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Cow genome map

           
Conread name:
           
Spl1-SPL01E050073
        

               
Conread position:
               
31-349
               

               
Cow position:
               
chr28:17071553-17071232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
34-717
               

               
Cow position:
               
chr28:14151438-14150758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 117
               

               
Conread position:
               
35-206
               

               
Cow position:
               
chr28:3759208-3759035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
35-243
               

               
Cow position:
               
chr28:9109422-9109224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
35-271
               

               
Cow position:
               
chr28:8396536-8396316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
151, 41
               

               
Conread position:
               
35-287
               

               
Cow position:
               
chr28:777887-777639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
35-291
               

               
Cow position:
               
chr28:5630316-5630058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
35-369
               

               
Cow position:
               
chr28:11079512-11079185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
35-399
               

               
Cow position:
               
chr28:4884044-4884417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
35-399
               

               
Cow position:
               
chr28:5436875-5437238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
35-399
               

               
Cow position:
               
chr28:11828750-11829092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
35-400
               

               
Cow position:
               
chr28:4159179-4158803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 285
               

               
Conread position:
               
35-405
               

               
Cow position:
               
chr28:5200037-5199666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 86
               

               
Conread position:
               
35-470
               

               
Cow position:
               
chr28:16204119-16204570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
35-487
               

               
Cow position:
               
chr28:31841138-31841590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
347, 16
               

               
Conread position:
               
35-495
               

               
Cow position:
               
chr28:5144303-5144785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
27, 114
               

               
Conread position:
               
35-497
               

               
Cow position:
               
chr28:1383061-1383517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
35-556
               

               
Cow position:
               
chr28:4307676-4308218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 101
               

               
Conread position:
               
35-592
               

               
Cow position:
               
chr28:9426141-9426698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
35-597
               

               
Cow position:
               
chr28:8347944-8347361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
35-660
               

               
Cow position:
               
chr28:11527048-11527685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
35-714
               

               
Cow position:
               
chr28:21845161-21844479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
35-715
               

               
Cow position:
               
chr28:8787750-8787082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 91
               

               
Conread position:
               
35-717
               

               
Cow position:
               
chr28:4071169-4070484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
35-718
               

               
Cow position:
               
chr28:20124996-20124305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
35-728
               

               
Cow position:
               
chr28:7697762-7698444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
36-614
               

               
Cow position:
               
chr28:12964794-12964199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 174
               

               
Conread position:
               
36-711
               

               
Cow position:
               
chr28:14657925-14657222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 93
               

               
Conread position:
               
36-728
               

               
Cow position:
               
chr28:23616614-23615916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
37-496
               

               
Cow position:
               
chr28:23460352-23459876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
92, 71
               

               
Conread position:
               
38-486
               

               
Cow position:
               
chr28:5236388-5236852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
40-270
               

               
Cow position:
               
chr28:17680831-17680603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
40-312
               

               
Cow position:
               
chr28:4013289-4013021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
40-326
               

               
Cow position:
               
chr28:20759487-20759782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 114
               

               
Conread position:
               
40-334
               

               
Cow position:
               
chr28:4182207-4181917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
40-399
               

               
Cow position:
               
chr28:4834636-4834996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
40-399
               

               
Cow position:
               
chr28:29416519-29416867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 77
               

               
Conread position:
               
40-453
               

               
Cow position:
               
chr28:5074315-5074724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
40-485
               

               
Cow position:
               
chr28:16369883-16370325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
40-598
               

               
Cow position:
               
chr28:16918968-16919523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
40-619
               

               
Cow position:
               
chr28:22332735-22332167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 32
               

               
Conread position:
               
50-385
               

               
Cow position:
               
chr28:3741064-3740747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
134, 51
               

               
Conread position:
               
52-711
               

               
Cow position:
               
chr28:16346344-16346990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 14
               

               
Conread position:
               
53-267
               

               
Cow position:
               
chr28:16879761-16879557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
12, 56
               

               
Conread position:
               
56-730
               

               
Cow position:
               
chr28:11585019-11585701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 61
               

               
Conread position:
               
58-399
               

               
Cow position:
               
chr28:13289970-13290286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
327, 49
               

               
Conread position:
               
58-710
               

               
Cow position:
               
chr28:16210914-16211566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 50
               

               
Conread position:
               
