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Cow genome map

           
Conread name:
           
Spl1-SPL01E050073
        

               
Conread position:
               
26-330
               

               
Cow position:
               
chr3:22668602-22668303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
118, 81
               

               
Conread position:
               
26-618
               

               
Cow position:
               
chr3:4461300-4461899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
29-542
               

               
Cow position:
               
chr3:59597362-59596870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 74
               

               
Conread position:
               
35-248
               

               
Cow position:
               
chr3:22924193-22924401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
35-259
               

               
Cow position:
               
chr3:17531556-17531776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
105, 10
               

               
Conread position:
               
35-302
               

               
Cow position:
               
chr3:64197007-64196739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
35-305
               

               
Cow position:
               
chr3:69785439-69785714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
35-305
               

               
Cow position:
               
chr3:71474226-71474496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 19
               

               
Conread position:
               
35-307
               

               
Cow position:
               
chr3:59299757-59299486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 64
               

               
Conread position:
               
35-335
               

               
Cow position:
               
chr3:58527558-58527281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
35-354
               

               
Cow position:
               
chr3:72342429-72342109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
35-359
               

               
Cow position:
               
chr3:18426518-18426840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
27, 91
               

               
Conread position:
               
35-373
               

               
Cow position:
               
chr3:29946568-29946240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
151, 19
               

               
Conread position:
               
35-381
               

               
Cow position:
               
chr3:27696783-27697141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
99, 291
               

               
Conread position:
               
35-390
               

               
Cow position:
               
chr3:48810457-48810808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
35-399
               

               
Cow position:
               
chr3:55318716-55319086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
35-404
               

               
Cow position:
               
chr3:75853154-75853515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
35-463
               

               
Cow position:
               
chr3:8061302-8060874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
35-467
               

               
Cow position:
               
chr3:75080938-75080504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
35-498
               

               
Cow position:
               
chr3:72474103-72473614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
35-550
               

               
Cow position:
               
chr3:83474940-83474406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 292
               

               
Conread position:
               
35-587
               

               
Cow position:
               
chr3:13353546-13352980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
35-605
               

               
Cow position:
               
chr3:68587196-68586643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 15
               

               
Conread position:
               
35-688
               

               
Cow position:
               
chr3:2675214-2674548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 81
               

               
Conread position:
               
35-711
               

               
Cow position:
               
chr3:9641736-9641044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 19
               

               
Conread position:
               
35-716
               

               
Cow position:
               
chr3:15051769-15052436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
35-717
               

               
Cow position:
               
chr3:53384097-53384793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
35-728
               

               
Cow position:
               
chr3:14553054-14552359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
35-731
               

               
Cow position:
               
chr3:1830393-1831096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 29
               

               
Conread position:
               
36-340
               

               
Cow position:
               
chr3:83787622-83787315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
151, 66
               

               
Conread position:
               
36-377
               

               
Cow position:
               
chr3:9662989-9663330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
150, 66
               

               
Conread position:
               
36-385
               

               
Cow position:
               
chr3:53318590-53318237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
36-455
               

               
Cow position:
               
chr3:81087456-81087860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
136, 87
               

               
Conread position:
               
36-485
               

               
Cow position:
               
chr3:57764395-57763943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
36-515
               

               
Cow position:
               
chr3:70676411-70675907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
98, 71
               

               
Conread position:
               
36-523
               

               
Cow position:
               
chr3:55970695-55970189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
36-585
               

               
Cow position:
               
chr3:7763838-7763291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
36-619
               

               
Cow position:
               
chr3:16752073-16752659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 102
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr3:19682887-19682605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
37-387
               

               
Cow position:
               
chr3:23920246-23920598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
37-472
               

               
Cow position:
               
chr3:83454972-83455419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
37-486
               

               
Cow position:
               
chr3:17456088-17456550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
37-716
               

               
Cow position:
               
chr3:36569859-36570549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
38-268
               

               
Cow position:
               
chr3:23131990-23132215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
148, 69
               

               
Conread position:
               
38-284
               

               
Cow position:
               
chr3:2638112-2637865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
38-452
               

               
Cow position:
               
chr3:53875583-53875997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
24, 77
               

               
Conread position:
               
38-571
               

               
Cow position:
               
chr3:55189572-55190109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 99
               

               
Conread position:
               
39-253
               

               
Cow position:
               
chr3:52845733-52845520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
39-399
               

               
Cow position:
               
chr3:63316305-63315952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
39-456
               

               
Cow position:
               
chr3:52651902-52652325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
39-485
               

