Cow genome map

Conread name: Spl1-SPL01E050073

Conread position: 22-638
Cow position: chr21:641868-641243 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 86

Conread position: 26-257
Cow position: chr21:11182827-11182606 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 28

Conread position: 26-656
Cow position: chr21:23587153-23586501 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 78

Conread position: 34-349
Cow position: chr21:742547-742245 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 226
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 10, 80

Conread position: 34-489
Cow position: chr21:42841314-42841788 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 320
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 28, 294

Conread position: 34-711
Cow position: chr21:27229533-27230208 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 14

Conread position: 35-206
Cow position: chr21:44732773-44732940 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 72

Conread position: 35-257
Cow position: chr21:25012346-25012135 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 10

Conread position: 35-280
Cow position: chr21:48334515-48334760 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 166
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 60

Conread position: 35-284
Cow position: chr21:20163978-20163734 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 27, 52

Conread position: 35-287
Cow position: chr21:36682605-36682348 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 73, 21

Conread position: 35-365
Cow position: chr21:18059690-18060016 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 30, 19

Conread position: 35-385
Cow position: chr21:47713737-47714086 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 241
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 27, 74

Conread position: 35-390
Cow position: chr21:10859080-10858732 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 233
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 31, 77

Conread position: 35-398
Cow position: chr21:47318-46945 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 245
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 117

Conread position: 35-399
Cow position: chr21:957939-957576 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 29, 71

Conread position: 35-399
Cow position: chr21:9477434-9477066 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 242
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 27, 73

Conread position: 35-405
Cow position: chr21:12461698-12462074 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 269
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 76

Conread position: 35-482
Cow position: chr21:13365635-13365151 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 206

Conread position: 35-493
Cow position: chr21:27521072-27521526 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 73

Conread position: 35-496
Cow position: chr21:6051775-6051302 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 75

Conread position: 35-689
Cow position: chr21:10070654-10071324 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 11

Conread position: 35-728
Cow position: chr21:643590-642912 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 31

Conread position: 35-728
Cow position: chr21:33982544-33983243 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 77

Conread position: 35-728
Cow position: chr21:37706142-37706848 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 74

Conread position: 35-728
Cow position: chr21:38918471-38917801 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 19

Conread position: 36-268
Cow position: chr21:13580683-13580455 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 150, 66

Conread position: 36-274
Cow position: chr21:39394018-39393784 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 80

Conread position: 36-397
Cow position: chr21:17559648-17560023 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 241
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 17

Conread position: 36-399
Cow position: chr21:11027090-11027450 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 251
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 26, 18

Conread position: 36-399
Cow position: chr21:23979910-23980278 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 239
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 86

Conread position: 36-496
Cow position: chr21:41621395-41620915 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 322
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 152, 14

Conread position: 37-397
Cow position: chr21:30222610-30222251 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 74

Conread position: 37-487
Cow position: chr21:13584784-13585253 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 212

Conread position: 37-657
Cow position: chr21:37480232-37479596 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 72

Conread position: 37-717
Cow position: chr21:15545095-15545785 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 66

Conread position: 38-258
Cow position: chr21:40820584-40820801 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 24, 84

Conread position: 38-403
Cow position: chr21:45906354-45906721 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 247
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 74

Conread position: 38-728
Cow position: chr21:21215890-21216575 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 39

Conread position: 39-481
Cow position: chr21:14452499-14452041 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 310
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 23, 37

Conread position: 40-204
Cow position: chr21:39845867-39845699 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 40-206
Cow position: chr21:32272194-32272024 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 14

Conread position: 40-398
Cow position: chr21:20260032-20260416 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 299

Conread position: 40-405
Cow position: chr21:30835631-30835264 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 251
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 22, 67

Conread position: 40-474
Cow position: chr21:13488820-13488337 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 308

Conread position: 40-485
Cow position: chr21:38449187-38449645 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 322
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 22, 69

Conread position: 40-576
Cow position: chr21:39888461-39889026 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 296

Conread position: 40-711
Cow position: chr21:5898144-5898827 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 68

Conread position: 40-711
Cow position: chr21:32297243-32297919 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 236

Conread position: 51-486
Cow position: chr21:22861246-22860808 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 60

Conread position: 58-323
Cow position: chr21:828964-829227 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 128, 50

Conread position: 58-621
Cow position: chr21:24858562-24857984 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 52

Conread position: 61-230
Cow position: chr21:27744272-27744105 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 125, 77

Conread position: 61-244
Cow position: chr21:8506304-8506480 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 126, 47

Conread position: 61-244
Cow position: chr21:8509192-8509368 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 126, 47

