Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-289 |
| Cow position: | chr5:29766489-29766790 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 181 |
| Conread position: | 1-298 |
| Cow position: | chr5:59639386-59639677 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 129, 65 |
| Conread position: | 1-309 |
| Cow position: | chr5:39246206-39245899 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 31 |
| Conread position: | 1-326 |
| Cow position: | chr5:18273354-18273673 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 244, 21 |
| Conread position: | 1-331 |
| Cow position: | chr5:38073636-38073967 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-331 |
| Cow position: | chr5:42505608-42505940 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 312 |
| Conread position: | 1-331 |
| Cow position: | chr5:44460087-44460418 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-331 |
| Cow position: | chr5:45181540-45181209 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-331 |
| Cow position: | chr5:46807916-46808247 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-331 |
| Cow position: | chr5:54861450-54861142 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 22 |
| Conread position: | 1-338 |
| Cow position: | chr5:18401096-18400748 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 105 |
| Conread position: | 1-349 |
| Cow position: | chr5:18121873-18121530 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 64 |
| Conread position: | 1-350 |
| Cow position: | chr5:10775664-10775316 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 109 |
| Conread position: | 1-350 |
| Cow position: | chr5:32947661-32948015 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 186 |
| Conread position: | 1-372 |
| Cow position: | chr5:18664396-18664773 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 315 |
| Conread position: | 1-373 |
| Cow position: | chr5:23959711-23959338 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 181 |
| Conread position: | 1-375 |
| Cow position: | chr5:4757559-4757184 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 1-383 |
| Cow position: | chr5:1341427-1341032 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-383 |
| Cow position: | chr5:2915054-2915450 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 104 |
| Conread position: | 1-383 |
| Cow position: | chr5:3786526-3786927 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 19 |
| Conread position: | 1-383 |
| Cow position: | chr5:3965053-3965447 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 78 |
| Conread position: | 1-383 |
| Cow position: | chr5:4018596-4018194 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 277 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-383 |
| Cow position: | chr5:4069825-4070209 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 117 |
| Conread position: | 1-383 |
| Cow position: | chr5:6154295-6153902 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 138 |
| Conread position: | 1-383 |
| Cow position: | chr5:10842774-10842384 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 209, 227 |
| Conread position: | 1-383 |
| Cow position: | chr5:24099275-24099666 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-383 |
| Cow position: | chr5:27908668-27908268 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 1-383 |
| Cow position: | chr5:31707155-31707563 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 183 |
| Conread position: | 1-383 |
| Cow position: | chr5:33187374-33187738 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 214, 49 |
| Conread position: | 1-383 |
| Cow position: | chr5:37732956-37733347 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 20 |
| Conread position: | 1-383 |
| Cow position: | chr5:41961119-41960736 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 58 |
| Conread position: | 1-383 |
| Cow position: | chr5:46005248-46004855 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 123 |
| Conread position: | 1-383 |
| Cow position: | chr5:46629585-46629178 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 271 |
| Conread position: | 1-383 |
| Cow position: | chr5:46664623-46665018 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 6 |
| Conread position: | 1-383 |
| Cow position: | chr5:47830467-47830077 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 84 |
| Conread position: | 1-383 |
| Cow position: | chr5:48808134-48807738 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr5:49519166-49519561 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 38 |
| Conread position: | 1-383 |
| Cow position: | chr5:55628596-55628992 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr5:57481934-57481538 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr5:58196620-58197016 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr5:59282924-59283317 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 145 |
| Conread position: | 1-383 |
| Cow position: | chr5:64781410-64781015 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 55 |
| Conread position: | 1-383 |
| Cow position: | chr5:73488953-73488559 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 154 |
| Conread position: | 1-386 |
| Cow position: | chr5:45700919-45701318 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 118 |
| Conread position: | 1-393 |
| Cow position: | chr5:32773379-32773778 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-394 |
| Cow position: | chr5:10919430-10919835 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 184 |
| Conread position: | 1-394 |
| Cow position: | chr5:34697208-34697616 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 2-382 |
| Cow position: | chr5:54792031-54791633 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 85 |
| Conread position: | 2-383 |
| Cow position: | chr5:4385848-4386241 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 182 |
| Conread position: | 2-383 |
| Cow position: | chr5:41554725-41554349 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 56 |
| Conread position: | 5-303 |
| Cow position: | chr5:52434164-52434454 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 239, 13 |
| Conread position: | 7-302 |
| Cow position: | chr5:28012263-28012562 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 178 |
| Conread position: | 7-383 |
| Cow position: | chr5:46668569-46668944 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 7 |
| Conread position: | 10-383 |
| Cow position: | chr5:6588409-6588020 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 173, 315 |
| Conread position: | 34-383 |
| Cow position: | chr5:13046089-13046456 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 64 |
| Conread position: | 47-383 |
| Cow position: | chr5:53625259-53624922 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 164, 35 |
| Conread position: | 59-338 |
| Cow position: | chr5:41465736-41466011 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 159, 125 |
| Conread position: | 59-383 |
| Cow position: | chr5:9419406-9419072 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 82-383 |
| Cow position: | chr5:31100738-31100421 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 101 |
| Conread position: | 92-394 |
| Cow position: | chr5:10856120-10855802 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 129-383 |
| Cow position: | chr5:24999252-24998989 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 88, 11 |
| Conread position: | 149-331 |
| Cow position: | chr5:39016789-39016972 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 68, 34 |
| Conread position: | 150-331 |
| Cow position: | chr5:51309101-51308924 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 104, 34 |
| Conread position: | 165-383 |
| Cow position: | chr5:27654584-27654812 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 176-383 |
| Cow position: | chr5:7274629-7274845 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 439-624 |
| Cow position: | chr5:6504121-6503934 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 26 |
Show alignments to all cow chromosomes.