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Cow genome map

           
Conread name:
           
Spl1-SPL01F070090
        

               
Conread position:
               
59-691
               

               
Cow position:
               
chr9:8338559-8337937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 200
               

               
Conread position:
               
59-764
               

               
Cow position:
               
chr9:34689080-34689771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
59-765
               

               
Cow position:
               
chr9:15215152-15215857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 75
               

               
Conread position:
               
62-579
               

               
Cow position:
               
chr9:35305577-35306096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 214
               

               
Conread position:
               
62-695
               

               
Cow position:
               
chr9:17310029-17310654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
62-767
               

               
Cow position:
               
chr9:9402660-9403340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 121
               

               
Conread position:
               
66-763
               

               
Cow position:
               
chr9:10143932-10144646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 475
               

               
Conread position:
               
147-510
               

               
Cow position:
               
chr9:26311017-26310643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
164-767
               

               
Cow position:
               
chr9:19068226-19067600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 105
               

               
Conread position:
               
175-767
               

               
Cow position:
               
chr9:56453742-56453177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 91
               

               
Conread position:
               
182-699
               

               
Cow position:
               
chr9:40542532-40542040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 140
               

               
Conread position:
               
197-691
               

               
Cow position:
               
chr9:50076459-50075974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
208-723
               

               
Cow position:
               
chr9:41514000-41513512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
268-641
               

               
Cow position:
               
chr9:9823187-9823545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
72, 133
               

               
Conread position:
               
286-767
               

               
Cow position:
               
chr9:20900817-20901287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 121
               

               
Conread position:
               
288-525
               

               
Cow position:
               
chr9:16745985-16745749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
288-653
               

               
Cow position:
               
chr9:24997205-24997570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
293-639
               

               
Cow position:
               
chr9:35850204-35849867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 6
               

               
Conread position:
               
295-501
               

               
Cow position:
               
chr9:3924920-3924718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
296-532
               

               
Cow position:
               
chr9:32812649-32812410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 6
               

               
Conread position:
               
296-763
               

               
Cow position:
               
chr9:58451796-58452235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 6
               

               
Conread position:
               
296-765
               

               
Cow position:
               
chr9:8997859-8997390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
40, 6
               

               
Conread position:
               
297-533
               

               
Cow position:
               
chr9:27697427-27697661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
43, 6
               

               
Conread position:
               
297-626
               

               
Cow position:
               
chr9:3411070-3410758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
46, 5
               

               
Conread position:
               
297-699
               

               
Cow position:
               
chr9:46316486-46316879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 5
               

               
Conread position:
               
298-697
               

               
Cow position:
               
chr9:18343024-18342635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 129
               

               
Conread position:
               
301-551
               

               
Cow position:
               
chr9:5621731-5621988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
302-504
               

               
Cow position:
               
chr9:1350148-1350352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 117
               

               
Conread position:
               
302-550
               

               
Cow position:
               
chr9:50544335-50544580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
34, 109
               

               
Conread position:
               
302-607
               

               
Cow position:
               
chr9:64516799-64517106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
302-682
               

               
Cow position:
               
chr9:37069269-37069640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 129
               

               
Conread position:
               
302-756
               

               
Cow position:
               
chr9:29184836-29185298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 118
               

               
Conread position:
               
307-575
               

               
Cow position:
               
chr9:18002656-18002928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
308-677
               

               
Cow position:
               
chr9:34468301-34468655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 59
               

               
Conread position:
               
309-760
               

               
Cow position:
               
chr9:32732391-32732826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
16, 110
               

               
Conread position:
               
311-545
               

               
Cow position:
               
chr9:27076963-27077191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
311-646
               

               
Cow position:
               
chr9:17929061-17928711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
28, 7
               

               
Conread position:
               
311-763
               

               
Cow position:
               
chr9:19903341-19902927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
313-512
               

               
Cow position:
               
chr9:10666738-10666939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
27, 149
               

               
Conread position:
               
313-696
               

               
Cow position:
               
chr9:47906003-47906374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 88
               

               
Conread position:
               
313-762
               

               
Cow position:
               
chr9:28726439-28726893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
314-512
               

               
Cow position:
               
chr9:5161783-5161978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
146, 14
               

               
Conread position:
               
314-764
               

               
Cow position:
               
chr9:6192173-6192623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 218
               

               
Conread position:
               
314-764
               

               
Cow position:
               
chr9:41680020-41679596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
314-767
               

               
Cow position:
               
chr9:17871822-17872276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
314-767
               

               
Cow position:
               
chr9:30138411-30137954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
315-505
               

               
Cow position:
               
chr9:20318792-20318986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
315-505
               

               
Cow position:
               
chr9:35101152-35100961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 112
               

               
Conread position:
               
315-508
               

               
Cow position:
               
chr9:20393843-20394028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 70
               

               
Conread position:
               
315-509
               

               
Cow position:
               
chr9:38184193-38184395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
315-512
               

               
Cow position:
               
chr9:3070138-3070334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
27, 98
               

               
Conread position:
               