Conread position: 61-276
Cow position: chr21:6851408-6851206 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 127, 78

Conread position: 61-281
Cow position: chr21:19868719-19868925 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 127, 46

Conread position: 61-283
Cow position: chr21:22851158-22850949 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 125, 47

Conread position: 61-283
Cow position: chr21:41287553-41287765 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 125, 47

Conread position: 61-285
Cow position: chr21:17252734-17252953 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 125, 47

Conread position: 61-287
Cow position: chr21:19240635-19240851 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 125, 30

Conread position: 61-287
Cow position: chr21:24875595-24875376 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 125, 47

Conread position: 61-297
Cow position: chr21:17519271-17519036 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 85, 99

Conread position: 61-305
Cow position: chr21:46599601-46599359 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 127, 50

Conread position: 61-329
Cow position: chr21:71829-71563 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 125, 47

Conread position: 61-330
Cow position: chr21:28030522-28030264 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 128, 15

Conread position: 61-330
Cow position: chr21:38720492-38720228 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 180
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 199, 32

Conread position: 61-346
Cow position: chr21:10656858-10657142 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 197
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 124, 49

Conread position: 61-348
Cow position: chr21:45835147-45835444 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 197
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 78, 263

Conread position: 61-355
Cow position: chr21:19059848-19060136 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 85, 60

Conread position: 61-360
Cow position: chr21:17890546-17890249 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 200
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 125, 46

Conread position: 61-368
Cow position: chr21:8426686-8426379 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 17, 46

Conread position: 61-368
Cow position: chr21:10292737-10292428 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 205
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 125, 61

Conread position: 61-368
Cow position: chr21:11779295-11779592 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 202
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 295, 64

Conread position: 61-377
Cow position: chr21:1511529-1511220 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 213
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 201, 40

Conread position: 61-385
Cow position: chr21:28237456-28237793 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 222
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 141

Conread position: 61-388
Cow position: chr21:22210000-22210326 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 232
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 123, 58

Conread position: 61-392
Cow position: chr21:16152683-16152345 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 228
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 125, 47

Conread position: 61-396
Cow position: chr21:28919288-28919614 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 225
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 127, 42

Conread position: 61-399
Cow position: chr21:11739876-11740212 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 35

Conread position: 61-399
Cow position: chr21:16915024-16914679 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 239
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 73, 46

Conread position: 61-399
Cow position: chr21:17874947-17875288 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 240
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 97, 40

Conread position: 61-399
Cow position: chr21:19067776-19067436 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 219
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 125, 98

Conread position: 61-399
Cow position: chr21:20032589-20032932 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 218
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 107

Conread position: 61-405
Cow position: chr21:41590323-41590661 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 127, 50

Conread position: 61-419
Cow position: chr21:10561342-10561703 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 256
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 128, 65

Conread position: 61-442
Cow position: chr21:44658804-44658451 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 255
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 127, 41

Conread position: 61-456
Cow position: chr21:10114090-10114493 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 269
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 125, 52

Conread position: 61-458
Cow position: chr21:28244710-28244310 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 267
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 127, 55

Conread position: 61-483
Cow position: chr21:32559128-32559545 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 48

Conread position: 61-487
Cow position: chr21:14464829-14464382 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 304
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 85, 41

Conread position: 61-487
Cow position: chr21:29001903-29002357 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 109

Conread position: 61-487
Cow position: chr21:42135376-42135819 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 47

Conread position: 61-490
Cow position: chr21:3360773-3361212 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 306
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 126, 47

Conread position: 61-493
Cow position: chr21:9311298-9310842 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 310
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 90, 41

Conread position: 61-496
Cow position: chr21:27568916-27569362 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 153

Conread position: 61-523
Cow position: chr21:15444839-15445310 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 61

Conread position: 61-562
Cow position: chr21:44251598-44252095 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 11

Conread position: 61-608
Cow position: chr21:46264434-46263863 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 192

Conread position: 61-612
Cow position: chr21:34654313-34653768 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 52

Conread position: 61-618
Cow position: chr21:20160921-20160360 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 13

Conread position: 61-618
Cow position: chr21:41974124-41974701 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 152

Conread position: 61-619
Cow position: chr21:11644723-11645310 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 47

Conread position: 61-662
Cow position: chr21:23822395-23821803 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 49

Conread position: 61-678
Cow position: chr21:938264-937668 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 49

Conread position: 61-702
Cow position: chr21:44825632-44826273 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 37

Conread position: 61-728
Cow position: chr21:10264278-10263607 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 61