60-485
               

               
Cow position:
               
chr28:22346207-22345768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 12
               

               
Conread position:
               
61-220
               

               
Cow position:
               
chr28:4077153-4077315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
75, 104
               

               
Conread position:
               
61-248
               

               
Cow position:
               
chr28:19994762-19994943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
61-259
               

               
Cow position:
               
chr28:4364642-4364830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
127, 11
               

               
Conread position:
               
61-260
               

               
Cow position:
               
chr28:19038834-19039028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
125, 46
               

               
Conread position:
               
61-260
               

               
Cow position:
               
chr28:28501425-28501224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 155
               

               
Conread position:
               
61-268
               

               
Cow position:
               
chr28:17740009-17739808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
125, 54
               

               
Conread position:
               
61-283
               

               
Cow position:
               
chr28:5255055-5254843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
127, 59
               

               
Conread position:
               
61-301
               

               
Cow position:
               
chr28:7557546-7557777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
61-308
               

               
Cow position:
               
chr28:7131907-7132137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
125, 47
               

               
Conread position:
               
61-329
               

               
Cow position:
               
chr28:5138815-5139078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
127, 50
               

               
Conread position:
               
61-330
               

               
Cow position:
               
chr28:4046028-4045770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
125, 44
               

               
Conread position:
               
61-361
               

               
Cow position:
               
chr28:5577716-5577412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
129, 22
               

               
Conread position:
               
61-363
               

               
Cow position:
               
chr28:25129068-25128768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
128, 47
               

               
Conread position:
               
61-380
               

               
Cow position:
               
chr28:8140668-8140350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
127, 16
               

               
Conread position:
               
61-385
               

               
Cow position:
               
chr28:7008797-7009112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
61-385
               

               
Cow position:
               
chr28:19262400-19262726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
126, 60
               

               
Conread position:
               
61-388
               

               
Cow position:
               
chr28:751412-751088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
226, 41
               

               
Conread position:
               
61-399
               

               
Cow position:
               
chr28:4089875-4090199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 47
               

               
Conread position:
               
61-399
               

               
Cow position:
               
chr28:11866484-11866820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
127, 46
               

               
Conread position:
               
61-399
               

               
Cow position:
               
chr28:25973726-25973379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
61-399
               

               
Cow position:
               
chr28:29988925-29989267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 50
               

               
Conread position:
               
61-400
               

               
Cow position:
               
chr28:24082454-24082115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 47
               

               
Conread position:
               
61-404
               

               
Cow position:
               
chr28:657281-657608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
61-404
               

               
Cow position:
               
chr28:5224888-5224557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
61-405
               

               
Cow position:
               
chr28:26328143-26327797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
61-463
               

               
Cow position:
               
chr28:5273243-5273655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
61-464
               

               
Cow position:
               
chr28:12951600-12951202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
120, 50
               

               
Conread position:
               
61-473
               

               
Cow position:
               
chr28:9636273-9636696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
61-487
               

               
Cow position:
               
chr28:27218509-27218067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
92, 53
               

               
Conread position:
               
61-494
               

               
Cow position:
               
chr28:3492603-3493044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 46
               

               
Conread position:
               
61-496
               

               
Cow position:
               
chr28:20409575-20409141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
97, 50
               

               
Conread position:
               
61-516
               

               
Cow position:
               
chr28:26743815-26743340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 85
               

               
Conread position:
               
61-584
               

               
Cow position:
               
chr28:33884586-33884062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 39
               

               
Conread position:
               
61-612
               

               
Cow position:
               
chr28:10745399-10744829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 49
               

               
Conread position:
               
61-653
               

               
Cow position:
               
chr28:14998248-14997646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 40
               

               
Conread position:
               
61-656
               

               
Cow position:
               
chr28:12430791-12430186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 54
               

               
Conread position:
               
61-695
               

               
Cow position:
               
chr28:22308828-22308204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
61-695
               

               
Cow position:
               
chr28:25806781-25806138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 275
               

               
Conread position:
               
61-714
               

               
Cow position:
               
chr28:3746381-3745726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 38
               

               
Conread position:
               
61-714
               

               
Cow position:
               
chr28:9285193-9285842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 47
               

               
Conread position:
               
61-715
               

               
Cow position:
               
chr28:21868641-21867972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
61-716
               

