Cow genome map
Conread name: | Spl1-SPL01C050096 |
Conread position: | 1-246 |
Cow position: | chr6:16052625-16052871 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 179 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 211, 0 |
Conread position: | 1-292 |
Cow position: | chr6:30479847-30480139 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 118 |
Conread position: | 1-298 |
Cow position: | chr6:11724362-11724071 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 220 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 215, 20 |
Conread position: | 1-304 |
Cow position: | chr6:6475122-6474813 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 182 |
Conread position: | 1-310 |
Cow position: | chr6:1099413-1099104 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 184 |
Conread position: | 1-323 |
Cow position: | chr6:52693762-52694084 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 81 |
Conread position: | 1-325 |
Cow position: | chr6:13847771-13848096 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 184 |
Conread position: | 1-325 |
Cow position: | chr6:40275833-40276157 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 182 |
Conread position: | 1-331 |
Cow position: | chr6:1404847-1404510 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 317 |
Conread position: | 1-331 |
Cow position: | chr6:1410913-1410576 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 317 |
Conread position: | 1-331 |
Cow position: | chr6:26670120-26669787 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 229 |
Conread position: | 1-331 |
Cow position: | chr6:65821228-65820897 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-336 |
Cow position: | chr6:43999807-44000142 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 148 |
Conread position: | 1-339 |
Cow position: | chr6:27170320-27170659 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 213, 312 |
Conread position: | 1-349 |
Cow position: | chr6:3150009-3150356 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 237 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 242, 183 |
Conread position: | 1-356 |
Cow position: | chr6:16634984-16635347 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 255 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 51, 194 |
Conread position: | 1-372 |
Cow position: | chr6:28133676-28134047 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 53 |
Conread position: | 1-375 |
Cow position: | chr6:2375444-2375820 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 182 |
Conread position: | 1-377 |
Cow position: | chr6:185037-184643 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 274 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 27, 82 |
Conread position: | 1-380 |
Cow position: | chr6:39334124-39333731 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr6:702947-703355 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 197 |
Conread position: | 1-383 |
Cow position: | chr6:3888739-3888365 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 269 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 215, 62 |
Conread position: | 1-383 |
Cow position: | chr6:5949032-5948642 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 183 |
Conread position: | 1-383 |
Cow position: | chr6:7834270-7834657 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 260 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 208, 89 |
Conread position: | 1-383 |
Cow position: | chr6:8202928-8203318 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr6:8760545-8760154 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr6:10644491-10644877 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 57 |
Conread position: | 1-383 |
Cow position: | chr6:12665574-12665177 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 86 |
Conread position: | 1-383 |
Cow position: | chr6:13104803-13105201 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 161 |
Conread position: | 1-383 |
Cow position: | chr6:13310615-13310216 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 221, 183 |
Conread position: | 1-383 |
Cow position: | chr6:13316726-13316330 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 19 |
Conread position: | 1-383 |
Cow position: | chr6:13944653-13945050 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 109 |
Conread position: | 1-383 |
Cow position: | chr6:15140436-15140036 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 187 |
Conread position: | 1-383 |
Cow position: | chr6:15279066-15278673 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr6:17597573-17597167 (view UCSC Genome Browser custom track) |
Alignm length: | 409 |
Alignm identity: | 280 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 153, 74 |
Conread position: | 1-383 |
Cow position: | chr6:20560361-20559962 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 145, 186 |
Conread position: | 1-383 |
Cow position: | chr6:24239803-24240193 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 157 |
Conread position: | 1-383 |
Cow position: | chr6:25214969-25215345 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 22 |
Conread position: | 1-383 |
Cow position: | chr6:27529259-27528857 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 186 |
Conread position: | 1-383 |
Cow position: | chr6:28105112-28104719 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 11 |
Conread position: | 1-383 |
Cow position: | chr6:30274146-30273754 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 244, 87 |
Conread position: | 1-383 |
Cow position: | chr6:34891379-34890982 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr6:35875971-35875571 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 217, 183 |
Conread position: | 1-383 |
Cow position: | chr6:38271635-38272022 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 46 |
Conread position: | 1-383 |
Cow position: | chr6:39438510-39438906 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr6:40553828-40553433 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 213, 104 |
Conread position: | 1-383 |
Cow position: | chr6:40866572-40866183 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 217, 157 |