Conread position: 61-728
Cow position: chr21:18289920-18289230 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 122

Conread position: 61-728
Cow position: chr21:24296522-24297194 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 41

Conread position: 61-728
Cow position: chr21:25345107-25344442 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 61

Conread position: 61-728
Cow position: chr21:29069080-29069752 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 46

Conread position: 61-728
Cow position: chr21:30848705-30849371 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 47

Conread position: 61-728
Cow position: chr21:37299703-37299033 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 14

Conread position: 61-728
Cow position: chr21:48637512-48638177 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 61

Conread position: 61-729
Cow position: chr21:12154368-12153700 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 41

Conread position: 62-280
Cow position: chr21:16498757-16498550 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 122, 46

Conread position: 62-330
Cow position: chr21:14126514-14126264 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 124, 38

Conread position: 62-380
Cow position: chr21:47719062-47719373 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 217, 45

Conread position: 62-473
Cow position: chr21:802081-802475 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 50

Conread position: 62-498
Cow position: chr21:23535955-23535507 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 71

Conread position: 62-498
Cow position: chr21:30592072-30592504 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 318
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 126, 40

Conread position: 62-556
Cow position: chr21:3585122-3585618 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 54

Conread position: 62-666
Cow position: chr21:30231454-30232071 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 49

Conread position: 62-738
Cow position: chr21:7673355-7672678 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 46

Conread position: 63-281
Cow position: chr21:9417903-9418126 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 36, 153

Conread position: 63-399
Cow position: chr21:7824949-7825270 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 104, 62

Conread position: 63-405
Cow position: chr21:20153198-20152843 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 242
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 125, 53

Conread position: 64-631
Cow position: chr21:13047950-13048533 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 50

Conread position: 65-283
Cow position: chr21:24266322-24266539 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 148
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 122, 81

Conread position: 65-376
Cow position: chr21:24343026-24343335 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 204
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 123, 42

Conread position: 65-480
Cow position: chr21:47464880-47465309 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 43

Conread position: 65-567
Cow position: chr21:41156110-41155589 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 45

Conread position: 70-397
Cow position: chr21:27810626-27810314 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 70-710
Cow position: chr21:38692437-38691778 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 26

Conread position: 71-717
Cow position: chr21:29213922-29214579 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 71

Conread position: 73-449
Cow position: chr21:18800296-18800686 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 264
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 115, 229

Conread position: 77-356
Cow position: chr21:41522181-41522457 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 109, 132

Conread position: 77-367
Cow position: chr21:8349552-8349267 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 111, 31

Conread position: 77-728
Cow position: chr21:20262117-20262770 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 63

Conread position: 82-308
Cow position: chr21:7169909-7169683 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 106, 43

Conread position: 86-485
Cow position: chr21:21169275-21169692 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 284
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 100, 25

Conread position: 88-477
Cow position: chr21:9990727-9990329 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 14

Conread position: 88-487
Cow position: chr21:45329738-45330135 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 260
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 20

Conread position: 88-717
Cow position: chr21:34390736-34391389 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 23

Conread position: 95-556
Cow position: chr21:33350957-33350483 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 120

Conread position: 98-399
Cow position: chr21:11360238-11359945 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 204
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 183, 16

Conread position: 103-400
Cow position: chr21:35437281-35437562 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 207
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 67

Conread position: 104-387
Cow position: chr21:29978556-29978837 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 84, 21

Conread position: 104-711
Cow position: chr21:82272-81656 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 36

Conread position: 105-630
Cow position: chr21:5392329-5392874 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 219

Conread position: 108-295
Cow position: chr21:19359977-19360167 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 81, 14

Conread position: 108-487
Cow position: chr21:12801544-12801939 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 284
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 80, 217

Conread position: 108-496
Cow position: chr21:29485179-29484780 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 32

Conread position: 110-460
Cow position: chr21:10001274-10000912 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 254
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 78, 38

Conread position: 111-328
Cow position: chr21:11057683-11057897 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 77, 35

Conread position: 111-382
Cow position: chr21:36910129-36909858 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 185
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 47, 32

Conread position: 111-457
Cow position: chr21:27624895-27624547 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 12

Conread position: 111-683
Cow position: chr21:7581707-7582292 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 34

Conread position: 112-344
Cow position: chr21:43259414-43259185 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 77, 11

Conread position: 112-399
Cow position: chr21:30250005-30250286 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 19, 37

Conread position: 112-475
Cow position: chr21:37344903-37345285 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 261
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 13, 39

Conread position: 112-514
Cow position: chr21:48250853-48251252 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 285
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 76, 37