               
Cow position:
               
chr28:24672452-24671791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
61-717
               

               
Cow position:
               
chr28:3023732-3024406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 48
               

               
Conread position:
               
61-717
               

               
Cow position:
               
chr28:3914889-3914229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 40
               

               
Conread position:
               
61-717
               

               
Cow position:
               
chr28:4282305-4282973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 47
               

               
Conread position:
               
61-717
               

               
Cow position:
               
chr28:5684884-5684217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 64
               

               
Conread position:
               
61-729
               

               
Cow position:
               
chr28:24966570-24965893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 47
               

               
Conread position:
               
61-731
               

               
Cow position:
               
chr28:13474483-13473818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
62-286
               

               
Cow position:
               
chr28:9705839-9705619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
22, 76
               

               
Conread position:
               
62-403
               

               
Cow position:
               
chr28:10845285-10844962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
184, 26
               

               
Conread position:
               
62-464
               

               
Cow position:
               
chr28:9100112-9099704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 53
               

               
Conread position:
               
62-486
               

               
Cow position:
               
chr28:1099494-1099894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
124, 46
               

               
Conread position:
               
62-496
               

               
Cow position:
               
chr28:26533728-26533280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
63-305
               

               
Cow position:
               
chr28:3445298-3445541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
123, 61
               

               
Conread position:
               
63-321
               

               
Cow position:
               
chr28:3410807-3411066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
125, 88
               

               
Conread position:
               
63-399
               

               
Cow position:
               
chr28:34430241-34430577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
123, 44
               

               
Conread position:
               
64-728
               

               
Cow position:
               
chr28:4138486-4139167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 68
               

               
Conread position:
               
65-374
               

               
Cow position:
               
chr28:12672281-12672587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
65-542
               

               
Cow position:
               
chr28:2801407-2800940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
86, 42
               

               
Conread position:
               
65-559
               

               
Cow position:
               
chr28:7512401-7512913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
71-405
               

               
Cow position:
               
chr28:4016700-4016376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 31
               

               
Conread position:
               
71-573
               

               
Cow position:
               
chr28:22371498-22372012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
72-309
               

               
Cow position:
               
chr28:26531105-26531344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
116, 44
               

               
Conread position:
               
72-399
               

               
Cow position:
               
chr28:4809948-4809643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
117, 30
               

               
Conread position:
               
72-399
               

               
Cow position:
               
chr28:30937505-30937817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
74-276
               

               
Cow position:
               
chr28:10775540-10775736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
158, 36
               

               
Conread position:
               
77-330
               

               
Cow position:
               
chr28:7350821-7350575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
111, 31
               

               
Conread position:
               
77-385
               

               
Cow position:
               
chr28:10863627-10863919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
77-477
               

               
Cow position:
               
chr28:11422647-11423047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 34
               

               
Conread position:
               
77-715
               

               
Cow position:
               
chr28:25057127-25056491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 31
               

               
Conread position:
               
78-659
               

               
Cow position:
               
chr28:11686851-11687457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 245
               

               
Conread position:
               
79-325
               

               
Cow position:
               
chr28:11348596-11348352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
86-490
               

               
Cow position:
               
chr28:23793152-23793557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
91-312
               

               
Cow position:
               
chr28:4823765-4823541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
97-405
               

               
Cow position:
               
chr28:25728342-25728043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
100-665
               

               
Cow position:
               
chr28:20313427-20312844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
104-326
               

               
Cow position:
               
chr28:7619006-7619231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
104-486
               

               
Cow position:
               
chr28:4938950-4938586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
283, 74
               

               
Conread position:
               
104-492
               

               
Cow position:
               
chr28:25596772-25596374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
106-576
               

               
Cow position:
               
chr28:5204337-5203865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
110-675
               

               
Cow position:
               
chr28:28164225-28163659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
111-484
               

               
Cow position:
               
chr28:22321557-22321172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
111-554
               

               
Cow position:
               
chr28:12619714-12619247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
112-399
               

               
Cow position:
               
chr28:2131786-2132073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
112-474
               

               
Cow position:
               
chr28:26220398-26220021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
112-484
               

               
Cow position:
               
chr28:10172280-10172664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 7
               

               
Conread position:
               
112-619
               

               
Cow position:
               
chr28:6971204-6971722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 214
               

               
Conread position:
               