315-515
               

               
Cow position:
               
chr9:3379397-3379206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
315-517
               

               
Cow position:
               
chr9:49279736-49279556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
153, 25
               

               
Conread position:
               
315-523
               

               
Cow position:
               
chr9:27052048-27052262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
315-523
               

               
Cow position:
               
chr9:34310319-34310102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
315-523
               

               
Cow position:
               
chr9:48343886-48343677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
315-533
               

               
Cow position:
               
chr9:45170884-45171101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 81
               

               
Conread position:
               
315-533
               

               
Cow position:
               
chr9:53608109-53608329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
315-539
               

               
Cow position:
               
chr9:22227800-22228023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
315-550
               

               
Cow position:
               
chr9:5141359-5141126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
315-551
               

               
Cow position:
               
chr9:36067190-36066955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
25, 124
               

               
Conread position:
               
315-551
               

               
Cow position:
               
chr9:37528741-37528501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
315-567
               

               
Cow position:
               
chr9:4928914-4928659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 214
               

               
Conread position:
               
315-567
               

               
Cow position:
               
chr9:49404039-49403793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
315-585
               

               
Cow position:
               
chr9:34000328-34000604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 201
               

               
Conread position:
               
315-585
               

               
Cow position:
               
chr9:57951044-57951305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
315-621
               

               
Cow position:
               
chr9:22361299-22360991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
315-629
               

               
Cow position:
               
chr9:9416122-9416422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
315-632
               

               
Cow position:
               
chr9:38344180-38343860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 279
               

               
Conread position:
               
315-640
               

               
Cow position:
               
chr9:8951187-8950866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
315-654
               

               
Cow position:
               
chr9:22114348-22114689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 122
               

               
Conread position:
               
315-654
               

               
Cow position:
               
chr9:35904466-35904799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
25, 100
               

               
Conread position:
               
315-678
               

               
Cow position:
               
chr9:5510009-5509649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 193
               

               
Conread position:
               
315-680
               

               
Cow position:
               
chr9:28983466-28983104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 91
               

               
Conread position:
               
315-682
               

               
Cow position:
               
chr9:38961152-38961509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
22, 97
               

               
Conread position:
               
315-682
               

               
Cow position:
               
chr9:55321930-55321556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
315-690
               

               
Cow position:
               
chr9:5763345-5763719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 181
               

               
Conread position:
               
315-690
               

               
Cow position:
               
chr9:53412964-53413327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
21, 149
               

               
Conread position:
               
315-691
               

               
Cow position:
               
chr9:55084012-55084391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
315-692
               

               
Cow position:
               
chr9:32371475-32371844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 107
               

               
Conread position:
               
315-692
               

               
Cow position:
               
chr9:43871257-43870884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
315-696
               

               
Cow position:
               
chr9:7634553-7634176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
315-698
               

               
Cow position:
               
chr9:62442566-62442193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
315-699
               

               
Cow position:
               
chr9:33681963-33681561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
140, 25
               

               
Conread position:
               
315-699
               

               
Cow position:
               
chr9:51205006-51204636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 25
               

               
Conread position:
               
315-699
               

               
Cow position:
               
chr9:55074852-55075225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
315-699
               

               
Cow position:
               
chr9:64155571-64155949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 207
               

               
Conread position:
               
315-700
               

               
Cow position:
               
chr9:44467064-44467441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
21, 206
               

               
Conread position:
               
315-702
               

               
Cow position:
               
chr9:10308722-10309097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
22, 113
               

               
Conread position:
               
315-702
               

               
Cow position:
               
chr9:22696501-22696122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
20, 90
               

               
Conread position:
               
315-702
               

               
Cow position:
               
chr9:33093229-33092855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
315-709
               

               
Cow position:
               
chr9:42445700-42446090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 26
               

               
Conread position:
               
315-713
               

               
Cow position:
               
chr9:64091973-64091571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 275
               

               
Conread position:
               
315-714
               

               
Cow position:
               
chr9:61997311-61997715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 208
               

               
Conread position:
               
315-736
               

               
Cow position:
               
chr9:18072833-18073225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
24, 91
               

               
Conread position:
               
315-749
               

               
Cow position:
               
chr9:15982793-15983226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
315-751
               

               
Cow position:
               
chr9:30402135-30402582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 93
               

               
Conread position:
               
315-752
               

               
Cow position:
               
chr9:29006845-29006405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
315-753
               

               
Cow position:
               
chr9:18215629-18216067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
315-760
               

               
Cow position:
               
chr9:4630387-4629947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
315-762
               

               
Cow position:
               
chr9:32306955-32307398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
315-762
               

               
Cow position:
               
chr9:33218667-33219121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
315-763
               

               
Cow position:
               
chr9:6933787-6934246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
315-763
               

               
Cow position:
               
chr9:33823376-33822952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 33
               

               
Conread position:
               
315-763
               

               
Cow position:
               
chr9:63784640-63785074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
315-764
               