Conread position: 112-603
Cow position: chr21:42384708-42384199 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 32

Conread position: 112-667
Cow position: chr21:26245113-26244565 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 204

Conread position: 114-564
Cow position: chr21:36795800-36795330 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 209

Conread position: 114-717
Cow position: chr21:15584224-15584823 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 48

Conread position: 115-599
Cow position: chr21:32237474-32236994 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 33

Conread position: 116-381
Cow position: chr21:4280482-4280747 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 73, 24

Conread position: 116-399
Cow position: chr21:45920868-45921155 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 195
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 70, 6

Conread position: 116-494
Cow position: chr21:41598006-41597613 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 262
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 72, 155

Conread position: 117-395
Cow position: chr21:16570092-16569812 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 13, 22

Conread position: 118-495
Cow position: chr21:8206961-8206587 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 259
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 141, 14

Conread position: 118-717
Cow position: chr21:27341402-27342008 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 25

Conread position: 119-668
Cow position: chr21:15976822-15976267 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 39

Conread position: 120-678
Cow position: chr21:33264037-33263467 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 198

Conread position: 122-399
Cow position: chr21:36297681-36297394 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 66, 16

Conread position: 122-481
Cow position: chr21:47763931-47764301 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 253
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 67, 18

Conread position: 123-399
Cow position: chr21:22465376-22465101 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 65, 25

Conread position: 123-399
Cow position: chr21:48233979-48234255 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 198
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 60, 17

Conread position: 123-495
Cow position: chr21:24598843-24598456 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 271
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 64, 15

Conread position: 123-496
Cow position: chr21:1059262-1058873 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 266
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 66, 21

Conread position: 123-496
Cow position: chr21:40134343-40133951 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 265
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 67, 25

Conread position: 123-717
Cow position: chr21:31691670-31691073 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 86

Conread position: 123-728
Cow position: chr21:38900960-38900350 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 125-280
Cow position: chr21:46451770-46451922 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 13

Conread position: 126-483
Cow position: chr21:5427121-5426755 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 254
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 62, 12

Conread position: 126-555
Cow position: chr21:42348511-42348941 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 22

Conread position: 127-622
Cow position: chr21:396049-395550 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 19

Conread position: 127-688
Cow position: chr21:5153802-5153223 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 28

Conread position: 127-728
Cow position: chr21:33210372-33209767 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 135

Conread position: 128-516
Cow position: chr21:28626418-28626017 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 18

Conread position: 129-403
Cow position: chr21:45262628-45262910 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 59, 187

Conread position: 129-717
Cow position: chr21:25764815-25764212 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 17

Conread position: 129-725
Cow position: chr21:44671926-44671319 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 70

Conread position: 130-399
Cow position: chr21:12723332-12723064 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 58, 79

Conread position: 133-487
Cow position: chr21:45356011-45355641 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 248
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 55, 167

Conread position: 133-581
Cow position: chr21:43357080-43357548 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 322
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 57, 19

Conread position: 134-476
Cow position: chr21:28191209-28190844 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 257
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 54, 89

Conread position: 136-399
Cow position: chr21:35354708-35354441 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 49, 185

Conread position: 141-369
Cow position: chr21:297924-297689 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 48, 180

Conread position: 141-474
Cow position: chr21:15911570-15911218 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 245
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 47, 70

Conread position: 141-621
Cow position: chr21:38121271-38120776 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 70

Conread position: 144-711
Cow position: chr21:42540055-42540638 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 6

Conread position: 148-391
Cow position: chr21:44214289-44214039 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 40, 63

Conread position: 148-496
Cow position: chr21:47215032-47215385 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 242
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 241, 41

Conread position: 148-585
Cow position: chr21:2679711-2679268 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 7

Conread position: 148-656
Cow position: chr21:30990124-30990628 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 56

Conread position: 149-326
Cow position: chr21:20183233-20183049 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 149-717
Cow position: chr21:9940028-9940599 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 14

Conread position: 150-399
Cow position: chr21:20418521-20418781 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 172

Conread position: 160-637
Cow position: chr21:16187656-16188152 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 163-302
Cow position: chr21:12104514-12104367 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 164-481
Cow position: chr21:18828155-18828498 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 22, 159

Conread position: 165-470
Cow position: chr21:8235416-8235722 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 209
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 44

Conread position: 165-475
Cow position: chr21:18842091-18842421 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 21, 84

Conread position: 165-523
Cow position: chr21:41878615-41878245 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 258
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 109, 19

Conread position: 165-717
Cow position: chr21:23800982-23801534 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 155