               
Cow position:
               
chr3:38864296-38863833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 60
               

               
Conread position:
               
39-718
               

               
Cow position:
               
chr3:24351310-24350613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 120
               

               
Conread position:
               
39-728
               

               
Cow position:
               
chr3:50768857-50768154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
40-260
               

               
Cow position:
               
chr3:8813922-8814150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
12, 116
               

               
Conread position:
               
40-382
               

               
Cow position:
               
chr3:76713135-76713489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
40-461
               

               
Cow position:
               
chr3:18687078-18686660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
40-704
               

               
Cow position:
               
chr3:45882076-45881411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
40-728
               

               
Cow position:
               
chr3:2506299-2507000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 72
               

               
Conread position:
               
41-305
               

               
Cow position:
               
chr3:31349928-31350193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
41-325
               

               
Cow position:
               
chr3:1037205-1036919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
14, 106
               

               
Conread position:
               
41-358
               

               
Cow position:
               
chr3:17235028-17235348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
21, 135
               

               
Conread position:
               
41-402
               

               
Cow position:
               
chr3:19586040-19585681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 68
               

               
Conread position:
               
41-592
               

               
Cow position:
               
chr3:11987503-11986946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 70
               

               
Conread position:
               
42-717
               

               
Cow position:
               
chr3:74234360-74233701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 63
               

               
Conread position:
               
51-253
               

               
Cow position:
               
chr3:73421328-73421524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
135, 26
               

               
Conread position:
               
53-461
               

               
Cow position:
               
chr3:2680700-2680255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 274
               

               
Conread position:
               
54-339
               

               
Cow position:
               
chr3:17058384-17058661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
8, 58
               

               
Conread position:
               
55-483
               

               
Cow position:
               
chr3:68627526-68627953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 48
               

               
Conread position:
               
55-489
               

               
Cow position:
               
chr3:52608341-52607894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 10
               

               
Conread position:
               
57-696
               

               
Cow position:
               
chr3:49328109-49327458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 20
               

               
Conread position:
               
58-300
               

               
Cow position:
               
chr3:10668721-10668962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
58-395
               

               
Cow position:
               
chr3:60264563-60264893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
130, 48
               

               
Conread position:
               
58-454
               

               
Cow position:
               
chr3:44932670-44932259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 50
               

               
Conread position:
               
58-574
               

               
Cow position:
               
chr3:60597695-60597187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 50
               

               
Conread position:
               
61-206
               

               
Cow position:
               
chr3:3262668-3262818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
61-248
               

               
Cow position:
               
chr3:67407212-67407392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 45
               

               
Conread position:
               
61-253
               

               
Cow position:
               
chr3:35239166-35238982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 44
               

               
Conread position:
               
61-268
               

               
Cow position:
               
chr3:26603391-26603601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
61-284
               

               
Cow position:
               
chr3:59933535-59933308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 103
               

               
Conread position:
               
61-302
               

               
Cow position:
               
chr3:53083828-53084069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 50
               

               
Conread position:
               
61-312
               

               
Cow position:
               
chr3:49363262-49363020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
127, 42
               

               
Conread position:
               
61-318
               

               
Cow position:
               
chr3:47753392-47753122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr3:22165260-22165523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
61-325
               

               
Cow position:
               
chr3:9117189-9116921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 69
               

               
Conread position:
               
61-326
               

               
Cow position:
               
chr3:34871723-34871455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
125, 45
               

               
Conread position:
               
61-338
               

               
Cow position:
               
chr3:15950762-15951031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
61-344
               

               
Cow position:
               
chr3:35055821-35056104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 41
               

               
Conread position:
               
61-350
               

               
Cow position:
               
chr3:15443571-15443861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
125, 60
               

               
Conread position:
               
61-359
               

               
Cow position:
               
chr3:78093238-78093524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 16
               

               
Conread position:
               
61-360
               

               
Cow position:
               
chr3:76156141-76155846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
126, 45
               

               
Conread position:
               
61-362
               

               
Cow position:
               
chr3:1785068-1785385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
50, 268
               

               
Conread position:
               
61-365
               

               
Cow position:
               
chr3:3883665-3883965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
124, 64
               

               
Conread position:
               
61-368
               

               
Cow position:
               
chr3:79196918-79196610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
127, 55
               

               
Conread position:
               
61-369
               

               
Cow position:
               
chr3:18059859-18059550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
61-371
               

               
Cow position:
               
chr3:55177596-55177905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
127, 41
               

               
Conread position:
               