               
Cow position:
               
chr9:5393335-5392907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 229
               

               
Conread position:
               
315-764
               

               
Cow position:
               
chr9:5442274-5441845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
315-764
               

               
Cow position:
               
chr9:42498114-42497662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 106
               

               
Conread position:
               
315-764
               

               
Cow position:
               
chr9:49764941-49764479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 100
               

               
Conread position:
               
315-764
               

               
Cow position:
               
chr9:52407455-52407004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
315-765
               

               
Cow position:
               
chr9:8998640-8998186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
315-765
               

               
Cow position:
               
chr9:25964539-25965007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
21, 236
               

               
Conread position:
               
315-765
               

               
Cow position:
               
chr9:41416635-41416163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
25, 89
               

               
Conread position:
               
315-765
               

               
Cow position:
               
chr9:50976961-50977423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
315-766
               

               
Cow position:
               
chr9:20848221-20847778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
315-766
               

               
Cow position:
               
chr9:59013050-59013506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:5327536-5327093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 26
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:5501134-5500695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:6397501-6397955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:7410067-7409608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 114
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:9516486-9516917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 89
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:9552372-9551919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:13670922-13670467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 182
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:20091323-20090891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:21459872-21460322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 99
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:25546918-25546488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:26278892-26279342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:26344700-26345131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:28747237-28747687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:28773402-28772972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:32676967-32676508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:45285246-45285708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:55256265-55256718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
315-767
               

               
Cow position:
               
chr9:61022895-61022450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
315-768
               

               
Cow position:
               
chr9:11299412-11299843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
315-803
               

               
Cow position:
               
chr9:6952375-6951909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
316-533
               

               
Cow position:
               
chr9:58439498-58439714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
316-551
               

               
Cow position:
               
chr9:26391048-26390818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
136, 24
               

               
Conread position:
               
316-579
               

               
Cow position:
               
chr9:34666692-34666442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
316-586
               

               
Cow position:
               
chr9:20989170-20989435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
26, 105
               

               
Conread position:
               
316-626
               

               
Cow position:
               
chr9:1951986-1952294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
316-629
               

               
Cow position:
               
chr9:35533668-35533980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
24, 108
               

               
Conread position:
               
316-654
               

               
Cow position:
               
chr9:54437536-54437209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
316-697
               

               
Cow position:
               
chr9:54528799-54528418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 134
               

               
Conread position:
               
316-702
               

               
Cow position:
               
chr9:9405771-9406154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
316-702
               

               
Cow position:
               
chr9:36445905-36445519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
316-714
               

               
Cow position:
               
chr9:9199501-9199892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 88
               

               
Conread position:
               
316-736
               

               
Cow position:
               
chr9:57896841-57897241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 90
               

               
Conread position:
               
316-756
               

               
Cow position:
               
chr9:34957768-34958210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 182
               

               
Conread position:
               
316-762
               

               
Cow position:
               
chr9:52578249-52578703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 173
               

               
Conread position:
               
316-763
               

               
Cow position:
               
chr9:22151804-22152247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 96
               

               
Conread position:
               
316-765
               

               
Cow position:
               
chr9:648059-647606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
316-765
               

               
Cow position:
               
chr9:7866349-7865904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
316-767
               

               
Cow position:
               
chr9:5226881-5227329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 253
               

               
Conread position:
               
316-767
               

               
Cow position:
               
chr9:5433915-5433476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 24
               

               
Conread position:
               
316-767
               

               
Cow position:
               
chr9:20579342-20579757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
210, 23
               

               
Conread position:
               
316-767
               

               
Cow position:
               
chr9:31640034-31640496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
21, 277
               

               
Conread position:
               
316-767
               

               
Cow position:
               
chr9:50606669-50607099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 101
               

               
Conread position:
               
316-770
               

               
Cow position:
               
chr9:31347237-31346777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 98
               

               
Conread position:
               
317-763
               

               
Cow position:
               
chr9:18381143-18380703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 105
               

               
Conread position:
               
317-763
               

               
Cow position:
               
chr9:20681124-20681567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
318-586
               

               
Cow position:
               
chr9:1712206-1712461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
144, 23
               

               
Conread position:
               
319-504
               

               
Cow position:
               
chr9:22616900-22616719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
143, 16
               

               
Conread position:
               
319-512
               

               
Cow position:
               
chr9:5532233-5532034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
319-512
               

               
Cow position:
               
chr9:10877585-10877785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
21, 106
               

               
Conread position:
               
319-549
               

               
Cow position:
               
chr9:54997742-54997980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
319-568
               

               
Cow position:
               
chr9:60037936-60037683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
319-641
               

               
Cow position:
               
chr9:41789555-41789245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
152, 13
               

               
Conread position:
               
319-651
               

               
Cow position:
               
chr9:35375702-35375375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
143, 22
               

               
Conread position:
               
319-671
               

               
Cow position:
               
chr9:29684426-29684074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
319-674
               