Conread position: 165-728
Cow position: chr21:4998349-4998919 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 80

Conread position: 167-486
Cow position: chr21:1591698-1591357 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 238
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 20, 155

Conread position: 172-484
Cow position: chr21:35997310-35996980 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 227
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 78, 44

Conread position: 172-599
Cow position: chr21:23786170-23785723 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 301
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 78, 150

Conread position: 172-708
Cow position: chr21:24698619-24698063 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 183

Conread position: 172-716
Cow position: chr21:48290919-48291451 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 362
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 101, 29

Conread position: 174-502
Cow position: chr21:33727322-33727673 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 229
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 15, 152

Conread position: 178-460
Cow position: chr21:46859989-46860270 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 30

Conread position: 178-484
Cow position: chr21:10601242-10601560 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 235
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 12, 141

Conread position: 178-714
Cow position: chr21:724752-725308 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 36

Conread position: 178-717
Cow position: chr21:39401723-39401171 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 15

Conread position: 179-689
Cow position: chr21:2367463-2366946 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 138

Conread position: 179-714
Cow position: chr21:33997095-33997644 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 143

Conread position: 184-479
Cow position: chr21:18844886-18845202 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 222
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 90, 134

Conread position: 184-660
Cow position: chr21:19363333-19363816 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 136

Conread position: 185-399
Cow position: chr21:17856669-17856451 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 84, 135

Conread position: 185-697
Cow position: chr21:44515389-44514864 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 134

Conread position: 185-714
Cow position: chr21:15741960-15742523 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 140

Conread position: 185-728
Cow position: chr21:28442857-28442302 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 76

Conread position: 189-399
Cow position: chr21:20193015-20192806 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 85, 19

Conread position: 191-717
Cow position: chr21:24131188-24130663 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 72

Conread position: 197-552
Cow position: chr21:23149908-23150277 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 48

Conread position: 197-717
Cow position: chr21:23192396-23192942 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 127

Conread position: 209-494
Cow position: chr21:47066797-47067089 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 70, 30

Conread position: 212-719
Cow position: chr21:3813385-3813892 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 108

Conread position: 216-438
Cow position: chr21:18041753-18041989 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 63, 105

Conread position: 217-506
Cow position: chr21:35569288-35569598 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 15, 103

Conread position: 219-608
Cow position: chr21:47802168-47802575 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 87

Conread position: 223-672
Cow position: chr21:16612712-16612251 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 97

Conread position: 224-404
Cow position: chr21:14515927-14515752 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 32

Conread position: 231-487
Cow position: chr21:21077405-21077134 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 29, 65

Conread position: 231-594
Cow position: chr21:12960819-12961213 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 283
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 42, 76

Conread position: 232-717
Cow position: chr21:9862564-9863047 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 85

Conread position: 233-574
Cow position: chr21:36793972-36793602 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 256
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 28, 79

Conread position: 234-678
Cow position: chr21:35897563-35898005 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 50

Conread position: 257-555
Cow position: chr21:16166594-16166894 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 59

Conread position: 257-649
Cow position: chr21:5344710-5344313 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 11, 61

Conread position: 263-728
Cow position: chr21:3236565-3236095 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 52

Conread position: 267-728
Cow position: chr21:20925467-20925939 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 48

Conread position: 269-716
Cow position: chr21:48484410-48484862 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 46

Conread position: 270-717
Cow position: chr21:911931-912384 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 46

Conread position: 272-567
Cow position: chr21:25281762-25282060 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 104, 42

Conread position: 273-493
Cow position: chr21:25800429-25800213 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 42

Conread position: 274-711
Cow position: chr21:41957145-41957600 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 40

Conread position: 276-715
Cow position: chr21:26829229-26829658 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 38

Conread position: 277-653
Cow position: chr21:42190147-42190517 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 37

Conread position: 277-678
Cow position: chr21:18494997-18494596 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 37

Conread position: 279-682
Cow position: chr21:12617163-12616755 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 35

Conread position: 279-728
Cow position: chr21:29943029-29942562 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 37

Conread position: 288-490
Cow position: chr21:42053249-42053463 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 39, 26

Conread position: 293-714
Cow position: chr21:23683560-23683122 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 21

Conread position: 296-496
Cow position: chr21:46829261-46829472 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 91, 16

Conread position: 317-514
Cow position: chr21:24797676-24797473 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 66, 149

Conread position: 319-672
Cow position: chr21:31159250-31158876 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 234

Conread position: 339-475
Cow position: chr21:1511036-1510890 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 342-523
Cow position: chr21:28907683-28907883 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 95

Show alignments to all cow chromosomes.