61-371
               

               
Cow position:
               
chr3:70333814-70334117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
127, 41
               

               
Conread position:
               
61-377
               

               
Cow position:
               
chr3:59035198-59034875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
130, 50
               

               
Conread position:
               
61-378
               

               
Cow position:
               
chr3:15153843-15153533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
126, 47
               

               
Conread position:
               
61-378
               

               
Cow position:
               
chr3:19793435-19793752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
201, 41
               

               
Conread position:
               
61-382
               

               
Cow position:
               
chr3:6182077-6182363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
128, 39
               

               
Conread position:
               
61-382
               

               
Cow position:
               
chr3:12978460-12978780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
61-385
               

               
Cow position:
               
chr3:68616180-68616491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
61-385
               

               
Cow position:
               
chr3:70761968-70762289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 42
               

               
Conread position:
               
61-385
               

               
Cow position:
               
chr3:79092229-79092561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 101
               

               
Conread position:
               
61-393
               

               
Cow position:
               
chr3:36418332-36418643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
125, 47
               

               
Conread position:
               
61-394
               

               
Cow position:
               
chr3:62046826-62046484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
70, 81
               

               
Conread position:
               
61-397
               

               
Cow position:
               
chr3:55819904-55819568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
204, 46
               

               
Conread position:
               
61-399
               

               
Cow position:
               
chr3:12705392-12705729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 46
               

               
Conread position:
               
61-399
               

               
Cow position:
               
chr3:54373702-54374044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
125, 47
               

               
Conread position:
               
61-399
               

               
Cow position:
               
chr3:70609780-70609443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
61-399
               

               
Cow position:
               
chr3:74079483-74079822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
61-399
               

               
Cow position:
               
chr3:83699713-83700053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
61-399
               

               
Cow position:
               
chr3:83797668-83798019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
76, 104
               

               
Conread position:
               
61-404
               

               
Cow position:
               
chr3:7662012-7661667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
125, 72
               

               
Conread position:
               
61-417
               

               
Cow position:
               
chr3:68156882-68156539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 16
               

               
Conread position:
               
61-430
               

               
Cow position:
               
chr3:24468229-24468590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
127, 15
               

               
Conread position:
               
61-453
               

               
Cow position:
               
chr3:43233658-43233255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
125, 50
               

               
Conread position:
               
61-457
               

               
Cow position:
               
chr3:25755190-25754784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
55, 131
               

               
Conread position:
               
61-463
               

               
Cow position:
               
chr3:71238305-71237899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
61-464
               

               
Cow position:
               
chr3:16333959-16333547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
79, 60
               

               
Conread position:
               
61-464
               

               
Cow position:
               
chr3:82019687-82020103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
122, 55
               

               
Conread position:
               
61-466
               

               
Cow position:
               
chr3:39661299-39661709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 53
               

               
Conread position:
               
61-470
               

               
Cow position:
               
chr3:73395270-73394851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
61-473
               

               
Cow position:
               
chr3:69416623-69417056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
61-483
               

               
Cow position:
               
chr3:32585308-32584880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 53
               

               
Conread position:
               
61-485
               

               
Cow position:
               
chr3:26066142-26065721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
61-485
               

               
Cow position:
               
chr3:49482559-49482984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
61-485
               

               
Cow position:
               
chr3:53046503-53046937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 84
               

               
Conread position:
               
61-487
               

               
Cow position:
               
chr3:54049874-54050301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
127, 61
               

               
Conread position:
               
61-489
               

               
Cow position:
               
chr3:70334537-70334987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
126, 61
               

               
Conread position:
               
61-495
               

               
Cow position:
               
chr3:68707867-68708291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 68
               

               
Conread position:
               
61-498
               

               
Cow position:
               
chr3:27274682-27274247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 41
               

               
Conread position:
               
61-498
               

               
Cow position:
               
chr3:30463021-30463459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
127, 24
               

               
Conread position:
               
61-513
               

               
Cow position:
               
chr3:59610564-59611024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
61-523
               

               
Cow position:
               
chr3:57754320-57754798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
61-524
               

               
Cow position:
               
chr3:2396640-2397102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 49
               

               
Conread position:
               
61-544
               

               
Cow position:
               
chr3:78077345-78076855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
61-548
               

               
Cow position:
               
chr3:48851812-48852302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
88, 50
               

               
Conread position:
               
61-549
               

               
Cow position:
               
chr3:2392814-2393314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
127, 56
               

               
Conread position:
               
61-555
               

               
Cow position:
               
chr3:77582261-77581773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
123, 42
               

               
Conread position:
               