               
Cow position:
               
chr9:49689218-49688890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
319-682
               

               
Cow position:
               
chr9:63746085-63745734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
17, 98
               

               
Conread position:
               
319-687
               

               
Cow position:
               
chr9:5218899-5219258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
319-687
               

               
Cow position:
               
chr9:19714351-19713994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
22, 78
               

               
Conread position:
               
319-702
               

               
Cow position:
               
chr9:9461374-9461755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 106
               

               
Conread position:
               
319-717
               

               
Cow position:
               
chr9:21888450-21888054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
319-759
               

               
Cow position:
               
chr9:22443331-22443784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 235
               

               
Conread position:
               
319-764
               

               
Cow position:
               
chr9:41283309-41282846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
319-765
               

               
Cow position:
               
chr9:22318619-22318194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
319-765
               

               
Cow position:
               
chr9:29825310-29824850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
319-765
               

               
Cow position:
               
chr9:34697015-34697469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr9:1751616-1751160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 107
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr9:9443317-9443771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
21, 101
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr9:13169390-13169834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 28
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr9:20816122-20815697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
320, 21
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr9:51566207-51566667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
319-767
               

               
Cow position:
               
chr9:55796035-55795589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 24
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chr9:58204943-58204759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
320-700
               

               
Cow position:
               
chr9:28354813-28354418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
16, 116
               

               
Conread position:
               
320-748
               

               
Cow position:
               
chr9:824235-823809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
320-764
               

               
Cow position:
               
chr9:36490615-36491070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
320-767
               

               
Cow position:
               
chr9:24887477-24887036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 21
               

               
Conread position:
               
321-586
               

               
Cow position:
               
chr9:10092115-10092379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
321-696
               

               
Cow position:
               
chr9:21030595-21030214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
15, 223
               

               
Conread position:
               
321-701
               

               
Cow position:
               
chr9:17410910-17411293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
99, 19
               

               
Conread position:
               
321-765
               

               
Cow position:
               
chr9:15805642-15806093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 176
               

               
Conread position:
               
322-641
               

               
Cow position:
               
chr9:5209857-5209541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 21
               

               
Conread position:
               
322-764
               

               
Cow position:
               
chr9:35167447-35167003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
324-757
               

               
Cow position:
               
chr9:52484641-52485071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 97
               

               
Conread position:
               
324-767
               

               
Cow position:
               
chr9:9573608-9573151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
100, 30
               

               
Conread position:
               
324-767
               

               
Cow position:
               
chr9:51620711-51620275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
325-512
               

               
Cow position:
               
chr9:4128508-4128697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
325-551
               

               
Cow position:
               
chr9:42998196-42998421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
325-649
               

               
Cow position:
               
chr9:44108555-44108882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
325-699
               

               
Cow position:
               
chr9:50080771-50081138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 86
               

               
Conread position:
               
325-699
               

               
Cow position:
               
chr9:56773354-56772978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
325-702
               

               
Cow position:
               
chr9:8288893-8288517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 89
               

               
Conread position:
               
325-714
               

               
Cow position:
               
chr9:14796504-14796884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
325-763
               

               
Cow position:
               
chr9:9723608-9724044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
325-764
               

               
Cow position:
               
chr9:34901842-34902263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 60
               

               
Conread position:
               
325-766
               

               
Cow position:
               
chr9:38793294-38792847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 217
               

               
Conread position:
               
327-512
               

               
Cow position:
               
chr9:61846877-61847064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
327-676
               

               
Cow position:
               
chr9:24873122-24872761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 184
               

               
Conread position:
               
327-708
               

               
Cow position:
               
chr9:31078812-31079186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 14
               

               
Conread position:
               
328-586
               

               
Cow position:
               
chr9:29034768-29035021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
9, 79
               

               
Conread position:
               
328-764
               

               
Cow position:
               
chr9:55118350-55117916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
329-641
               

               
Cow position:
               
chr9:1950190-1949878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
329-767
               

               
Cow position:
               
chr9:34374659-34375096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 61
               

               
Conread position:
               
330-508
               

               
Cow position:
               
chr9:16182221-16182399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
6, 76
               

               
Conread position:
               
331-561
               

               
Cow position:
               
chr9:41653058-41652826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 201
               

               
Conread position:
               
333-740
               

               
Cow position:
               
chr9:17740679-17741083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 184
               

               
Conread position:
               
333-753
               

               
Cow position:
               
chr9:38846084-38846496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
91, 125
               

               
Conread position:
               
333-764
               

               
Cow position:
               
chr9:8724061-8723629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 100
               

               
Conread position:
               
334-659
               

               
Cow position:
               
chr9:28948116-28947804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
305, 77
               

               
Conread position:
               
334-759
               

               
Cow position:
               
chr9:9753131-9753563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
335-508
               

               
Cow position:
               
chr9:9491056-9490881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
129, 57
               

               
Conread position:
               
335-533
               

               
Cow position:
               
chr9:23541155-23541342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
132, 59
               

               
Conread position:
               
