Cow genome map
| Conread name: | Spl1-SPL01G050094 |
| Conread position: | 1-196 |
| Cow position: | chr6:39438720-39438915 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-275 |
| Cow position: | chr6:6567545-6567810 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-370 |
| Cow position: | chr6:24240008-24240389 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 144 |
| Conread position: | 1-379 |
| Cow position: | chr6:28275963-28276341 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 304 |
| Conread position: | 1-413 |
| Cow position: | chr6:15278856-15278449 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-563 |
| Cow position: | chr6:51086898-51087458 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 96 |
| Conread position: | 1-687 |
| Cow position: | chr6:47042246-47041554 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 115 |
| Conread position: | 1-692 |
| Cow position: | chr6:34891169-34890466 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 516 |
| Conread position: | 1-692 |
| Cow position: | chr6:39333914-39333211 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 307 |
| Conread position: | 1-693 |
| Cow position: | chr6:28169859-28170570 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 111 |
| Conread position: | 1-694 |
| Cow position: | chr6:1821670-1820966 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 294 |
| Conread position: | 1-694 |
| Cow position: | chr6:8760335-8759635 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 34 |
| Conread position: | 1-694 |
| Cow position: | chr6:10644695-10645381 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 84 |
| Conread position: | 1-694 |
| Cow position: | chr6:27529046-27528357 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 1-694 |
| Cow position: | chr6:52693971-52694688 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 1-696 |
| Cow position: | chr6:2375653-2376339 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 611, 102 |
| Conread position: | 1-696 |
| Cow position: | chr6:10250644-10249943 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 120 |
| Conread position: | 1-696 |
| Cow position: | chr6:13310405-13309714 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 316 |
| Conread position: | 1-696 |
| Cow position: | chr6:17597355-17596631 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 133 |
| Conread position: | 1-696 |
| Cow position: | chr6:26669907-26669198 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 40 |
| Conread position: | 1-696 |
| Cow position: | chr6:28490609-28489905 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 148 |
| Conread position: | 1-696 |
| Cow position: | chr6:39910289-39910996 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 477 |
| Conread position: | 1-696 |
| Cow position: | chr6:40276042-40276747 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 118 |
| Conread position: | 1-696 |
| Cow position: | chr6:45586916-45587612 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 115 |
| Conread position: | 1-696 |
| Cow position: | chr6:65821018-65820306 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 500 |
| Conread position: | 1-705 |
| Cow position: | chr6:1535622-1534907 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 2-388 |
| Cow position: | chr6:36527256-36527651 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 358 |
| Conread position: | 2-694 |
| Cow position: | chr6:40866368-40865664 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 301 |
| Conread position: | 15-696 |
| Cow position: | chr6:7140362-7139676 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 25-693 |
| Cow position: | chr6:21973649-21974331 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 336 |
| Conread position: | 27-295 |
| Cow position: | chr6:4258770-4258515 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 31-694 |
| Cow position: | chr6:44262495-44261817 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 371 |
| Conread position: | 92-696 |
| Cow position: | chr6:59617163-59617755 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 9 |
| Conread position: | 135-694 |
| Cow position: | chr6:43792483-43791906 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 220-696 |
| Cow position: | chr6:28703540-28703045 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 230-694 |
| Cow position: | chr6:11723991-11723536 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 68 |
| Conread position: | 262-696 |
| Cow position: | chr6:3571806-3572259 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 324-696 |
| Cow position: | chr6:38272849-38273233 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 332-696 |
| Cow position: | chr6:5749211-5749589 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 14 |
| Conread position: | 349-696 |
| Cow position: | chr6:58461016-58460657 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 169 |
| Conread position: | 360-694 |
| Cow position: | chr6:184228-183880 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 394-694 |
| Cow position: | chr6:58028077-58028389 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 170, 79 |
| Conread position: | 421-697 |
| Cow position: | chr6:39374689-39374964 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 435-694 |
| Cow position: | chr6:65907399-65907125 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 171 |
| Conread position: | 445-687 |
| Cow position: | chr6:64717719-64717975 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 458-696 |
| Cow position: | chr6:18973046-18972799 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 109, 46 |
| Conread position: | 462-696 |
| Cow position: | chr6:57471085-57471332 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 490-693 |
| Cow position: | chr6:26777722-26777508 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 508-694 |
| Cow position: | chr6:27473893-27474092 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 524-696 |
| Cow position: | chr6:14390408-14390593 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 561-687 |
| Cow position: | chr6:3275625-3275488 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 561-694 |
| Cow position: | chr6:17047859-17048003 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.