Conread position: | 1-383 |
Cow position: | chr6:43618461-43618862 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 274 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr6:44149811-44149416 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr6:50634692-50635095 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 288 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 145, 66 |
Conread position: | 1-383 |
Cow position: | chr6:51086688-51087082 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-383 |
Cow position: | chr6:51715285-51715668 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 81 |
Conread position: | 1-383 |
Cow position: | chr6:55542503-55542123 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 213, 81 |
Conread position: | 1-383 |
Cow position: | chr6:58027420-58027815 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 82 |
Conread position: | 1-383 |
Cow position: | chr6:58065479-58065878 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 37 |
Conread position: | 1-383 |
Cow position: | chr6:58601226-58601623 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 29 |
Conread position: | 1-383 |
Cow position: | chr6:66232559-66232949 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 184 |
Conread position: | 1-383 |
Cow position: | chr6:68027667-68028056 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 185, 316 |
Conread position: | 1-384 |
Cow position: | chr6:3276629-3276230 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 183 |
Conread position: | 1-384 |
Cow position: | chr6:28490823-28490427 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 184, 315 |
Conread position: | 1-394 |
Cow position: | chr6:17046804-17047208 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 69 |
Conread position: | 2-331 |
Cow position: | chr6:46573861-46573531 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 184 |
Conread position: | 2-383 |
Cow position: | chr6:4259000-4258615 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 260 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 153, 94 |
Conread position: | 2-383 |
Cow position: | chr6:65842371-65842756 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 249, 181 |
Conread position: | 2-385 |
Cow position: | chr6:538737-539114 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 251 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 77, 30 |
Conread position: | 3-383 |
Cow position: | chr6:330718-330324 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 182, 27 |
Conread position: | 3-383 |
Cow position: | chr6:6567337-6567725 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 183 |
Conread position: | 3-383 |
Cow position: | chr6:28169651-28170042 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 181 |
Conread position: | 6-383 |
Cow position: | chr6:914381-914774 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 213, 157 |
Conread position: | 7-309 |
Cow position: | chr6:59918324-59918015 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 210, 177 |
Conread position: | 7-384 |
Cow position: | chr6:3487670-3487293 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 212, 13 |
Conread position: | 9-383 |
Cow position: | chr6:65928718-65929103 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 262 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 208, 62 |
Conread position: | 18-244 |
Cow position: | chr6:25794051-25793825 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 170 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 197, 166 |
Conread position: | 39-331 |
Cow position: | chr6:50646401-50646108 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 211 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 178, 147 |
Conread position: | 42-331 |
Cow position: | chr6:19336957-19336665 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 199 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 20, 46 |
Conread position: | 48-383 |
Cow position: | chr6:18973616-18973276 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 135 |
Conread position: | 53-383 |
Cow position: | chr6:10339799-10339475 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 220 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 251, 51 |
Conread position: | 85-383 |
Cow position: | chr6:36527130-36527442 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 26 |
Conread position: | 90-379 |
Cow position: | chr6:21836359-21836052 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 216 |
Alignm E-value: | 5e-31 |
Alignm gaps (pig, cow): | 124, 93 |
Conread position: | 96-383 |
Cow position: | chr6:11871805-11871505 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 214 |
Alignm E-value: | 9e-36 |
Alignm gaps (pig, cow): | 121, 87 |
Conread position: | 122-383 |
Cow position: | chr6:1535711-1535435 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 199 |
Alignm E-value: | 8e-35 |
Alignm gaps (pig, cow): | 95, 64 |
Conread position: | 141-383 |
Cow position: | chr6:28275893-28276150 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 183 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 76, 43 |
Conread position: | 150-383 |
Cow position: | chr6:29312396-29312642 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 183 |
Alignm E-value: | 9e-36 |
Alignm gaps (pig, cow): | 66, 34 |
Conread position: | 151-383 |
Cow position: | chr6:50713-50465 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 182 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 67, 33 |
Conread position: | 161-375 |
Cow position: | chr6:9263997-9264221 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 157 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 56, 23 |
Conread position: | 174-383 |
Cow position: | chr6:10250682-10250465 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 167 |
Alignm E-value: | 4.00001e-40 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 177-375 |
Cow position: | chr6:45586881-45587081 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 143 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 40, 136 |
Show alignments to all cow chromosomes.