Cow genome map
Conread name: | Spl1-SPL01C050096 |
Conread position: | 1-291 |
Cow position: | chr4:19006047-19005752 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 182 |
Conread position: | 1-294 |
Cow position: | chr4:18517408-18517702 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-326 |
Cow position: | chr4:18424016-18423690 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 183 |
Conread position: | 1-331 |
Cow position: | chr4:159667-160000 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-331 |
Cow position: | chr4:1930122-1929803 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 238 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 209, 154 |
Conread position: | 1-331 |
Cow position: | chr4:17093357-17093027 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 182 |
Conread position: | 1-365 |
Cow position: | chr4:603524-603885 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 247 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 172, 254 |
Conread position: | 1-372 |
Cow position: | chr4:11110755-11110387 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 213, 183 |
Conread position: | 1-380 |
Cow position: | chr4:1367656-1367269 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 266 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 89, 41 |
Conread position: | 1-380 |
Cow position: | chr4:67681701-67682093 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-381 |
Cow position: | chr4:33596051-33596423 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 263 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 45, 54 |
Conread position: | 1-383 |
Cow position: | chr4:356419-356811 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 161 |
Conread position: | 1-383 |
Cow position: | chr4:529908-530307 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr4:3126301-3126707 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 184, 161 |
Conread position: | 1-383 |
Cow position: | chr4:4416580-4416962 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 182 |
Conread position: | 1-383 |
Cow position: | chr4:5444327-5443929 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr4:12240700-12240315 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 217, 29 |
Conread position: | 1-383 |
Cow position: | chr4:13493828-13494233 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 182 |
Conread position: | 1-383 |
Cow position: | chr4:16057188-16057583 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 70 |
Conread position: | 1-383 |
Cow position: | chr4:17925451-17925063 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 24 |
Conread position: | 1-383 |
Cow position: | chr4:27334222-27334615 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 183 |
Conread position: | 1-383 |
Cow position: | chr4:28832069-28832465 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 213, 133 |
Conread position: | 1-383 |
Cow position: | chr4:31564794-31564401 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 23 |
Conread position: | 1-383 |
Cow position: | chr4:32212678-32213067 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 184 |
Conread position: | 1-383 |
Cow position: | chr4:33072311-33071918 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 182 |
Conread position: | 1-383 |
Cow position: | chr4:36896882-36897277 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr4:43319133-43318737 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr4:44780716-44780322 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr4:57984491-57984890 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 81 |
Conread position: | 1-386 |
Cow position: | chr4:14775951-14776357 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 278 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 90, 272 |
Conread position: | 1-393 |
Cow position: | chr4:18337372-18337768 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-394 |
Cow position: | chr4:12587842-12588248 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 303, 183 |
Conread position: | 1-394 |
Cow position: | chr4:43881615-43882021 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 182 |
Conread position: | 1-394 |
Cow position: | chr4:44726106-44726504 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 104 |
Conread position: | 1-429 |
Cow position: | chr4:10882056-10882505 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 2-394 |
Cow position: | chr4:16639121-16639529 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 182 |
Conread position: | 3-383 |
Cow position: | chr4:6489852-6489461 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 181 |
Conread position: | 7-331 |
Cow position: | chr4:5880677-5880994 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 228 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 210, 84 |
Conread position: | 10-383 |
Cow position: | chr4:27300962-27300581 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 40 |
Conread position: | 26-380 |
Cow position: | chr4:33494125-33494489 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 190, 76 |
Conread position: | 33-247 |
Cow position: | chr4:100263-100049 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 150 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 179, 151 |
Conread position: | 59-380 |
Cow position: | chr4:51042724-51042394 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 126 |
Conread position: | 61-321 |
Cow position: | chr4:41958983-41959247 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 191 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 149, 123 |
Conread position: | 61-330 |
Cow position: | chr4:41955322-41955597 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 191 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 156, 123 |
Conread position: | 66-375 |
Cow position: | chr4:45106032-45106355 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 229 |
Alignm E-value: | 4.00001e-40 |
Alignm gaps (pig, cow): | 151, 118 |
Conread position: | 68-383 |
Cow position: | chr4:14820292-14819958 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 228 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 164, 11 |
Conread position: | 86-339 |
Cow position: | chr4:38929998-38930250 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 173 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 161, 100 |
Conread position: | 96-327 |
Cow position: | chr4:30471836-30472064 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 165 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 121, 23 |
Conread position: | 119-394 |
Cow position: | chr4:69521190-69521453 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 196 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 98, 64 |
Conread position: | 192-394 |
Cow position: | chr4:34178540-34178319 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 158 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 25, 0 |
Conread position: | 196-394 |
Cow position: | chr4:26877079-26876863 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 160 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.