335-550
               

               
Cow position:
               
chr9:41995977-41995760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 208
               

               
Conread position:
               
335-616
               

               
Cow position:
               
chr9:6225189-6225469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 88
               

               
Conread position:
               
335-696
               

               
Cow position:
               
chr9:64050292-64050656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
38, 89
               

               
Conread position:
               
335-701
               

               
Cow position:
               
chr9:8534420-8534798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 86
               

               
Conread position:
               
335-702
               

               
Cow position:
               
chr9:1520468-1520840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
335-702
               

               
Cow position:
               
chr9:11068206-11068580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
335-703
               

               
Cow position:
               
chr9:64559624-64559984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
120, 84
               

               
Conread position:
               
335-736
               

               
Cow position:
               
chr9:8546581-8546200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 83
               

               
Conread position:
               
335-756
               

               
Cow position:
               
chr9:10011063-10010654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
120, 74
               

               
Conread position:
               
335-760
               

               
Cow position:
               
chr9:5836425-5835988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
94, 88
               

               
Conread position:
               
335-764
               

               
Cow position:
               
chr9:64637808-64637386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 98
               

               
Conread position:
               
335-765
               

               
Cow position:
               
chr9:43207116-43207545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
335-767
               

               
Cow position:
               
chr9:10118402-10118835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 86
               

               
Conread position:
               
335-767
               

               
Cow position:
               
chr9:33598244-33597804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 84
               

               
Conread position:
               
335-767
               

               
Cow position:
               
chr9:34287057-34286629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
335-780
               

               
Cow position:
               
chr9:23388415-23388859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
336-507
               

               
Cow position:
               
chr9:34919004-34919171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 83
               

               
Conread position:
               
336-639
               

               
Cow position:
               
chr9:63905342-63905644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
88, 197
               

               
Conread position:
               
337-767
               

               
Cow position:
               
chr9:40302861-40303304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 198
               

               
Conread position:
               
338-532
               

               
Cow position:
               
chr9:38875314-38875509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
86, 73
               

               
Conread position:
               
341-702
               

               
Cow position:
               
chr9:3782620-3782267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 53
               

               
Conread position:
               
341-767
               

               
Cow position:
               
chr9:58979658-58979235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 203
               

               
Conread position:
               
342-559
               

               
Cow position:
               
chr9:28735735-28735516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 87
               

               
Conread position:
               
342-649
               

               
Cow position:
               
chr9:39577990-39577690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
113, 69
               

               
Conread position:
               
342-764
               

               
Cow position:
               
chr9:9595698-9596116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 84
               

               
Conread position:
               
349-743
               

               
Cow position:
               
chr9:33119633-33120036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 242
               

               
Conread position:
               
351-559
               

               
Cow position:
               
chr9:61493274-61493060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
353-702
               

               
Cow position:
               
chr9:8563086-8562721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 253
               

               
Conread position:
               
353-765
               

               
Cow position:
               
chr9:52131263-52130845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
105, 35
               

               
Conread position:
               
353-767
               

               
Cow position:
               
chr9:43757768-43757375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 64
               

               
Conread position:
               
354-519
               

               
Cow position:
               
chr9:51005131-51004970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
354-679
               

               
Cow position:
               
chr9:766906-767227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
354-764
               

               
Cow position:
               
chr9:64106150-64105737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 23
               

               
Conread position:
               
354-765
               

               
Cow position:
               
chr9:32815882-32815485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
70, 101
               

               
Conread position:
               
354-767
               

               
Cow position:
               
chr9:29092048-29091601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 190
               

               
Conread position:
               
355-585
               

               
Cow position:
               
chr9:40604193-40603961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
122, 68
               

               
Conread position:
               
355-767
               

               
Cow position:
               
chr9:6840254-6839821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 248
               

               
Conread position:
               
359-702
               

               
Cow position:
               
chr9:11319393-11319735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
361-767
               

               
Cow position:
               
chr9:45141368-45141765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 58
               

               
Conread position:
               
362-586
               

               
Cow position:
               
chr9:59507317-59507104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
108, 41
               

               
Conread position:
               
362-753
               

               
Cow position:
               
chr9:3186378-3185974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
62, 179
               

               
Conread position:
               
363-767
               

               
Cow position:
               
chr9:35027938-35028336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
96, 31
               

               
Conread position:
               
365-702
               

               
Cow position:
               
chr9:4267747-4268083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 157
               

               
Conread position:
               
366-570
               

               
Cow position:
               
chr9:31292920-31292720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
366-704
               

               
Cow position:
               
chr9:11313275-11313617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
61, 31
               

               
Conread position:
               
367-609
               

               
Cow position:
               
chr9:32711163-32710922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
367-767
               

               
Cow position:
               
chr9:62724777-62724373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 177
               

               
Conread position:
               
368-764
               

               
Cow position:
               
chr9:6339032-6338627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
56, 225
               

               
Conread position:
               
369-576
               

               
Cow position:
               
chr9:50667653-50667446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 41
               

               
Conread position:
               