61-559
               

               
Cow position:
               
chr3:17221978-17222502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 81
               

               
Conread position:
               
61-559
               

               
Cow position:
               
chr3:83441738-83442231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
325, 39
               

               
Conread position:
               
61-563
               

               
Cow position:
               
chr3:53150488-53149970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 53
               

               
Conread position:
               
61-571
               

               
Cow position:
               
chr3:22675952-22676443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 50
               

               
Conread position:
               
61-572
               

               
Cow position:
               
chr3:53428763-53429253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 45
               

               
Conread position:
               
61-584
               

               
Cow position:
               
chr3:59604997-59604495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 40
               

               
Conread position:
               
61-589
               

               
Cow position:
               
chr3:53222167-53221646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 50
               

               
Conread position:
               
61-618
               

               
Cow position:
               
chr3:29891251-29891821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 40
               

               
Conread position:
               
61-645
               

               
Cow position:
               
chr3:74088022-74088599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 42
               

               
Conread position:
               
61-692
               

               
Cow position:
               
chr3:65969329-65968670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 263
               

               
Conread position:
               
61-694
               

               
Cow position:
               
chr3:8591213-8591827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 50
               

               
Conread position:
               
61-703
               

               
Cow position:
               
chr3:16656330-16656963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 61
               

               
Conread position:
               
61-717
               

               
Cow position:
               
chr3:48363224-48362578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
61-717
               

               
Cow position:
               
chr3:68303473-68302800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 60
               

               
Conread position:
               
61-717
               

               
Cow position:
               
chr3:75480153-75479510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 50
               

               
Conread position:
               
61-721
               

               
Cow position:
               
chr3:58540362-58541054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 76
               

               
Conread position:
               
61-728
               

               
Cow position:
               
chr3:18393247-18393909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 71
               

               
Conread position:
               
61-728
               

               
Cow position:
               
chr3:31419850-31419174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
61-728
               

               
Cow position:
               
chr3:39969708-39970420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
61-728
               

               
Cow position:
               
chr3:65237178-65236496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 47
               

               
Conread position:
               
61-729
               

               
Cow position:
               
chr3:17936692-17937371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 61
               

               
Conread position:
               
61-729
               

               
Cow position:
               
chr3:21302288-21302952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 62
               

               
Conread position:
               
61-729
               

               
Cow position:
               
chr3:49118875-49119555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 41
               

               
Conread position:
               
61-731
               

               
Cow position:
               
chr3:60933573-60932908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
62-225
               

               
Cow position:
               
chr3:78258596-78258758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
62-276
               

               
Cow position:
               
chr3:9120996-9120791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
62-298
               

               
Cow position:
               
chr3:76270042-76269816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
62-384
               

               
Cow position:
               
chr3:75107926-75107629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 46
               

               
Conread position:
               
62-398
               

               
Cow position:
               
chr3:54100559-54100902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
59, 213
               

               
Conread position:
               
62-399
               

               
Cow position:
               
chr3:80072297-80071943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
62-417
               

               
Cow position:
               
chr3:54506860-54506508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
62-487
               

               
Cow position:
               
chr3:78945668-78946121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 186
               

               
Conread position:
               
62-491
               

               
Cow position:
               
chr3:23408210-23408630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 15
               

               
Conread position:
               
62-496
               

               
Cow position:
               
chr3:66900572-66901033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
115, 254
               

               
Conread position:
               
62-588
               

               
Cow position:
               
chr3:54781839-54782392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
62-594
               

               
Cow position:
               
chr3:56583002-56582460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
124, 48
               

               
Conread position:
               
62-728
               

               
Cow position:
               
chr3:77188594-77187929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
63-325
               

               
Cow position:
               
chr3:31361576-31361312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
123, 45
               

               
Conread position:
               
63-385
               

               
Cow position:
               
chr3:4319872-4319548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
28, 83
               

               
Conread position:
               
63-399
               

               
Cow position:
               
chr3:23105212-23105549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 48
               

               
Conread position:
               
63-399
               

               
Cow position:
               
chr3:78092358-78092689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 42
               

               
Conread position:
               
63-496
               

               
Cow position:
               
chr3:68880978-68881400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 51
               

               
Conread position:
               
63-566
               

               
Cow position:
               
chr3:210475-209964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 60
               

               
Conread position:
               
63-567
               

               
Cow position:
               
chr3:68648330-68647800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
63-717
               

               
Cow position:
               
chr3:61224596-61225250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 53
               

               
Conread position:
               
