Cow genome map
| Conread name: | Spl1-SPL01G050094 |
| Conread position: | 1-245 |
| Cow position: | chr1:6195271-6195521 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 1-246 |
| Cow position: | chr1:21998920-21998692 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 226, 134 |
| Conread position: | 1-275 |
| Cow position: | chr1:74285753-74285477 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 0 |
| Conread position: | 1-301 |
| Cow position: | chr1:69921398-69921099 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 0 |
| Conread position: | 1-687 |
| Cow position: | chr1:33551963-33552667 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 297 |
| Conread position: | 1-687 |
| Cow position: | chr1:68606505-68605809 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 95 |
| Conread position: | 1-689 |
| Cow position: | chr1:93855553-93856252 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 99 |
| Conread position: | 1-692 |
| Cow position: | chr1:8826084-8826797 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 40 |
| Conread position: | 1-692 |
| Cow position: | chr1:12061177-12060465 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 135 |
| Conread position: | 1-692 |
| Cow position: | chr1:28874117-28874810 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 156 |
| Conread position: | 1-692 |
| Cow position: | chr1:56143300-56142601 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 51 |
| Conread position: | 1-692 |
| Cow position: | chr1:65387356-65388055 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 561, 297 |
| Conread position: | 1-693 |
| Cow position: | chr1:49973151-49972429 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 485 |
| Conread position: | 1-694 |
| Cow position: | chr1:42737494-42738174 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 561, 115 |
| Conread position: | 1-696 |
| Cow position: | chr1:17011697-17010991 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 59 |
| Conread position: | 1-696 |
| Cow position: | chr1:20829938-20830642 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 116 |
| Conread position: | 1-696 |
| Cow position: | chr1:22619602-22618926 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 123 |
| Conread position: | 1-696 |
| Cow position: | chr1:24652312-24653011 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 242 |
| Conread position: | 1-696 |
| Cow position: | chr1:55275997-55275284 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 113 |
| Conread position: | 1-696 |
| Cow position: | chr1:57423800-57423085 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-708 |
| Cow position: | chr1:82653700-82654416 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 189 |
| Conread position: | 7-692 |
| Cow position: | chr1:31365056-31364360 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 291 |
| Conread position: | 11-696 |
| Cow position: | chr1:91900070-91900769 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 413 |
| Conread position: | 14-696 |
| Cow position: | chr1:40056152-40056851 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 15-557 |
| Cow position: | chr1:21355395-21354861 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 245 |
| Conread position: | 20-694 |
| Cow position: | chr1:76750906-76750227 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 14 |
| Conread position: | 21-694 |
| Cow position: | chr1:17940715-17940026 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 13 |
| Conread position: | 28-696 |
| Cow position: | chr1:21088494-21089178 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 312 |
| Conread position: | 28-696 |
| Cow position: | chr1:67834064-67833389 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 99 |
| Conread position: | 28-696 |
| Cow position: | chr1:80358107-80357423 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 127 |
| Conread position: | 29-696 |
| Cow position: | chr1:33897323-33898007 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 54-696 |
| Cow position: | chr1:56724245-56724891 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 85 |
| Conread position: | 132-694 |
| Cow position: | chr1:38417305-38417868 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 14 |
| Conread position: | 157-696 |
| Cow position: | chr1:82477166-82477723 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 172-696 |
| Cow position: | chr1:18241011-18240486 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 137 |
| Conread position: | 186-696 |
| Cow position: | chr1:77922926-77923455 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 239-696 |
| Cow position: | chr1:26584372-26584846 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 394 |
| Conread position: | 265-696 |
| Cow position: | chr1:9379217-9378771 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 103 |
| Conread position: | 269-696 |
| Cow position: | chr1:71561443-71560998 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 280-687 |
| Cow position: | chr1:50248388-50247972 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 238 |
| Conread position: | 280-696 |
| Cow position: | chr1:10723895-10724326 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 291-696 |
| Cow position: | chr1:50210515-50210095 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 310-693 |
| Cow position: | chr1:82565459-82565857 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 324-696 |
| Cow position: | chr1:29035663-29036043 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 98 |
| Conread position: | 325-696 |
| Cow position: | chr1:21116480-21116089 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 279 |
| Conread position: | 345-694 |
| Cow position: | chr1:25053672-25054038 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 365-696 |
| Cow position: | chr1:86508508-86508148 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 410-689 |
| Cow position: | chr1:76741784-76741495 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 427-696 |
| Cow position: | chr1:30520254-30520536 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 138, 112 |
| Conread position: | 439-696 |
| Cow position: | chr1:18964894-18964622 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 509-697 |
| Cow position: | chr1:40966870-40966669 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 529-696 |
| Cow position: | chr1:62921126-62921306 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 562-696 |
| Cow position: | chr1:101012582-101012437 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.