371-766
               

               
Cow position:
               
chr9:53762928-53762531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
372-767
               

               
Cow position:
               
chr9:27279544-27279137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
52, 165
               

               
Conread position:
               
375-702
               

               
Cow position:
               
chr9:1973165-1972849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
87, 48
               

               
Conread position:
               
376-559
               

               
Cow position:
               
chr9:32829794-32829968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 41
               

               
Conread position:
               
376-765
               

               
Cow position:
               
chr9:42062338-42061926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 229
               

               
Conread position:
               
377-702
               

               
Cow position:
               
chr9:1938347-1938023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 47
               

               
Conread position:
               
377-764
               

               
Cow position:
               
chr9:48628251-48627857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 6
               

               
Conread position:
               
378-655
               

               
Cow position:
               
chr9:44833745-44834018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 87
               

               
Conread position:
               
378-765
               

               
Cow position:
               
chr9:26440576-26440981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
378-766
               

               
Cow position:
               
chr9:17799850-17799467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
383-676
               

               
Cow position:
               
chr9:19493244-19493541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 211
               

               
Conread position:
               
383-767
               

               
Cow position:
               
chr9:11123277-11123649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 23
               

               
Conread position:
               
386-759
               

               
Cow position:
               
chr9:9815630-9815252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
387-767
               

               
Cow position:
               
chr9:52637945-52638339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
37, 196
               

               
Conread position:
               
388-765
               

               
Cow position:
               
chr9:32019123-32019494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
388-767
               

               
Cow position:
               
chr9:61303217-61302834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 143
               

               
Conread position:
               
394-704
               

               
Cow position:
               
chr9:3738014-3738327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 130
               

               
Conread position:
               
397-767
               

               
Cow position:
               
chr9:58447922-58448295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
401-715
               

               
Cow position:
               
chr9:9654112-9654423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
402-767
               

               
Cow position:
               
chr9:4340970-4341325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 128
               

               
Conread position:
               
403-767
               

               
Cow position:
               
chr9:12910200-12910569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 130
               

               
Conread position:
               
409-768
               

               
Cow position:
               
chr9:41728448-41728090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 43
               

               
Conread position:
               
411-681
               

               
Cow position:
               
chr9:49417178-49416907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 128
               

               
Conread position:
               
411-762
               

               
Cow position:
               
chr9:30124111-30123766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
411-767
               

               
Cow position:
               
chr9:19555565-19555220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
411-770
               

               
Cow position:
               
chr9:1371123-1370763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
413-679
               

               
Cow position:
               
chr9:60027386-60027119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
415-764
               

               
Cow position:
               
chr9:56065735-56065400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
416-676
               

               
Cow position:
               
chr9:44921206-44921474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
42, 174
               

               
Conread position:
               
421-654
               

               
Cow position:
               
chr9:43875542-43875773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
421-763
               

               
Cow position:
               
chr9:8901044-8901394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
421-767
               

               
Cow position:
               
chr9:11168910-11168576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
41, 116
               

               
Conread position:
               
426-702
               

               
Cow position:
               
chr9:50543249-50543526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
426-767
               

               
Cow position:
               
chr9:40215418-40215078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
427-768
               

               
Cow position:
               
chr9:60394877-60395219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
429-767
               

               
Cow position:
               
chr9:25557137-25556814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 39
               

               
Conread position:
               
430-765
               

               
Cow position:
               
chr9:26477387-26477045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
430-767
               

               
Cow position:
               
chr9:6851897-6852220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 160
               

               
Conread position:
               
430-767
               

               
Cow position:
               
chr9:39011306-39011636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
432-764
               

               
Cow position:
               
chr9:51720733-51721053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
432-767
               

               
Cow position:
               
chr9:5263669-5263335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 158
               

               
Conread position:
               
432-767
               

               
Cow position:
               
chr9:5456005-5456341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 110
               

               
Conread position:
               
432-767
               

               
Cow position:
               
chr9:28451989-28452338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
24, 97
               

               
Conread position:
               
434-759
               

               
Cow position:
               
chr9:1755975-1756312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
436-678
               

               
Cow position:
               
chr9:49292981-49293220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
437-767
               

               
Cow position:
               
chr9:52267592-52267931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
444-767
               

               
Cow position:
               
chr9:33114502-33114170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
445-703
               

               
Cow position:
               
chr9:5077565-5077807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
451-764
               

               
Cow position:
               
chr9:7953049-7952736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
453-718
               

               
Cow position:
               
chr9:6596089-6596345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
190, 73
               

               
Conread position:
               
454-694
               

               
Cow position:
               
chr9:52839741-52839972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
455-765
               

               
Cow position:
               
chr9:48730571-48730261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
135, 36
               

               
Conread position:
               
457-767
               

               
Cow position:
               
chr9:34410254-34410562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
106, 71
               

               
Conread position:
               
460-767
               

               
Cow position:
               
chr9:6189233-6189532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 66
               

               
Conread position:
               
