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Cow genome map

           
Conread name:
           
Spl1-SPL01F070090
        

               
Conread position:
               
59-674
               

               
Cow position:
               
chr29:2984375-2984990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 129
               

               
Conread position:
               
62-637
               

               
Cow position:
               
chr29:13634810-13634235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 197
               

               
Conread position:
               
62-702
               

               
Cow position:
               
chr29:19338482-19339129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 178
               

               
Conread position:
               
169-763
               

               
Cow position:
               
chr29:12679755-12680351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 88
               

               
Conread position:
               
183-542
               

               
Cow position:
               
chr29:4065678-4066057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 204
               

               
Conread position:
               
212-512
               

               
Cow position:
               
chr29:2522224-2522511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 7
               

               
Conread position:
               
281-702
               

               
Cow position:
               
chr29:18085300-18085700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
55, 5
               

               
Conread position:
               
289-767
               

               
Cow position:
               
chr29:40891988-40891510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 259
               

               
Conread position:
               
295-516
               

               
Cow position:
               
chr29:3502785-3502997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
168, 5
               

               
Conread position:
               
297-690
               

               
Cow position:
               
chr29:22936007-22936387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
346, 5
               

               
Conread position:
               
297-756
               

               
Cow position:
               
chr29:16609464-16609936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 5
               

               
Conread position:
               
301-767
               

               
Cow position:
               
chr29:4120575-4121053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
302-584
               

               
Cow position:
               
chr29:24345734-24345437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
37, 224
               

               
Conread position:
               
302-767
               

               
Cow position:
               
chr29:19762002-19762460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 208
               

               
Conread position:
               
308-680
               

               
Cow position:
               
chr29:4194385-4194022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
308-689
               

               
Cow position:
               
chr29:13372399-13372778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
308-764
               

               
Cow position:
               
chr29:31928715-31929180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
309-551
               

               
Cow position:
               
chr29:13553871-13554118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
31, 5
               

               
Conread position:
               
309-767
               

               
Cow position:
               
chr29:40117309-40117762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 31
               

               
Conread position:
               
311-519
               

               
Cow position:
               
chr29:12451111-12451324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
311-547
               

               
Cow position:
               
chr29:32963294-32963533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 5
               

               
Conread position:
               
312-763
               

               
Cow position:
               
chr29:34297825-34297378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
312-765
               

               
Cow position:
               
chr29:10058787-10058348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 83
               

               
Conread position:
               
313-509
               

               
Cow position:
               
chr29:4691945-4691740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
313-516
               

               
Cow position:
               
chr29:32767776-32767578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
159, 19
               

               
Conread position:
               
314-507
               

               
Cow position:
               
chr29:26984973-26985164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
314-767
               

               
Cow position:
               
chr29:5062874-5063340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 228
               

               
Conread position:
               
314-769
               

               
Cow position:
               
chr29:7956242-7955789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
28, 93
               

               
Conread position:
               
315-507
               

               
Cow position:
               
chr29:37785436-37785233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
315-509
               

               
Cow position:
               
chr29:26980138-26980337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
315-551
               

               
Cow position:
               
chr29:3395853-3396085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
21, 98
               

               
Conread position:
               
315-551
               

               
Cow position:
               
chr29:9686258-9686022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
315-568
               

               
Cow position:
               
chr29:35281246-35281492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
148, 28
               

               
Conread position:
               
315-569
               

               
Cow position:
               
chr29:11684755-11685001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
315-581
               

               
Cow position:
               
chr29:26734776-26735036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
25, 112
               

               
Conread position:
               
315-586
               

               
Cow position:
               
chr29:94802-94545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
144, 25
               

               
Conread position:
               
315-586
               

               
Cow position:
               
chr29:12005021-12004750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
315-615
               

               
Cow position:
               
chr29:4328177-4328465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
315-632
               

               
Cow position:
               
chr29:18735900-18735582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 215
               

               
Conread position:
               
315-641
               

               
Cow position:
               
chr29:2071825-2071505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
25, 91
               

               
Conread position:
               
315-641
               

               
Cow position:
               
chr29:9139151-9139487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
25, 112
               

               
Conread position:
               
315-655
               

               
Cow position:
               
chr29:26130526-26130856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 150
               

               
Conread position:
               
315-655
               

               
Cow position:
               
chr29:29974784-29975119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 64
               

               
Conread position:
               
