Cow genome map

Conread name: Spl1-SPL01C050096

Conread position: 1-246
Cow position: chr6:16052625-16052871 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 211, 0

Conread position: 1-292
Cow position: chr6:30479847-30480139 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 118

Conread position: 1-298
Cow position: chr6:11724362-11724071 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 215, 20

Conread position: 1-304
Cow position: chr6:6475122-6474813 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 182

Conread position: 1-310
Cow position: chr6:1099413-1099104 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 184

Conread position: 1-323
Cow position: chr6:52693762-52694084 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 81

Conread position: 1-325
Cow position: chr6:13847771-13848096 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 184

Conread position: 1-325
Cow position: chr6:40275833-40276157 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 182

Conread position: 1-331
Cow position: chr6:1404847-1404510 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 317

Conread position: 1-331
Cow position: chr6:1410913-1410576 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 317

Conread position: 1-331
Cow position: chr6:26670120-26669787 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 229

Conread position: 1-331
Cow position: chr6:65821228-65820897 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-336
Cow position: chr6:43999807-44000142 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 148

Conread position: 1-339
Cow position: chr6:27170320-27170659 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 312

Conread position: 1-349
Cow position: chr6:3150009-3150356 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 237
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 242, 183

Conread position: 1-356
Cow position: chr6:16634984-16635347 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 255
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 51, 194

Conread position: 1-372
Cow position: chr6:28133676-28134047 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 53

Conread position: 1-375
Cow position: chr6:2375444-2375820 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 182

Conread position: 1-377
Cow position: chr6:185037-184643 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 274
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 27, 82

Conread position: 1-380
Cow position: chr6:39334124-39333731 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr6:702947-703355 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 197

Conread position: 1-383
Cow position: chr6:3888739-3888365 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 269
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 215, 62

Conread position: 1-383
Cow position: chr6:5949032-5948642 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 183

Conread position: 1-383
Cow position: chr6:7834270-7834657 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 260
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 208, 89

Conread position: 1-383
Cow position: chr6:8202928-8203318 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr6:8760545-8760154 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr6:10644491-10644877 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 57

Conread position: 1-383
Cow position: chr6:12665574-12665177 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 86

Conread position: 1-383
Cow position: chr6:13104803-13105201 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 161

Conread position: 1-383
Cow position: chr6:13310615-13310216 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 183

Conread position: 1-383
Cow position: chr6:13316726-13316330 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 19

Conread position: 1-383
Cow position: chr6:13944653-13945050 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 109

Conread position: 1-383
Cow position: chr6:15140436-15140036 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 187

Conread position: 1-383
Cow position: chr6:15279066-15278673 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr6:17597573-17597167 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 153, 74

Conread position: 1-383
Cow position: chr6:20560361-20559962 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 186

Conread position: 1-383
Cow position: chr6:24239803-24240193 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 157

Conread position: 1-383
Cow position: chr6:25214969-25215345 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 22

Conread position: 1-383
Cow position: chr6:27529259-27528857 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 186

Conread position: 1-383
Cow position: chr6:28105112-28104719 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 11

Conread position: 1-383
Cow position: chr6:30274146-30273754 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 87

Conread position: 1-383
Cow position: chr6:34891379-34890982 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr6:35875971-35875571 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 183

Conread position: 1-383
Cow position: chr6:38271635-38272022 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 46

Conread position: 1-383
Cow position: chr6:39438510-39438906 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr6:40553828-40553433 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 104

Conread position: 1-383
Cow position: chr6:40866572-40866183 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 157

Conread position: 1-383
Cow position: chr6:43618461-43618862 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 274
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr6:44149811-44149416 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr6:50634692-50635095 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 288
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 145, 66

Conread position: 1-383
Cow position: chr6:51086688-51087082 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-383
Cow position: chr6:51715285-51715668 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 81

Conread position: 1-383
Cow position: chr6:55542503-55542123 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 81

Conread position: 1-383
Cow position: chr6:58027420-58027815 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 82

Conread position: 1-383
Cow position: chr6:58065479-58065878 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 37

Conread position: 1-383
Cow position: chr6:58601226-58601623 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 29

Conread position: 1-383
Cow position: chr6:66232559-66232949 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 184

Conread position: 1-383
Cow position: chr6:68027667-68028056 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 316

Conread position: 1-384
Cow position: chr6:3276629-3276230 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 1-384
Cow position: chr6:28490823-28490427 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 315

Conread position: 1-394
Cow position: chr6:17046804-17047208 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 69

Conread position: 2-331
Cow position: chr6:46573861-46573531 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 184

Conread position: 2-383
Cow position: chr6:4259000-4258615 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 260
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 153, 94

Conread position: 2-383
Cow position: chr6:65842371-65842756 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 181

Conread position: 2-385
Cow position: chr6:538737-539114 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 251
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 77, 30

Conread position: 3-383
Cow position: chr6:330718-330324 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 27

Conread position: 3-383
Cow position: chr6:6567337-6567725 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 183

Conread position: 3-383
Cow position: chr6:28169651-28170042 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 181

Conread position: 6-383
Cow position: chr6:914381-914774 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 157

Conread position: 7-309
Cow position: chr6:59918324-59918015 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 177

Conread position: 7-384
Cow position: chr6:3487670-3487293 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 13

Conread position: 9-383
Cow position: chr6:65928718-65929103 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 262
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 208, 62

Conread position: 18-244
Cow position: chr6:25794051-25793825 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 197, 166

Conread position: 39-331
Cow position: chr6:50646401-50646108 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 178, 147

Conread position: 42-331
Cow position: chr6:19336957-19336665 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 46

Conread position: 48-383
Cow position: chr6:18973616-18973276 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 135

Conread position: 53-383
Cow position: chr6:10339799-10339475 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 220
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 251, 51

Conread position: 85-383
Cow position: chr6:36527130-36527442 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 26

Conread position: 90-379
Cow position: chr6:21836359-21836052 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 216
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 124, 93

Conread position: 96-383
Cow position: chr6:11871805-11871505 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 121, 87

Conread position: 122-383
Cow position: chr6:1535711-1535435 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 95, 64

Conread position: 141-383
Cow position: chr6:28275893-28276150 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 76, 43

Conread position: 150-383
Cow position: chr6:29312396-29312642 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 66, 34

Conread position: 151-383
Cow position: chr6:50713-50465 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 67, 33

Conread position: 161-375
Cow position: chr6:9263997-9264221 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 23

Conread position: 174-383
Cow position: chr6:10250682-10250465 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 42, 0

Conread position: 177-375
Cow position: chr6:45586881-45587081 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 136

Show alignments to all cow chromosomes.