462-667
               

               
Cow position:
               
chr9:41486104-41486308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
80, 64
               

               
Conread position:
               
462-702
               

               
Cow position:
               
chr9:11969324-11969086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
181, 69
               

               
Conread position:
               
462-702
               

               
Cow position:
               
chr9:35105654-35105891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
177, 15
               

               
Conread position:
               
462-749
               

               
Cow position:
               
chr9:34284084-34283802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
99, 51
               

               
Conread position:
               
462-765
               

               
Cow position:
               
chr9:3573606-3573297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 126
               

               
Conread position:
               
462-767
               

               
Cow position:
               
chr9:4262956-4263258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 119
               

               
Conread position:
               
462-767
               

               
Cow position:
               
chr9:32669811-32670115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
177, 65
               

               
Conread position:
               
462-767
               

               
Cow position:
               
chr9:40005612-40005308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
178, 73
               

               
Conread position:
               
463-767
               

               
Cow position:
               
chr9:13743797-13744103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
176, 53
               

               
Conread position:
               
469-687
               

               
Cow position:
               
chr9:10819703-10819914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
187, 70
               

               
Conread position:
               
477-756
               

               
Cow position:
               
chr9:21080684-21080415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
161, 63
               

               
Conread position:
               
478-767
               

               
Cow position:
               
chr9:53109373-53109082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 61
               

               
Conread position:
               
481-767
               

               
Cow position:
               
chr9:33584565-33584853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 45
               

               
Conread position:
               
482-762
               

               
Cow position:
               
chr9:54493254-54492974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
482-764
               

               
Cow position:
               
chr9:38941315-38941603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
160, 57
               

               
Conread position:
               
482-767
               

               
Cow position:
               
chr9:41785337-41785052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
68, 113
               

               
Conread position:
               
485-767
               

               
Cow position:
               
chr9:23955870-23956146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 41
               

               
Conread position:
               
486-718
               

               
Cow position:
               
chr9:45171106-45171343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
488-757
               

               
Cow position:
               
chr9:21387533-21387271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 76
               

               
Conread position:
               
489-692
               

               
Cow position:
               
chr9:28754929-28754728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
154, 99
               

               
Conread position:
               
490-699
               

               
Cow position:
               
chr9:32981963-32982173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
100, 53
               

               
Conread position:
               
498-767
               

               
Cow position:
               
chr9:9460076-9459820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
505-767
               

               
Cow position:
               
chr9:8628822-8629081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
138, 83
               

               
Conread position:
               
511-767
               

               
Cow position:
               
chr9:34024789-34024530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
512-767
               

               
Cow position:
               
chr9:9686327-9686587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
128, 16
               

               
Conread position:
               
514-767
               

               
Cow position:
               
chr9:50382240-50382487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
16, 75
               

               
Conread position:
               
515-764
               

               
Cow position:
               
chr9:61351255-61351511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
536-702
               

               
Cow position:
               
chr9:39758583-39758417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
104, 52
               

               
Conread position:
               
536-747
               

               
Cow position:
               
chr9:59835022-59834823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
107, 54
               

               
Conread position:
               
536-752
               

               
Cow position:
               
chr9:58368933-58369147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
107, 6
               

               
Conread position:
               
539-767
               

               
Cow position:
               
chr9:5104341-5104579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
104, 49
               

               
Conread position:
               
540-767
               

               
Cow position:
               
chr9:36628179-36627953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
103, 48
               

               
Conread position:
               
540-767
               

               
Cow position:
               
chr9:52518762-52518990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
50, 114
               

               
Conread position:
               
541-767
               

               
Cow position:
               
chr9:4241466-4241238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
100, 46
               

               
Conread position:
               
541-767
               

               
Cow position:
               
chr9:33347430-33347651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
542-764
               

               
Cow position:
               
chr9:43159811-43159589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
542-765
               

               
Cow position:
               
chr9:23970837-23971060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
543-736
               

               
Cow position:
               
chr9:22466830-22466639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
99, 44
               

               
Conread position:
               
543-767
               

               
Cow position:
               
chr9:48017039-48016820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 47
               

               
Conread position:
               
543-767
               

               
Cow position:
               
chr9:63361661-63361880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
98, 45
               

               
Conread position:
               
544-703
               

               
Cow position:
               
chr9:19758776-19758619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
97, 28
               

               
Conread position:
               
544-767
               

               
Cow position:
               
chr9:33151799-33151580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
98, 44
               

               
Conread position:
               
546-767
               

               
Cow position:
               
chr9:14738304-14738083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
94, 44
               

               
Conread position:
               
546-767
               

               
Cow position:
               
chr9:37199182-37198958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
94, 43
               

               
Conread position:
               
547-763
               

               
Cow position:
               
chr9:49402704-49402483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 9
               

               
Conread position:
               
547-764
               

               
Cow position:
               
chr9:7805907-7806120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
549-749
               

               
Cow position:
               
chr9:20637424-20637224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
551-764
               