315-672
               

               
Cow position:
               
chr29:39567431-39567780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 105
               

               
Conread position:
               
315-675
               

               
Cow position:
               
chr29:28868374-28868744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 250
               

               
Conread position:
               
315-682
               

               
Cow position:
               
chr29:31926547-31926192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
315-687
               

               
Cow position:
               
chr29:13615900-13615542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
315-697
               

               
Cow position:
               
chr29:707202-706834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
315-698
               

               
Cow position:
               
chr29:36216861-36217236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
315-699
               

               
Cow position:
               
chr29:10156546-10156181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
315-699
               

               
Cow position:
               
chr29:25333710-25333336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
36, 111
               

               
Conread position:
               
315-702
               

               
Cow position:
               
chr29:6844886-6844504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 92
               

               
Conread position:
               
315-702
               

               
Cow position:
               
chr29:26673160-26672791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
155, 28
               

               
Conread position:
               
315-702
               

               
Cow position:
               
chr29:32290345-32290740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
315-723
               

               
Cow position:
               
chr29:87274-86851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
315-749
               

               
Cow position:
               
chr29:19389229-19389659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
21, 70
               

               
Conread position:
               
315-750
               

               
Cow position:
               
chr29:38581712-38582150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
315-760
               

               
Cow position:
               
chr29:21443601-21443151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
315-763
               

               
Cow position:
               
chr29:26778627-26779069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 149
               

               
Conread position:
               
315-764
               

               
Cow position:
               
chr29:20674063-20673614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
20, 207
               

               
Conread position:
               
315-764
               

               
Cow position:
               
chr29:24952429-24952881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
315-765
               

               
Cow position:
               
chr29:1933815-1933375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
21, 113
               

               
Conread position:
               
315-765
               

               
Cow position:
               
chr29:35291842-35292281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
315-766
               

               
Cow position:
               
chr29:34745911-34745465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr29:4875160-4874693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 365
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr29:12784212-12783758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 96
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr29:16657434-16657888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr29:17463036-17462582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 67
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr29:19428411-19428847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr29:28195776-28195336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 220
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr29:35501905-35501468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 107
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr29:36530606-36531063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 200
               

               
Conread position:
               
315-783
               

               
Cow position:
               
chr29:22069004-22068527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
316-512
               

               
Cow position:
               
chr29:40337780-40337588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
316-516
               

               
Cow position:
               
chr29:2188593-2188403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
316-523
               

               
Cow position:
               
chr29:44135717-44135508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
316-569
               

               
Cow position:
               
chr29:35636168-35636427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
316-586
               

               
Cow position:
               
chr29:43312051-43311780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 99
               

               
Conread position:
               
316-682
               

               
Cow position:
               
chr29:6014847-6015234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
316-702
               

               
Cow position:
               
chr29:8926715-8926333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
316-709
               

               
Cow position:
               
chr29:22175437-22175816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
136, 25
               

               
Conread position:
               
316-745
               

               
Cow position:
               
chr29:10456808-10456405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
316-764
               

               
Cow position:
               
chr29:4480428-4479973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 27
               

               
Conread position:
               
316-765
               

               
Cow position:
               
chr29:2744528-2744074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
316-767
               

               
Cow position:
               
chr29:22613179-22613618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 23
               

               
Conread position:
               
316-767
               

               
Cow position:
               
chr29:29769602-29769157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 84
               

               
Conread position:
               
317-586
               

               
Cow position:
               
chr29:32655679-32655417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
318-544
               

               
Cow position:
               
chr29:19792533-19792300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 7
               

               
Conread position:
               
318-702
               

               
Cow position:
               
chr29:11398172-11397799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
318-764
               

               
Cow position:
               
chr29:5892593-5893040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 128
               

               
Conread position:
               
319-585
               

               
Cow position:
               
chr29:44310282-44310016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 86
               

               
Conread position:
               
319-633
               

               
Cow position:
               
chr29:42848974-42849283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
16, 89
               

               
Conread position:
               
319-653
               

               
Cow position:
               
chr29:32521616-32521950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
21, 178
               

               
Conread position:
               
319-672
               

               
Cow position:
               
chr29:6293720-6293381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
21, 71
               

               
Conread position:
               
319-745
               

               
Cow position:
               
chr29:21933366-21932946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
17, 101
               

               
Conread position:
               
319-756
               

               
Cow position:
               
chr29:26017764-26017314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
319-757
               

