position: | chr3:19939595-19939987 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 207 |
| Conread position: | 1-383 |
| Cow position: | chr3:23289632-23289236 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 183 |
| Conread position: | 1-383 |
| Cow position: | chr3:30315266-30315655 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 81 |
| Conread position: | 1-383 |
| Cow position: | chr3:32622340-32621945 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 121, 184 |
| Conread position: | 1-383 |
| Cow position: | chr3:40824094-40824487 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 81 |
| Conread position: | 1-383 |
| Cow position: | chr3:45033450-45033837 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 183 |
| Conread position: | 1-383 |
| Cow position: | chr3:47080710-47080316 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 183 |
| Conread position: | 1-383 |
| Cow position: | chr3:48229768-48229378 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 20 |
| Conread position: | 1-383 |
| Cow position: | chr3:49544508-49544111 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 184 |
| Conread position: | 1-383 |
| Cow position: | chr3:53516314-53516698 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 184 |
| Conread position: | 1-383 |
| Cow position: | chr3:64822799-64823198 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 63, 194 |
| Conread position: | 1-383 |
| Cow position: | chr3:66620886-66621277 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 145 |
| Conread position: | 1-383 |
| Cow position: | chr3:70887837-70888234 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 96, 124 |
| Conread position: | 1-383 |
| Cow position: | chr3:72630778-72631159 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 97 |
| Conread position: | 1-383 |
| Cow position: | chr3:75040458-75040063 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr3:78026715-78026315 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 20 |
| Conread position: | 1-384 |
| Cow position: | chr3:48058652-48058266 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 157 |
| Conread position: | 1-386 |
| Cow position: | chr3:64357088-64356701 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 57 |
| Conread position: | 1-394 |
| Cow position: | chr3:18812211-18812609 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 81 |
| Conread position: | 1-394 |
| Cow position: | chr3:21181998-21181586 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-394 |
| Cow position: | chr3:29579329-29579736 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 45 |
| Conread position: | 1-394 |
| Cow position: | chr3:34030202-34029817 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 1-394 |
| Cow position: | chr3:57484023-57483619 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 43 |
| Conread position: | 2-292 |
| Cow position: | chr3:18355569-18355277 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 102 |
| Conread position: | 2-383 |
| Cow position: | chr3:12679139-12678743 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 150, 185 |
| Conread position: | 3-336 |
| Cow position: | chr3:31420042-31420378 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 84 |
| Conread position: | 3-383 |
| Cow position: | chr3:45975207-45975593 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 181 |
| Conread position: | 3-383 |
| Cow position: | chr3:46503251-46503652 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 159 |
| Conread position: | 3-383 |
| Cow position: | chr3:56339714-56339322 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 181 |
| Conread position: | 3-394 |
| Cow position: | chr3:42447812-42448219 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 178 |
| Conread position: | 7-331 |
| Cow position: | chr3:36863754-36863429 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 177 |
| Conread position: | 7-383 |
| Cow position: | chr3:77424343-77424719 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 142 |
| Conread position: | 15-370 |
| Cow position: | chr3:3841094-3840719 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 169 |
| Conread position: | 24-394 |
| Cow position: | chr3:10240382-10240771 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 160 |
| Conread position: | 34-383 |
| Cow position: | chr3:30618190-30617826 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 150 |
| Conread position: | 34-383 |
| Cow position: | chr3:64027390-64027041 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 90 |
| Conread position: | 46-383 |
| Cow position: | chr3:24346716-24347056 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 138 |
| Conread position: | 56-375 |
| Cow position: | chr3:7169957-7170289 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 161, 127 |
| Conread position: | 60-383 |
| Cow position: | chr3:11198793-11198452 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 50 |
| Conread position: | 64-372 |
| Cow position: | chr3:15181131-15181441 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 117 |
| Conread position: | 66-331 |
| Cow position: | chr3:4028940-4029205 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 118 |
| Conread position: | 67-383 |
| Cow position: | chr3:79431936-79431610 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 149, 85 |
| Conread position: | 78-383 |
| Cow position: | chr3:49136781-49136475 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 105 |
| Conread position: | 83-383 |
| Cow position: | chr3:4737085-4736788 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 12, 98 |
| Conread position: | 89-394 |
| Cow position: | chr3:37625788-37626106 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 92-429 |
| Cow position: | chr3:79314721-79315070 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 125, 91 |
| Conread position: | 96-375 |
| Cow position: | chr3:2368533-2368251 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 32, 89 |
| Conread position: | 99-331 |
| Cow position: | chr3:34506547-34506314 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 118, 85 |
| Conread position: | 122-383 |
| Cow position: | chr3:56146145-56146410 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 61 |
| Conread position: | 169-383 |
| Cow position: | chr3:74058408-74058625 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 218-405 |
| Cow position: | chr3:15054753-15054556 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 228-383 |
| Cow position: | chr3:7478994-7478825 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 463-585 |
| Cow position: | chr3:20437912-20437790 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.