64-399
               

               
Cow position:
               
chr3:38035436-38035775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 36
               

               
Conread position:
               
65-403
               

               
Cow position:
               
chr3:60265098-60265425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
123, 75
               

               
Conread position:
               
65-461
               

               
Cow position:
               
chr3:13890631-13890221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
86, 46
               

               
Conread position:
               
65-716
               

               
Cow position:
               
chr3:72391238-72390574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 5
               

               
Conread position:
               
65-728
               

               
Cow position:
               
chr3:15953931-15954597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 57
               

               
Conread position:
               
66-460
               

               
Cow position:
               
chr3:26970963-26970570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
122, 20
               

               
Conread position:
               
68-281
               

               
Cow position:
               
chr3:49344843-49344634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
118, 40
               

               
Conread position:
               
68-399
               

               
Cow position:
               
chr3:74134855-74134522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
120, 29
               

               
Conread position:
               
70-243
               

               
Cow position:
               
chr3:19788685-19788851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
116, 53
               

               
Conread position:
               
70-398
               

               
Cow position:
               
chr3:3556694-3556367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
116, 57
               

               
Conread position:
               
70-484
               

               
Cow position:
               
chr3:44102113-44101702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
70-487
               

               
Cow position:
               
chr3:15159180-15158759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
70-723
               

               
Cow position:
               
chr3:65413128-65413808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 41
               

               
Conread position:
               
71-282
               

               
Cow position:
               
chr3:68004559-68004763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
71-327
               

               
Cow position:
               
chr3:3656663-3656405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
71-360
               

               
Cow position:
               
chr3:73820217-73820511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
85, 40
               

               
Conread position:
               
71-384
               

               
Cow position:
               
chr3:48072738-48073039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
117, 40
               

               
Conread position:
               
71-400
               

               
Cow position:
               
chr3:30940955-30940636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
117, 58
               

               
Conread position:
               
71-485
               

               
Cow position:
               
chr3:75158503-75158085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 36
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chr3:53910254-53909811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 36
               

               
Conread position:
               
71-737
               

               
Cow position:
               
chr3:23168920-23169600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 35
               

               
Conread position:
               
72-717
               

               
Cow position:
               
chr3:37041565-37040930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 49
               

               
Conread position:
               
77-268
               

               
Cow position:
               
chr3:5305947-5305752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 183
               

               
Conread position:
               
77-480
               

               
Cow position:
               
chr3:7330994-7331394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 30
               

               
Conread position:
               
77-487
               

               
Cow position:
               
chr3:26681675-26682075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
77-711
               

               
Cow position:
               
chr3:2630902-2630297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 30
               

               
Conread position:
               
77-724
               

               
Cow position:
               
chr3:10958102-10958726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 33
               

               
Conread position:
               
79-335
               

               
Cow position:
               
chr3:58317806-58318070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
107, 32
               

               
Conread position:
               
79-399
               

               
Cow position:
               
chr3:11063504-11063199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
109, 42
               

               
Conread position:
               
79-407
               

               
Cow position:
               
chr3:26982195-26981876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
79-485
               

               
Cow position:
               
chr3:55124144-55124558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
108, 43
               

               
Conread position:
               
79-496
               

               
Cow position:
               
chr3:14601566-14602004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
79-523
               

               
Cow position:
               
chr3:61323471-61323036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
105, 44
               

               
Conread position:
               
80-287
               

               
Cow position:
               
chr3:32409356-32409147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
62, 86
               

               
Conread position:
               
80-711
               

               
Cow position:
               
chr3:80565100-80564453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
81-626
               

               
Cow position:
               
chr3:7337649-7338194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 17
               

               
Conread position:
               
81-711
               

               
Cow position:
               
chr3:70565599-70566242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
82-406
               

               
Cow position:
               
chr3:81039612-81039933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
83-321
               

               
Cow position:
               
chr3:19626374-19626612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
105, 25
               

               
Conread position:
               
88-728
               

               
Cow position:
               
chr3:73709175-73708534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 34
               

               
Conread position:
               
95-637
               

               
Cow position:
               
chr3:83491213-83490654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
166, 211
               

               
Conread position:
               
100-399
               

               
Cow position:
               
chr3:74878465-74878773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
69, 54
               

               
Conread position:
               
103-668
               

               
Cow position:
               
chr3:81371768-81371195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
106-467
               

               
Cow position:
               
chr3:73461079-73460717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
174, 16
               

               
Conread position:
               
107-304
               

               
Cow position:
               
chr3:15173199-15172991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
107-479
               