               
Cow position:
               
chr29:39111561-39111137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
319-764
               

               
Cow position:
               
chr29:40583544-40583979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
17, 92
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr29:8164116-8163630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
28, 215
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr29:9709446-9709890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr29:10838697-10839136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 102
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr29:17109717-17110150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 96
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr29:31594368-31593960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr29:45005869-45005436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
320-682
               

               
Cow position:
               
chr29:9911925-9912283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 82
               

               
Conread position:
               
320-714
               

               
Cow position:
               
chr29:1556680-1557073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
320-767
               

               
Cow position:
               
chr29:13028205-13028647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
321-546
               

               
Cow position:
               
chr29:30545113-30544893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
321-648
               

               
Cow position:
               
chr29:40165991-40166319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
322-765
               

               
Cow position:
               
chr29:41530600-41531046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
324-765
               

               
Cow position:
               
chr29:3502308-3502757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 203
               

               
Conread position:
               
325-533
               

               
Cow position:
               
chr29:12798683-12798881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
325-641
               

               
Cow position:
               
chr29:36183029-36183347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
325-671
               

               
Cow position:
               
chr29:23984211-23983858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 208
               

               
Conread position:
               
325-700
               

               
Cow position:
               
chr29:44378665-44378295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 87
               

               
Conread position:
               
325-764
               

               
Cow position:
               
chr29:28197255-28196826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
325-765
               

               
Cow position:
               
chr29:42364261-42363824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
325-767
               

               
Cow position:
               
chr29:25737664-25737223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 103
               

               
Conread position:
               
326-673
               

               
Cow position:
               
chr29:10235361-10235035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
326-682
               

               
Cow position:
               
chr29:17607170-17607524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 153
               

               
Conread position:
               
326-693
               

               
Cow position:
               
chr29:20903534-20903171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 188
               

               
Conread position:
               
327-533
               

               
Cow position:
               
chr29:42406418-42406634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
104, 96
               

               
Conread position:
               
328-787
               

               
Cow position:
               
chr29:11562370-11562843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 102
               

               
Conread position:
               
329-578
               

               
Cow position:
               
chr29:6472074-6472319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
101, 72
               

               
Conread position:
               
329-625
               

               
Cow position:
               
chr29:41747197-41747498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
7, 84
               

               
Conread position:
               
329-652
               

               
Cow position:
               
chr29:14615499-14615184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
127, 19
               

               
Conread position:
               
331-512
               

               
Cow position:
               
chr29:10659589-10659397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
332-765
               

               
Cow position:
               
chr29:3711148-3711571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
132, 91
               

               
Conread position:
               
334-767
               

               
Cow position:
               
chr29:23697742-23698167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 77
               

               
Conread position:
               
335-523
               

               
Cow position:
               
chr29:11787557-11787748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
335-533
               

               
Cow position:
               
chr29:19907121-19907317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 31
               

               
Conread position:
               
335-641
               

               
Cow position:
               
chr29:17668260-17668553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
89, 123
               

               
Conread position:
               
335-648
               

               
Cow position:
               
chr29:24103784-24103466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 186
               

               
Conread position:
               
335-684
               

               
Cow position:
               
chr29:26615960-26615607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 80
               

               
Conread position:
               
335-702
               

               
Cow position:
               
chr29:13639602-13639240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 59
               

               
Conread position:
               
335-763
               

               
Cow position:
               
chr29:34773963-34773556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
335-764
               

               
Cow position:
               
chr29:2623715-2623286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 149
               

               
Conread position:
               
335-764
               

               
Cow position:
               
chr29:6925784-6926175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
127, 58
               

               
Conread position:
               
335-765
               

               
Cow position:
               
chr29:699850-699433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
125, 23
               

               
Conread position:
               
335-765
               

               
Cow position:
               
chr29:23874224-23874657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 88
               

               
Conread position:
               
335-765
               

               
Cow position:
               
chr29:35677778-35677346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 15
               

               
Conread position:
               
335-766
               

               
Cow position:
               
chr29:4520100-4520526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 84
               

               
Conread position:
               
335-766
               

               
Cow position:
               
chr29:22714963-22714514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 194
               

               
Conread position:
               
335-767
               

               
Cow position:
               
chr29:11915581-11916018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 202
               

               
Conread position:
               
335-767
               

               
Cow position:
               
chr29:16309515-16309918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
133, 59
               

               
Conread position:
               