115-329
               

               
Cow position:
               
chr28:12070368-12070154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
73, 116
               

               
Conread position:
               
116-467
               

               
Cow position:
               
chr28:11884387-11884756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
116-479
               

               
Cow position:
               
chr28:14649477-14649102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
116-490
               

               
Cow position:
               
chr28:23410189-23410580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
116-493
               

               
Cow position:
               
chr28:19025871-19026262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
116-717
               

               
Cow position:
               
chr28:8021968-8022591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
116-728
               

               
Cow position:
               
chr28:29199864-29199237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
117-399
               

               
Cow position:
               
chr28:33052169-33051874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
117-497
               

               
Cow position:
               
chr28:3408084-3408480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
227, 175
               

               
Conread position:
               
117-576
               

               
Cow position:
               
chr28:2960696-2961158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
117-666
               

               
Cow position:
               
chr28:5931484-5930922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
117-717
               

               
Cow position:
               
chr28:25763156-25762558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
117-728
               

               
Cow position:
               
chr28:11426410-11427027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
118-385
               

               
Cow position:
               
chr28:27161195-27161467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
143, 20
               

               
Conread position:
               
118-487
               

               
Cow position:
               
chr28:26719475-26719107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
118-523
               

               
Cow position:
               
chr28:23007597-23008017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
120-717
               

               
Cow position:
               
chr28:11752009-11752628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
122-714
               

               
Cow position:
               
chr28:662237-661634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
123-706
               

               
Cow position:
               
chr28:10588895-10589495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
125-486
               

               
Cow position:
               
chr28:3078555-3078930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
26, 31
               

               
Conread position:
               
126-607
               

               
Cow position:
               
chr28:33163339-33163828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
127-710
               

               
Cow position:
               
chr28:26922245-26922850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 14
               

               
Conread position:
               
128-405
               

               
Cow position:
               
chr28:18186678-18186397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
60, 23
               

               
Conread position:
               
129-449
               

               
Cow position:
               
chr28:24018107-24017788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
57, 127
               

               
Conread position:
               
132-498
               

               
Cow position:
               
chr28:5128608-5128991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
47, 191
               

               
Conread position:
               
132-661
               

               
Cow position:
               
chr28:12892317-12892828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 98
               

               
Conread position:
               
132-729
               

               
Cow position:
               
chr28:7865449-7864837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 192
               

               
Conread position:
               
132-729
               

               
Cow position:
               
chr28:21598130-21598744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 191
               

               
Conread position:
               
134-354
               

               
Cow position:
               
chr28:16245947-16246169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
141-528
               

               
Cow position:
               
chr28:15043751-15044150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 66
               

               
Conread position:
               
141-727
               

               
Cow position:
               
chr28:26614984-26614403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 121
               

               
Conread position:
               
143-385
               

               
Cow position:
               
chr28:2873027-2872780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
145-731
               

               
Cow position:
               
chr28:18591377-18590768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 64
               

               
Conread position:
               
146-396
               

               
Cow position:
               
chr28:22571562-22571813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
146-505
               

               
Cow position:
               
chr28:2862974-2862591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 155
               

               
Conread position:
               
146-728
               

               
Cow position:
               
chr28:30326985-30327573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 63
               

               
Conread position:
               
148-374
               

               
Cow position:
               
chr28:22813362-22813139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
148-385
               

               
Cow position:
               
chr28:32365948-32365709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 173
               

               
Conread position:
               
148-708
               

               
Cow position:
               
chr28:11786613-11787179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 135
               

               
Conread position:
               
149-572
               

               
Cow position:
               
chr28:23676241-23675812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 97
               

               
Conread position:
               
155-484
               

               
Cow position:
               
chr28:26103799-26103465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
158-492
               

               
Cow position:
               
chr28:8408828-8408477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
31, 156
               

               
Conread position:
               
166-401
               

               
Cow position:
               
chr28:30746644-30746883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
167-487
               

               
Cow position:
               
chr28:23621622-23621295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
113, 84
               

               
Conread position:
               
172-399
               

               
Cow position:
               
chr28:4763959-4763723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 151
               

               
Conread position:
               
172-534
               

               
Cow position:
               
chr28:10035466-10035115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
164, 12
               

               
Conread position:
               
172-579
               

               
Cow position:
               
chr28:16687106-16686691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
121, 93
               