               
Cow position:
               
chr3:54946247-54945851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 215
               

               
Conread position:
               
107-678
               

               
Cow position:
               
chr3:50069879-50069317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 132
               

               
Conread position:
               
108-398
               

               
Cow position:
               
chr3:49790699-49790990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
108-435
               

               
Cow position:
               
chr3:67930072-67930407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
153, 100
               

               
Conread position:
               
108-487
               

               
Cow position:
               
chr3:3738594-3738209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
109-522
               

               
Cow position:
               
chr3:53113287-53112851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
111-490
               

               
Cow position:
               
chr3:73442986-73443372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 29
               

               
Conread position:
               
112-277
               

               
Cow position:
               
chr3:82629426-82629261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
112-350
               

               
Cow position:
               
chr3:84175715-84175957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
112-380
               

               
Cow position:
               
chr3:53508720-53508460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
76, 26
               

               
Conread position:
               
112-399
               

               
Cow position:
               
chr3:13507579-13507285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
76, 211
               

               
Conread position:
               
112-399
               

               
Cow position:
               
chr3:20677733-20678018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
112-440
               

               
Cow position:
               
chr3:17447506-17447843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
112-453
               

               
Cow position:
               
chr3:15752525-15752876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 87
               

               
Conread position:
               
112-475
               

               
Cow position:
               
chr3:70899999-70899630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
112-487
               

               
Cow position:
               
chr3:52863072-52863465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
112-496
               

               
Cow position:
               
chr3:3985432-3985039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 26
               

               
Conread position:
               
112-585
               

               
Cow position:
               
chr3:18067243-18066756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 54
               

               
Conread position:
               
112-593
               

               
Cow position:
               
chr3:12711806-12712312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 34
               

               
Conread position:
               
112-711
               

               
Cow position:
               
chr3:48296807-48296199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 34
               

               
Conread position:
               
112-728
               

               
Cow position:
               
chr3:59691997-59691391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 36
               

               
Conread position:
               
114-399
               

               
Cow position:
               
chr3:15506560-15506268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
114-728
               

               
Cow position:
               
chr3:61279015-61278394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 31
               

               
Conread position:
               
115-495
               

               
Cow position:
               
chr3:29813338-29812954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
115-523
               

               
Cow position:
               
chr3:67704652-67704218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
116-370
               

               
Cow position:
               
chr3:62789068-62789331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
72, 209
               

               
Conread position:
               
116-372
               

               
Cow position:
               
chr3:46541721-46541981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
6, 184
               

               
Conread position:
               
116-496
               

               
Cow position:
               
chr3:56059918-56059516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 207
               

               
Conread position:
               
116-572
               

               
Cow position:
               
chr3:5100667-5101125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
117-337
               

               
Cow position:
               
chr3:63177586-63177360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
117-451
               

               
Cow position:
               
chr3:55835716-55836075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
117-518
               

               
Cow position:
               
chr3:53790430-53790857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 98
               

               
Conread position:
               
117-644
               

               
Cow position:
               
chr3:59000654-59001177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
117-681
               

               
Cow position:
               
chr3:80581759-80581205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
117-716
               

               
Cow position:
               
chr3:48241719-48241103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
117-728
               

               
Cow position:
               
chr3:80053440-80054059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
120-487
               

               
Cow position:
               
chr3:17895950-17895572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
68, 18
               

               
Conread position:
               
121-522
               

               
Cow position:
               
chr3:74601216-74600803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 197
               

               
Conread position:
               
121-652
               

               
Cow position:
               
chr3:79292929-79292385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 23
               

               
Conread position:
               
122-444
               

               
Cow position:
               
chr3:22232558-22232882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
66, 16
               

               
Conread position:
               
122-618
               

               
Cow position:
               
chr3:116289-115810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
123-321
               

               
Cow position:
               
chr3:44960907-44961092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
123-384
               

               
Cow position:
               
chr3:76922565-76922828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
123-389
               

               
Cow position:
               
chr3:24935468-24935201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 169
               

               
Conread position:
               
123-462
               

               
Cow position:
               
chr3:56476780-56476425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
123-498
               

               
Cow position:
               
chr3:72529-72122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
123-717
               

               
Cow position:
               
chr3:55271947-55272542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
123-726
               

               
Cow position:
               
chr3:58767361-58766778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 23
               

               
Conread position:
               
125-493
               

               
Cow position:
               
chr3:59208890-59208525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
125-493
               

               
Cow position:
               
chr3:73764101-73764481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
126-496
               

               
Cow position:
               
chr3:19006754-19006376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 83
               

               
Conread position:
               
