Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-251 |
| Cow position: | chr7:49604587-49604840 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 1-286 |
| Cow position: | chr7:445504-445229 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1-286 |
| Cow position: | chr7:33405404-33405120 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 104 |
| Conread position: | 1-321 |
| Cow position: | chr7:19269592-19269278 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 63 |
| Conread position: | 1-323 |
| Cow position: | chr7:995352-995679 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 185 |
| Conread position: | 1-323 |
| Cow position: | chr7:68481390-68481706 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 217, 80 |
| Conread position: | 1-325 |
| Cow position: | chr7:25440346-25440664 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 209, 58 |
| Conread position: | 1-328 |
| Cow position: | chr7:20514940-20514612 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-331 |
| Cow position: | chr7:6720980-6721313 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-337 |
| Cow position: | chr7:67429408-67429747 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 13 |
| Conread position: | 1-339 |
| Cow position: | chr7:11447395-11447734 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 183 |
| Conread position: | 1-345 |
| Cow position: | chr7:29471295-29471638 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 169 |
| Conread position: | 1-372 |
| Cow position: | chr7:8144404-8144013 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 190 |
| Conread position: | 1-375 |
| Cow position: | chr7:65811668-65812045 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 90 |
| Conread position: | 1-376 |
| Cow position: | chr7:27787471-27787855 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 88 |
| Conread position: | 1-377 |
| Cow position: | chr7:63386563-63386960 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 183 |
| Conread position: | 1-379 |
| Cow position: | chr7:20774496-20774106 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 209, 183 |
| Conread position: | 1-380 |
| Cow position: | chr7:545679-546073 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 314 |
| Conread position: | 1-383 |
| Cow position: | chr7:3156300-3156700 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 190 |
| Conread position: | 1-383 |
| Cow position: | chr7:5309272-5308882 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 1-383 |
| Cow position: | chr7:6647821-6647433 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 96 |
| Conread position: | 1-383 |
| Cow position: | chr7:11463210-11462817 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 227 |
| Conread position: | 1-383 |
| Cow position: | chr7:14138760-14138363 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr7:21126826-21126430 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 182 |
| Conread position: | 1-383 |
| Cow position: | chr7:21234177-21233776 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 186 |
| Conread position: | 1-383 |
| Cow position: | chr7:21986264-21986649 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 1-383 |
| Cow position: | chr7:24807619-24807241 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 81 |
| Conread position: | 1-383 |
| Cow position: | chr7:27101458-27101058 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 161 |
| Conread position: | 1-383 |
| Cow position: | chr7:30118703-30118307 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 34, 193 |
| Conread position: | 1-383 |
| Cow position: | chr7:33332402-33332791 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 54 |
| Conread position: | 1-383 |
| Cow position: | chr7:34486752-34487146 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 1-383 |
| Cow position: | chr7:38397651-38398048 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-383 |
| Cow position: | chr7:39792606-39793001 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr7:42870979-42871375 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 35 |
| Conread position: | 1-383 |
| Cow position: | chr7:45948305-45947907 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 81 |
| Conread position: | 1-383 |
| Cow position: | chr7:48635266-48635667 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 52 |
| Conread position: | 1-383 |
| Cow position: | chr7:48805901-48805501 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr7:51015101-51015494 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-383 |
| Cow position: | chr7:54643655-54643261 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 184 |
| Conread position: | 1-383 |
| Cow position: | chr7:58994430-58994817 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 81 |
| Conread position: | 1-383 |
| Cow position: | chr7:59679684-59680085 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 101 |
| Conread position: | 1-383 |
| Cow position: | chr7:64240173-64239772 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 1-383 |
| Cow position: | chr7:67799671-67800055 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 20 |
| Conread position: | 1-394 |
| Cow position: | chr7:1371809-1371398 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 38 |
| Conread position: | 1-394 |
| Cow position: | chr7:21929986-21930383 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 16 |
| Conread position: | 2-324 |
| Cow position: | chr7:46901236-46900922 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 45 |
| Conread position: | 2-331 |
| Cow position: | chr7:16037-15706 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 182 |
| Conread position: | 2-366 |
| Cow position: | chr7:23837409-23837776 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 3-379 |
| Cow position: | chr7:20798605-20798214 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 182 |
| Conread position: | 3-384 |
| Cow position: | chr7:525814-526204 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 181 |
| Conread position: | 7-383 |
| Cow position: | chr7:34150149-34150535 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 91 |
| Conread position: | 9-379 |
| Cow position: | chr7:20785130-20784747 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 21 |
| Conread position: | 13-383 |
| Cow position: | chr7:19989876-19990249 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 17 |
| Conread position: | 14-323 |
| Cow position: | chr7:29369171-29368864 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 63 |
| Conread position: | 16-383 |
| Cow position: | chr7:39554638-39554258 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 64, 305 |
| Conread position: | 24-383 |
| Cow position: | chr7:10430564-10430191 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 160 |
| Conread position: | 25-325 |
| Cow position: | chr7:33312090-33311789 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 192, 158 |
| Conread position: | 49-383 |
| Cow position: | chr7:68333830-68334175 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 52 |
| Conread position: | 67-383 |
| Cow position: | chr7:52763179-52763513 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 16, 118 |
| Conread position: | 71-373 |
| Cow position: | chr7:58376968-58376666 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 73-383 |
| Cow position: | chr7:66905631-66905954 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 107-339 |
| Cow position: | chr7:49829684-49829447 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 110, 77 |
| Conread position: | 111-383 |
| Cow position: | chr7:24878927-24878649 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 108, 50 |
| Conread position: | 115-335 |
| Cow position: | chr7:6630351-6630130 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 102, 69 |
| Conread position: | 115-370 |
| Cow position: | chr7:58874996-58875249 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 102, 68 |
| Conread position: | 128-383 |
| Cow position: | chr7:5261962-5261692 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 83, 56 |
| Conread position: | 180-383 |
| Cow position: | chr7:59684812-59685018 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 462-626 |
| Cow position: | chr7:25393087-25393252 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 10, 25 |
Show alignments to all cow chromosomes.