               
Conread position:
               
172-696
               

               
Cow position:
               
chr28:16085405-16084867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 145
               

               
Conread position:
               
172-731
               

               
Cow position:
               
chr28:4536539-4535986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 124
               

               
Conread position:
               
178-605
               

               
Cow position:
               
chr28:5827024-5826579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 140
               

               
Conread position:
               
185-620
               

               
Cow position:
               
chr28:4588163-4587712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
187-574
               

               
Cow position:
               
chr28:7548994-7549400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 132
               

               
Conread position:
               
189-485
               

               
Cow position:
               
chr28:23776103-23775793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
189-728
               

               
Cow position:
               
chr28:7751239-7751780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
190-455
               

               
Cow position:
               
chr28:2737745-2738033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 128
               

               
Conread position:
               
191-717
               

               
Cow position:
               
chr28:3256858-3256322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 128
               

               
Conread position:
               
195-396
               

               
Cow position:
               
chr28:3000552-3000739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 78
               

               
Conread position:
               
203-624
               

               
Cow position:
               
chr28:5904780-5904347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
206-496
               

               
Cow position:
               
chr28:16243722-16244021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
151, 58
               

               
Conread position:
               
222-398
               

               
Cow position:
               
chr28:7607947-7608133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 100
               

               
Conread position:
               
232-710
               

               
Cow position:
               
chr28:10762680-10762211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
233-466
               

               
Cow position:
               
chr28:10212699-10212930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
233-498
               

               
Cow position:
               
chr28:29455642-29455921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
233-607
               

               
Cow position:
               
chr28:3751332-3750940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
235-483
               

               
Cow position:
               
chr28:32747936-32747690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
35, 80
               

               
Conread position:
               
240-516
               

               
Cow position:
               
chr28:26784452-26784750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
247-495
               

               
Cow position:
               
chr28:27428744-27428491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
248-484
               

               
Cow position:
               
chr28:2905578-2905330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 70
               

               
Conread position:
               
258-477
               

               
Cow position:
               
chr28:30961893-30961679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
259-695
               

               
Cow position:
               
chr28:31971765-31972214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 8
               

               
Conread position:
               
260-570
               

               
Cow position:
               
chr28:7590194-7590517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
97, 54
               

               
Conread position:
               
261-453
               

               
Cow position:
               
chr28:5188421-5188621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
263-717
               

               
Cow position:
               
chr28:5552958-5553390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
267-397
               

               
Cow position:
               
chr28:8935914-8935785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
268-621
               

               
Cow position:
               
chr28:19295379-19295748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
272-463
               

               
Cow position:
               
chr28:3077965-3077763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
272-463
               

               
Cow position:
               
chr28:8656765-8656965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
273-552
               

               
Cow position:
               
chr28:15008136-15007846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
273-678
               

               
Cow position:
               
chr28:10642042-10642464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
274-398
               

               
Cow position:
               
chr28:9108419-9108293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
114, 40
               

               
Conread position:
               
276-719
               

               
Cow position:
               
chr28:16214933-16215379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 38
               

               
Conread position:
               
277-464
               

               
Cow position:
               
chr28:19394586-19394400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
85, 37
               

               
Conread position:
               
279-713
               

               
Cow position:
               
chr28:17029752-17030169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
110, 22
               

               
Conread position:
               
280-496
               

               
Cow position:
               
chr28:16252892-16253117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
288-471
               

               
Cow position:
               
chr28:5658510-5658317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
99, 26
               

               
Conread position:
               
292-604
               

               
Cow position:
               
chr28:13371220-13371544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
312-728
               

               
Cow position:
               
chr28:16441319-16440908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 124
               

               
Conread position:
               
313-711
               

               
Cow position:
               
chr28:21129191-21129598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 228
               

               
Conread position:
               
318-712
               

               
Cow position:
               
chr28:11827423-11827016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 153
               

               
Conread position:
               
325-542
               

               
Cow position:
               
chr28:16879351-16879571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
327-524
               

               
Cow position:
               
chr28:16450782-16450981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 140
               

               
Conread position:
               
329-714
               

               
Cow position:
               
chr28:8372392-8372004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 5
               

               
Conread position:
               
338-604
               

               
Cow position:
               
chr28:3740755-3740484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
48, 199
               
Show alignments to all cow chromosomes.