335-767
               

               
Cow position:
               
chr29:19949074-19949502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 123
               

               
Conread position:
               
335-782
               

               
Cow position:
               
chr29:22162486-22162052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 91
               

               
Conread position:
               
336-512
               

               
Cow position:
               
chr29:42886146-42886328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
337-751
               

               
Cow position:
               
chr29:19254056-19253648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
123, 80
               

               
Conread position:
               
337-759
               

               
Cow position:
               
chr29:1395372-1395761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
123, 48
               

               
Conread position:
               
338-766
               

               
Cow position:
               
chr29:40763917-40763500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 161
               

               
Conread position:
               
341-697
               

               
Cow position:
               
chr29:6286387-6286038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
345-767
               

               
Cow position:
               
chr29:38580752-38581189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
347-767
               

               
Cow position:
               
chr29:23155027-23155432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
292, 69
               

               
Conread position:
               
348-641
               

               
Cow position:
               
chr29:26986720-26986995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
350-682
               

               
Cow position:
               
chr29:463874-463544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
185, 69
               

               
Conread position:
               
350-702
               

               
Cow position:
               
chr29:28166438-28166094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
350-752
               

               
Cow position:
               
chr29:5109431-5109001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
74, 260
               

               
Conread position:
               
353-679
               

               
Cow position:
               
chr29:28446477-28446151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 230
               

               
Conread position:
               
354-767
               

               
Cow position:
               
chr29:31489103-31489521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
355-615
               

               
Cow position:
               
chr29:14484761-14484497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
356-578
               

               
Cow position:
               
chr29:8190676-8190462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
183, 72
               

               
Conread position:
               
356-763
               

               
Cow position:
               
chr29:30440711-30441132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
104, 46
               

               
Conread position:
               
360-765
               

               
Cow position:
               
chr29:6337452-6337845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
95, 51
               

               
Conread position:
               
363-638
               

               
Cow position:
               
chr29:41364902-41365172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
59, 43
               

               
Conread position:
               
363-767
               

               
Cow position:
               
chr29:22778389-22777984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 183
               

               
Conread position:
               
364-693
               

               
Cow position:
               
chr29:43251370-43251046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
107, 39
               

               
Conread position:
               
367-751
               

               
Cow position:
               
chr29:17154572-17154943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
89, 36
               

               
Conread position:
               
367-767
               

               
Cow position:
               
chr29:1022086-1022491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
57, 194
               

               
Conread position:
               
368-687
               

               
Cow position:
               
chr29:43009287-43008971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 164
               

               
Conread position:
               
371-655
               

               
Cow position:
               
chr29:3100461-3100185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
53, 160
               

               
Conread position:
               
371-734
               

               
Cow position:
               
chr29:9718972-9718611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 116
               

               
Conread position:
               
371-765
               

               
Cow position:
               
chr29:25091910-25092299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
371-767
               

               
Cow position:
               
chr29:10818636-10818263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
373-711
               

               
Cow position:
               
chr29:11054051-11053723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
374-527
               

               
Cow position:
               
chr29:26508290-26508449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
378-586
               

               
Cow position:
               
chr29:30188533-30188325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
84, 48
               

               
Conread position:
               
378-767
               

               
Cow position:
               
chr29:26275421-26275798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 87
               

               
Conread position:
               
379-702
               

               
Cow position:
               
chr29:32211251-32210943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 128
               

               
Conread position:
               
379-767
               

               
Cow position:
               
chr29:19125152-19125527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
380-754
               

               
Cow position:
               
chr29:44988972-44988620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
76, 48
               

               
Conread position:
               
381-699
               

               
Cow position:
               
chr29:11646914-11647219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
177, 32
               

               
Conread position:
               
382-703
               

               
Cow position:
               
chr29:4334539-4334846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
383-767
               

               
Cow position:
               
chr29:14838998-14838610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 92
               

               
Conread position:
               
385-765
               

               
Cow position:
               
chr29:20910886-20910495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
39, 161
               

               
Conread position:
               
386-767
               

               
Cow position:
               
chr29:41113045-41112693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
388-763
               

               
Cow position:
               
chr29:37618123-37618501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
391-763
               

               
Cow position:
               
chr29:43099925-43099556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
396-605
               

               
Cow position:
               
chr29:40615701-40615488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 149
               

               
Conread position:
               
398-654
               

               
Cow position:
               
chr29:44682273-44682023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
29, 132
               