               
Cow position:
               
chr9:11098406-11098617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
94, 37
               

               
Conread position:
               
553-764
               

               
Cow position:
               
chr9:58131906-58132114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 7
               

               
Conread position:
               
557-700
               

               
Cow position:
               
chr9:55354655-55354514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
83, 31
               

               
Conread position:
               
557-767
               

               
Cow position:
               
chr9:59699503-59699721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
560-756
               

               
Cow position:
               
chr9:22165672-22165875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
560-765
               

               
Cow position:
               
chr9:39149120-39148915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
563-767
               

               
Cow position:
               
chr9:42586518-42586717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
564-767
               

               
Cow position:
               
chr9:5342211-5342415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
568-734
               

               
Cow position:
               
chr9:43202367-43202199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
572-763
               

               
Cow position:
               
chr9:34707283-34707475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
575-752
               

               
Cow position:
               
chr9:44944452-44944627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
575-767
               

               
Cow position:
               
chr9:12773716-12773525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
576-765
               

               
Cow position:
               
chr9:26394325-26394515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
576-767
               

               
Cow position:
               
chr9:19718315-19718503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
577-767
               

               
Cow position:
               
chr9:2397831-2397641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
580-767
               

               
Cow position:
               
chr9:32878075-32877889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
580-767
               

               
Cow position:
               
chr9:35403604-35403410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 8
               

               
Conread position:
               
583-764
               

               
Cow position:
               
chr9:24079320-24079139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 5
               

               
Conread position:
               
583-769
               

               
Cow position:
               
chr9:55807649-55807463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 5
               

               
Conread position:
               
588-767
               

               
Cow position:
               
chr9:40984519-40984335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
596-767
               

               
Cow position:
               
chr9:32052282-32052107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 60
               

               
Conread position:
               
597-756
               

               
Cow position:
               
chr9:1712701-1712866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
598-739
               

               
Cow position:
               
chr9:5172529-5172675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 54
               

               
Conread position:
               
598-767
               

               
Cow position:
               
chr9:6237488-6237659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
599-756
               

               
Cow position:
               
chr9:52998377-52998536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
599-766
               

               
Cow position:
               
chr9:34423625-34423450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
599-767
               

               
Cow position:
               
chr9:7543256-7543426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
599-767
               

               
Cow position:
               
chr9:12786470-12786645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
599-767
               

               
Cow position:
               
chr9:33101112-33101274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 64
               

               
Conread position:
               
601-764
               

               
Cow position:
               
chr9:11873303-11873461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
601-764
               

               
Cow position:
               
chr9:61300976-61301143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
601-765
               

               
Cow position:
               
chr9:41644749-41644920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
601-767
               

               
Cow position:
               
chr9:11380645-11380814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
601-767
               

               
Cow position:
               
chr9:19771363-19771191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 55
               

               
Conread position:
               
602-762
               

               
Cow position:
               
chr9:32773213-32773058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
602-765
               

               
Cow position:
               
chr9:16115608-16115772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
602-767
               

               
Cow position:
               
chr9:8834127-8834300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
602-767
               

               
Cow position:
               
chr9:12337902-12337731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 58
               

               
Conread position:
               
602-767
               

               
Cow position:
               
chr9:22447294-22447463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
602-767
               

               
Cow position:
               
chr9:28315429-28315255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
602-767
               

               
Cow position:
               
chr9:34917185-34917346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 58
               

               
Conread position:
               
602-767
               

               
Cow position:
               
chr9:57642507-57642344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
603-767
               

               
Cow position:
               
chr9:11447809-11447976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 53
               

               
Conread position:
               
603-767
               

               
Cow position:
               
chr9:14519382-14519544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 6
               

               
Conread position:
               
603-767
               

               
Cow position:
               
chr9:36457998-36457827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
40, 57
               

               
Conread position:
               
604-766
               

               
Cow position:
               
chr9:2037439-2037268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 56
               

               
Conread position:
               
604-767
               

               
Cow position:
               
chr9:388196-388359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
604-767
               

               
Cow position:
               
chr9:44758933-44759096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
605-782
               

               
Cow position:
               
chr9:44918283-44918462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
606-766
               

               
Cow position:
               
chr9:64140563-64140732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
609-763
               

               
Cow position:
               
chr9:53323791-53323952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
609-766
               

               
Cow position:
               
chr9:34666437-34666284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 47
               

               
Conread position:
               
609-767
               

               
Cow position:
               
chr9:59897586-59897427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
619-767
               

               
Cow position:
               
chr9:30194994-30194842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
620-767
               

               
Cow position:
               
chr9:1917961-1917813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
624-767
               

               
Cow position:
               
chr9:33247992-33248131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
17, 39
               

               
Conread position:
               
628-767
               

               
Cow position:
               
chr9:53120967-53120835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
639-766
               

               
Cow position:
               
chr9:34399632-34399502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
643-767
               

               
Cow position:
               
chr9:21816488-21816362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 11
               
Show alignments to all cow chromosomes.