Cow genome map
| Conread name: | Spl1-SPL01C050096 |
| Conread position: | 1-212 |
| Cow position: | chr9:6829640-6829433 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-321 |
| Cow position: | chr9:2053437-2053752 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 219, 20 |
| Conread position: | 1-325 |
| Cow position: | chr9:1075542-1075215 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 186, 313 |
| Conread position: | 1-325 |
| Cow position: | chr9:3148596-3148273 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-325 |
| Cow position: | chr9:17063714-17063383 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-326 |
| Cow position: | chr9:64015966-64015641 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-330 |
| Cow position: | chr9:25903185-25903513 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 184 |
| Conread position: | 1-331 |
| Cow position: | chr9:25035037-25034705 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 312 |
| Conread position: | 1-331 |
| Cow position: | chr9:28440483-28440814 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 1-331 |
| Cow position: | chr9:35316190-35315874 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 219, 98 |
| Conread position: | 1-331 |
| Cow position: | chr9:50791387-50791718 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 88 |
| Conread position: | 1-338 |
| Cow position: | chr9:51211355-51211693 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-339 |
| Cow position: | chr9:2171722-2172067 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-339 |
| Cow position: | chr9:34722580-34722915 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 79 |
| Conread position: | 1-340 |
| Cow position: | chr9:130512-130153 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 108, 46 |
| Conread position: | 1-372 |
| Cow position: | chr9:17305302-17304917 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 1-379 |
| Cow position: | chr9:4533170-4533560 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 58 |
| Conread position: | 1-379 |
| Cow position: | chr9:4943136-4942746 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 1-380 |
| Cow position: | chr9:51181510-51181110 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 1-381 |
| Cow position: | chr9:27035358-27035751 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 70 |
| Conread position: | 1-381 |
| Cow position: | chr9:28022479-28022874 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 183 |
| Conread position: | 1-383 |
| Cow position: | chr9:651339-650957 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 104 |
| Conread position: | 1-383 |
| Cow position: | chr9:1251322-1250930 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 164, 319 |
| Conread position: | 1-383 |
| Cow position: | chr9:1980947-1981343 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-383 |
| Cow position: | chr9:3543536-3543920 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 66 |
| Conread position: | 1-383 |
| Cow position: | chr9:5004650-5005039 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 9 |
| Conread position: | 1-383 |
| Cow position: | chr9:5515094-5515490 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 83 |
| Conread position: | 1-383 |
| Cow position: | chr9:6249975-6250369 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 144 |
| Conread position: | 1-383 |
| Cow position: | chr9:7061406-7061013 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 1-383 |
| Cow position: | chr9:9013776-9014154 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 75 |
| Conread position: | 1-383 |
| Cow position: | chr9:16176447-16176839 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 56 |
| Conread position: | 1-383 |
| Cow position: | chr9:22431952-22432343 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 47 |
| Conread position: | 1-383 |
| Cow position: | chr9:25187783-25188170 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 1-383 |
| Cow position: | chr9:28678645-28679042 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 183 |
| Conread position: | 1-383 |
| Cow position: | chr9:29027533-29027141 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 1-383 |
| Cow position: | chr9:30673041-30673445 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr9:31808257-31808647 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 48 |
| Conread position: | 1-383 |
| Cow position: | chr9:32969626-32970017 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 24 |
| Conread position: | 1-383 |
| Cow position: | chr9:37970521-37970137 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 183 |
| Conread position: | 1-383 |
| Cow position: | chr9:42310361-42310748 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 13 |
| Conread position: | 1-383 |
| Cow position: | chr9:44818848-44819218 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 47 |
| Conread position: | 1-383 |
| Cow position: | chr9:47002868-47003256 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 183 |
| Conread position: | 1-383 |
| Cow position: | chr9:59482116-59481726 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 20 |
| Conread position: | 1-383 |
| Cow position: | chr9:59536772-59537165 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 43 |
| Conread position: | 1-383 |
| Cow position: | chr9:60277340-60276948 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 183 |
| Conread position: | 1-394 |
| Cow position: | chr9:10322479-10322885 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 182 |
| Conread position: | 1-394 |
| Cow position: | chr9:10937272-10937679 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 1-394 |
| Cow position: | chr9:22654248-22654660 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 38 |
| Conread position: | 1-394 |
| Cow position: | chr9:29628074-29627673 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 29 |
| Conread position: | 2-338 |
| Cow position: | chr9:8166212-8165868 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 188 |
| Conread position: | 2-383 |
| Cow position: | chr9:37162137-37161742 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 182 |
| Conread position: | 3-375 |
| Cow position: | chr9:780128-779759 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 73 |
| Conread position: | 5-339 |
| Cow position: | chr9:25633326-25633002 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 212, 128 |
| Conread position: | 7-324 |
| Cow position: | chr9:7003486-7003804 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 212, 75 |
| Conread position: | 10-345 |
| Cow position: | chr9:43664486-43664813 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 94 |
| Conread position: | 10-383 |
| Cow position: | chr9:45874018-45874408 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 305 |
| Conread position: | 35-267 |
| Cow position: | chr9:239783-239551 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 56-383 |
| Cow position: | chr9:21410023-21410367 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 127 |
| Conread position: | 66-394 |
| Cow position: | chr9:3804284-3804635 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 118 |
| Conread position: | 67-383 |
| Cow position: | chr9:24981178-24980854 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 52 |
| Conread position: | 71-331 |
| Cow position: | chr9:16629924-16629663 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 146, 115 |
| Conread position: | 72-383 |
| Cow position: | chr9:3727343-3727673 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 73-339 |
| Cow position: | chr9:6977084-6977342 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 148, 110 |
| Conread position: | 83-359 |
| Cow position: | chr9:30435327-30435607 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 105-383 |
| Cow position: | chr9:59427811-59428080 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 111, 76 |
| Conread position: | 124-383 |
| Cow position: | chr9:27782982-27783258 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 93, 60 |
| Conread position: | 132-375 |
| Cow position: | chr9:30827540-30827799 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 179-383 |
| Cow position: | chr9:1995540-1995320 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 202-376 |
| Cow position: | chr9:1637540-1637717 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 216-383 |
| Cow position: | chr9:3372401-3372234 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 46 |
Show alignments to all cow chromosomes.