               
Conread position:
               
400-767
               

               
Cow position:
               
chr29:5409321-5408945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 128
               

               
Conread position:
               
400-767
               

               
Cow position:
               
chr29:17296961-17297335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
402-585
               

               
Cow position:
               
chr29:456966-456777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 134
               

               
Conread position:
               
402-655
               

               
Cow position:
               
chr29:29942905-29942645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 189
               

               
Conread position:
               
402-750
               

               
Cow position:
               
chr29:27826353-27826685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
402-767
               

               
Cow position:
               
chr29:25815004-25814638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
241, 16
               

               
Conread position:
               
405-702
               

               
Cow position:
               
chr29:23244049-23243750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 125
               

               
Conread position:
               
407-767
               

               
Cow position:
               
chr29:22029106-22028764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
409-765
               

               
Cow position:
               
chr29:31674465-31674826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 104
               

               
Conread position:
               
416-718
               

               
Cow position:
               
chr29:12025629-12025328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
8, 176
               

               
Conread position:
               
421-702
               

               
Cow position:
               
chr29:29314807-29314532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
49, 169
               

               
Conread position:
               
423-767
               

               
Cow position:
               
chr29:35084373-35084026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 105
               

               
Conread position:
               
429-655
               

               
Cow position:
               
chr29:29795532-29795300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
429-765
               

               
Cow position:
               
chr29:16272581-16272939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 174
               

               
Conread position:
               
434-683
               

               
Cow position:
               
chr29:27329753-27330001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 107
               

               
Conread position:
               
436-687
               

               
Cow position:
               
chr29:4002759-4003005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
35, 51
               

               
Conread position:
               
445-751
               

               
Cow position:
               
chr29:34359108-34358797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
454-677
               

               
Cow position:
               
chr29:12626098-12625873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
454-767
               

               
Cow position:
               
chr29:7624059-7624362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
459-767
               

               
Cow position:
               
chr29:5520617-5520287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 217
               

               
Conread position:
               
460-765
               

               
Cow position:
               
chr29:26477428-26477739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
117, 128
               

               
Conread position:
               
461-697
               

               
Cow position:
               
chr29:847751-847519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
162, 55
               

               
Conread position:
               
462-764
               

               
Cow position:
               
chr29:1007707-1008014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
73, 118
               

               
Conread position:
               
462-765
               

               
Cow position:
               
chr29:3825864-3826161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
47, 37
               

               
Conread position:
               
462-767
               

               
Cow position:
               
chr29:5046543-5046850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
177, 79
               

               
Conread position:
               
466-767
               

               
Cow position:
               
chr29:3685617-3685324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
155, 51
               

               
Conread position:
               
469-676
               

               
Cow position:
               
chr29:24578756-24578965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
40, 121
               

               
Conread position:
               
470-767
               

               
Cow position:
               
chr29:1614824-1615124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
62, 108
               

               
Conread position:
               
478-767
               

               
Cow position:
               
chr29:21665994-21666283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
161, 49
               

               
Conread position:
               
480-765
               

               
Cow position:
               
chr29:15947080-15947364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
485-765
               

               
Cow position:
               
chr29:32894182-32894452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
105, 43
               

               
Conread position:
               
486-767
               

               
Cow position:
               
chr29:20770258-20770541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
56, 103
               

               
Conread position:
               
487-702
               

               
Cow position:
               
chr29:40873924-40874138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
155, 101
               

               
Conread position:
               
491-676
               

               
Cow position:
               
chr29:18012474-18012660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
493-767
               

               
Cow position:
               
chr29:36952378-36952115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
494-782
               

               
Cow position:
               
chr29:22167158-22166875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
495-709
               

               
Cow position:
               
chr29:28840077-28840289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
148, 108
               

               
Conread position:
               
496-767
               

               
Cow position:
               
chr29:23220577-23220293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 31
               

               
Conread position:
               
501-767
               

               
Cow position:
               
chr29:18450205-18449941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
142, 27
               

               
Conread position:
               
504-712
               

               
Cow position:
               
chr29:38978462-38978671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
176, 84
               

               
Conread position:
               
505-762
               

               
Cow position:
               
chr29:44139312-44139053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
136, 83
               

               
Conread position:
               
505-767
               

               
Cow position:
               
chr29:38980137-38979883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
89, 23
               

               
Conread position:
               
531-765
               

               
Cow position:
               
chr29:31651368-31651597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
90, 60
               