128-383
               

               
Cow position:
               
chr3:26218960-26219214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
128-496
               

               
Cow position:
               
chr3:8394036-8393648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
128-728
               

               
Cow position:
               
chr3:49650481-49649861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
129-485
               

               
Cow position:
               
chr3:67744534-67744908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 189
               

               
Conread position:
               
130-496
               

               
Cow position:
               
chr3:15228732-15229110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
58, 16
               

               
Conread position:
               
132-564
               

               
Cow position:
               
chr3:83815697-83816158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 188
               

               
Conread position:
               
132-607
               

               
Cow position:
               
chr3:24352951-24352486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
57, 79
               

               
Conread position:
               
133-490
               

               
Cow position:
               
chr3:45648220-45647852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
55, 76
               

               
Conread position:
               
133-655
               

               
Cow position:
               
chr3:37186916-37186388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 47
               

               
Conread position:
               
134-731
               

               
Cow position:
               
chr3:62826530-62827133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 64
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr3:66292088-66292459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
52, 165
               

               
Conread position:
               
135-576
               

               
Cow position:
               
chr3:10347443-10346978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
135-719
               

               
Cow position:
               
chr3:28908115-28908734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
141-377
               

               
Cow position:
               
chr3:79093961-79094206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
141-385
               

               
Cow position:
               
chr3:73915726-73915970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
141-487
               

               
Cow position:
               
chr3:45647762-45647395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
49, 179
               

               
Conread position:
               
141-493
               

               
Cow position:
               
chr3:74533431-74533060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 179
               

               
Conread position:
               
141-717
               

               
Cow position:
               
chr3:29887338-29887928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 175
               

               
Conread position:
               
144-394
               

               
Cow position:
               
chr3:10896901-10896657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
42, 102
               

               
Conread position:
               
146-618
               

               
Cow position:
               
chr3:72676168-72675677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 172
               

               
Conread position:
               
148-359
               

               
Cow position:
               
chr3:74584282-74584077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
148-390
               

               
Cow position:
               
chr3:55109538-55109786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 165
               

               
Conread position:
               
148-399
               

               
Cow position:
               
chr3:74502250-74502505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
148-478
               

               
Cow position:
               
chr3:525421-525081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 166
               

               
Conread position:
               
148-483
               

               
Cow position:
               
chr3:5374403-5374057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
40, 55
               

               
Conread position:
               
148-487
               

               
Cow position:
               
chr3:5097282-5096921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
40, 172
               

               
Conread position:
               
148-490
               

               
Cow position:
               
chr3:4032038-4031683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
78, 41
               

               
Conread position:
               
148-496
               

               
Cow position:
               
chr3:45534221-45534590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
148-571
               

               
Cow position:
               
chr3:58968828-58969252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 149
               

               
Conread position:
               
148-572
               

               
Cow position:
               
chr3:59101902-59101475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
149-385
               

               
Cow position:
               
chr3:7940483-7940722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
149-487
               

               
Cow position:
               
chr3:53739111-53739473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
39, 171
               

               
Conread position:
               
150-668
               

               
Cow position:
               
chr3:75711379-75710852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 118
               

               
Conread position:
               
151-555
               

               
Cow position:
               
chr3:70896120-70895699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 99
               

               
Conread position:
               
152-410
               

               
Cow position:
               
chr3:11712036-11711766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 170
               

               
Conread position:
               
152-451
               

               
Cow position:
               
chr3:23444817-23445136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 169
               

               
Conread position:
               
153-717
               

               
Cow position:
               
chr3:69750641-69751211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 42
               

               
Conread position:
               
155-714
               

               
Cow position:
               
chr3:59799316-59798753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 164
               

               
Conread position:
               
160-487
               

               
Cow position:
               
chr3:56314-56651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
28, 70
               

               
Conread position:
               
163-360
               

               
Cow position:
               
chr3:73237256-73237053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
25, 158
               

               
Conread position:
               
163-728
               

               
Cow position:
               
chr3:34556180-34556742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 158
               

               
Conread position:
               
165-714
               

               
Cow position:
               
chr3:14626092-14626662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 161
               

               
Conread position:
               
167-405
               

               
Cow position:
               
chr3:78896703-78896458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 145
               

               
Conread position:
               
172-391
               

               
Cow position:
               
chr3:34294217-34294457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 164
               

               
Conread position:
               
172-728
               

               
Cow position:
               
chr3:66609793-66610361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
176-405
               

               
Cow position:
               
chr3:2198930-2198691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
11, 101
               