               
Conread position:
               
533-756
               

               
Cow position:
               
chr29:29324461-29324234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
171, 55
               

               
Conread position:
               
536-751
               

               
Cow position:
               
chr29:23825248-23825031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
107, 52
               

               
Conread position:
               
536-764
               

               
Cow position:
               
chr29:4070590-4070814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
107, 51
               

               
Conread position:
               
538-767
               

               
Cow position:
               
chr29:396377-396599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
107, 45
               

               
Conread position:
               
541-697
               

               
Cow position:
               
chr29:34687802-34687958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
98, 47
               

               
Conread position:
               
541-767
               

               
Cow position:
               
chr29:26540573-26540343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
102, 47
               

               
Conread position:
               
542-757
               

               
Cow position:
               
chr29:17804503-17804717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
543-765
               

               
Cow position:
               
chr29:42630090-42630312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
162, 49
               

               
Conread position:
               
543-773
               

               
Cow position:
               
chr29:36357098-36357331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
545-764
               

               
Cow position:
               
chr29:31934350-31934570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
548-762
               

               
Cow position:
               
chr29:34359847-34359632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
549-751
               

               
Cow position:
               
chr29:22723576-22723777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
556-765
               

               
Cow position:
               
chr29:3292930-3293138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
556-765
               

               
Cow position:
               
chr29:38754957-38754743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 31
               

               
Conread position:
               
556-767
               

               
Cow position:
               
chr29:36781322-36781113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
557-765
               

               
Cow position:
               
chr29:32656110-32655899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
559-766
               

               
Cow position:
               
chr29:7290761-7290966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
559-767
               

               
Cow position:
               
chr29:29308587-29308385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
12, 30
               

               
Conread position:
               
560-758
               

               
Cow position:
               
chr29:4423453-4423262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
83, 31
               

               
Conread position:
               
560-767
               

               
Cow position:
               
chr29:9378623-9378832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
563-767
               

               
Cow position:
               
chr29:19363700-19363905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
564-764
               

               
Cow position:
               
chr29:16278978-16279171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
564-764
               

               
Cow position:
               
chr29:22729558-22729759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
26, 33
               

               
Conread position:
               
573-767
               

               
Cow position:
               
chr29:19420614-19420423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
575-767
               

               
Cow position:
               
chr29:12890686-12890873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
575-782
               

               
Cow position:
               
chr29:27811968-27812174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
584-783
               

               
Cow position:
               
chr29:39638851-39639055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
588-770
               

               
Cow position:
               
chr29:40351062-40350880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
594-764
               

               
Cow position:
               
chr29:17282087-17282255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 54
               

               
Conread position:
               
596-739
               

               
Cow position:
               
chr29:34688885-34688741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
597-765
               

               
Cow position:
               
chr29:27929790-27929960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
597-767
               

               
Cow position:
               
chr29:936229-936400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 63
               

               
Conread position:
               
598-766
               

               
Cow position:
               
chr29:19741864-19742027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
601-757
               

               
Cow position:
               
chr29:23913367-23913210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
601-765
               

               
Cow position:
               
chr29:14746806-14746973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
601-765
               

               
Cow position:
               
chr29:25793172-25793336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 56
               

               
Conread position:
               
602-767
               

               
Cow position:
               
chr29:4441177-4441008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
603-760
               

               
Cow position:
               
chr29:22335201-22335035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
603-767
               

               
Cow position:
               
chr29:14576887-14577054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 57
               

               
Conread position:
               
606-761
               

               
Cow position:
               
chr29:41223196-41223355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
607-767
               

               
Cow position:
               
chr29:33143322-33143159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 49
               

               
Conread position:
               
608-766
               

               
Cow position:
               
chr29:23678742-23678897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 52
               

               
Conread position:
               
609-767
               

               
Cow position:
               
chr29:7414535-7414691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
613-767
               

               
Cow position:
               
chr29:24660723-24660874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
30, 47
               

               
Conread position:
               
620-767
               

               
Cow position:
               
chr29:40112427-40112576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
623-767
               

               
Cow position:
               
chr29:36546734-36546585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
631-767
               

               
Cow position:
               
chr29:25669150-25669280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 32
               

               
Conread position:
               
645-767
               

               
Cow position:
               
chr29:659354-659478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
645-767
               

               
Cow position:
               
chr29:31378164-31378281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               
Show alignments to all cow chromosomes.