               
Conread position:
               
178-496
               

               
Cow position:
               
chr3:73759472-73759810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
184-575
               

               
Cow position:
               
chr3:58285869-58286265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
105, 32
               

               
Conread position:
               
184-717
               

               
Cow position:
               
chr3:15057582-15058113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
184-728
               

               
Cow position:
               
chr3:39171448-39172032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 84
               

               
Conread position:
               
185-462
               

               
Cow position:
               
chr3:22820608-22820312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
185-644
               

               
Cow position:
               
chr3:31046915-31047377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
186-393
               

               
Cow position:
               
chr3:15992755-15992542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 138
               

               
Conread position:
               
197-485
               

               
Cow position:
               
chr3:75057109-75057394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
197-486
               

               
Cow position:
               
chr3:81277673-81277985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
64, 122
               

               
Conread position:
               
199-629
               

               
Cow position:
               
chr3:5850906-5851349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 121
               

               
Conread position:
               
206-714
               

               
Cow position:
               
chr3:69961698-69962223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 92
               

               
Conread position:
               
209-728
               

               
Cow position:
               
chr3:49218301-49218829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 109
               

               
Conread position:
               
210-464
               

               
Cow position:
               
chr3:14625378-14625647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 95
               

               
Conread position:
               
212-514
               

               
Cow position:
               
chr3:65800602-65800286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
50, 86
               

               
Conread position:
               
213-528
               

               
Cow position:
               
chr3:83921199-83920878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
219-711
               

               
Cow position:
               
chr3:54960192-54959695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
232-689
               

               
Cow position:
               
chr3:13329783-13330283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 244
               

               
Conread position:
               
240-399
               

               
Cow position:
               
chr3:27212346-27212179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 82
               

               
Conread position:
               
243-588
               

               
Cow position:
               
chr3:35283110-35283466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
30, 243
               

               
Conread position:
               
247-481
               

               
Cow position:
               
chr3:5899793-5899550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
247-715
               

               
Cow position:
               
chr3:61190956-61191424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 8
               

               
Conread position:
               
250-714
               

               
Cow position:
               
chr3:68342288-68342761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 8
               

               
Conread position:
               
256-717
               

               
Cow position:
               
chr3:80081860-80082327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
259-479
               

               
Cow position:
               
chr3:35702841-35702612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
77, 30
               

               
Conread position:
               
259-725
               

               
Cow position:
               
chr3:33327668-33327167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
5, 59
               

               
Conread position:
               
260-456
               

               
Cow position:
               
chr3:22924452-22924648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
260-714
               

               
Cow position:
               
chr3:76188643-76188184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
262-617
               

               
Cow position:
               
chr3:6853550-6853913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
274-550
               

               
Cow position:
               
chr3:22953913-22954192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
6, 40
               

               
Conread position:
               
274-709
               

               
Cow position:
               
chr3:61678639-61678188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 42
               

               
Conread position:
               
275-729
               

               
Cow position:
               
chr3:42423389-42423854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
276-710
               

               
Cow position:
               
chr3:26894604-26894168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
276-717
               

               
Cow position:
               
chr3:46226387-46225974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
277-484
               

               
Cow position:
               
chr3:49731700-49731916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
279-460
               

               
Cow position:
               
chr3:48578771-48578586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
284-495
               

               
Cow position:
               
chr3:55815271-55815054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
111, 8
               

               
Conread position:
               
288-710
               

               
Cow position:
               
chr3:45312979-45312548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
290-493
               

               
Cow position:
               
chr3:56704616-56704825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
95, 24
               

               
Conread position:
               
290-496
               

               
Cow position:
               
chr3:18855023-18854802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
292-679
               

               
Cow position:
               
chr3:52691056-52690652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
294-608
               

               
Cow position:
               
chr3:16004066-16004385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
295-630
               

               
Cow position:
               
chr3:9116819-9116487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
312-717
               

               
Cow position:
               
chr3:62623742-62624144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
315-717
               

               
Cow position:
               
chr3:8556881-8557291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 225
               

               
Conread position:
               
332-585
               

               
Cow position:
               
chr3:68514672-68514927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
77, 133
               

               
Conread position:
               
338-728
               

               
Cow position:
               
chr3:8901300-8900891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 116
               

               
Conread position:
               
357-591
               

               
Cow position:
               
chr3:79271935-79272174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 75
               

               
Conread position:
               
402-546
               

               
Cow position:
               
chr3:50099297-50099154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
58, 133
               
Show alignments to all cow chromosomes.