Cow genome map
Conread name: | Spl1-SPL01G050094 |
Conread position: | 1-170 |
Cow position: | chrX:4797115-4797284 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 137 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-563 |
Cow position: | chrX:30057843-30058403 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 63 |
Conread position: | 1-692 |
Cow position: | chrX:3375115-3374412 (view UCSC Genome Browser custom track) |
Alignm length: | 708 |
Alignm identity: | 536 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 338, 30 |
Conread position: | 1-693 |
Cow position: | chrX:5282978-5282286 (view UCSC Genome Browser custom track) |
Alignm length: | 708 |
Alignm identity: | 520 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 300, 94 |
Conread position: | 1-694 |
Cow position: | chrX:321256-321964 (view UCSC Genome Browser custom track) |
Alignm length: | 720 |
Alignm identity: | 533 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 343, 251 |
Conread position: | 1-694 |
Cow position: | chrX:18952890-18952178 (view UCSC Genome Browser custom track) |
Alignm length: | 718 |
Alignm identity: | 553 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 198, 40 |
Conread position: | 1-694 |
Cow position: | chrX:23277817-23278522 (view UCSC Genome Browser custom track) |
Alignm length: | 714 |
Alignm identity: | 562 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 159 |
Conread position: | 1-694 |
Cow position: | chrX:23455226-23454520 (view UCSC Genome Browser custom track) |
Alignm length: | 710 |
Alignm identity: | 567 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 79 |
Conread position: | 1-694 |
Cow position: | chrX:26528766-26529463 (view UCSC Genome Browser custom track) |
Alignm length: | 708 |
Alignm identity: | 562 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 365, 122 |
Conread position: | 1-696 |
Cow position: | chrX:674414-673706 (view UCSC Genome Browser custom track) |
Alignm length: | 717 |
Alignm identity: | 550 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 103 |
Conread position: | 1-696 |
Cow position: | chrX:6281968-6281282 (view UCSC Genome Browser custom track) |
Alignm length: | 718 |
Alignm identity: | 536 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 265 |
Conread position: | 1-696 |
Cow position: | chrX:11148544-11147832 (view UCSC Genome Browser custom track) |
Alignm length: | 716 |
Alignm identity: | 546 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 60 |
Conread position: | 1-696 |
Cow position: | chrX:11422661-11423372 (view UCSC Genome Browser custom track) |
Alignm length: | 714 |
Alignm identity: | 537 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 300, 261 |
Conread position: | 1-696 |
Cow position: | chrX:13075906-13075202 (view UCSC Genome Browser custom track) |
Alignm length: | 712 |
Alignm identity: | 535 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 300, 279 |
Conread position: | 1-696 |
Cow position: | chrX:13096481-13095763 (view UCSC Genome Browser custom track) |
Alignm length: | 724 |
Alignm identity: | 539 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 291 |
Conread position: | 1-696 |
Cow position: | chrX:14595637-14596348 (view UCSC Genome Browser custom track) |
Alignm length: | 717 |
Alignm identity: | 549 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 104 |
Conread position: | 1-696 |
Cow position: | chrX:16276437-16277150 (view UCSC Genome Browser custom track) |
Alignm length: | 715 |
Alignm identity: | 542 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 446 |
Conread position: | 1-696 |
Cow position: | chrX:16362333-16361619 (view UCSC Genome Browser custom track) |
Alignm length: | 718 |
Alignm identity: | 536 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 62 |
Conread position: | 1-696 |
Cow position: | chrX:16811652-16810946 (view UCSC Genome Browser custom track) |
Alignm length: | 712 |
Alignm identity: | 531 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 292, 106 |
Conread position: | 1-696 |
Cow position: | chrX:21490954-21491661 (view UCSC Genome Browser custom track) |
Alignm length: | 726 |
Alignm identity: | 545 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 109 |
Conread position: | 1-696 |
Cow position: | chrX:28585770-28586482 (view UCSC Genome Browser custom track) |
Alignm length: | 714 |
Alignm identity: | 531 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 300, 403 |
Conread position: | 1-696 |
Cow position: | chrX:29793243-29792533 (view UCSC Genome Browser custom track) |
Alignm length: | 721 |
Alignm identity: | 543 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 144 |
Conread position: | 1-696 |
Cow position: | chrX:30011789-30012500 (view UCSC Genome Browser custom track) |
Alignm length: | 714 |
Alignm identity: | 530 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 300, 371 |
Conread position: | 1-696 |
Cow position: | chrX:30201941-30201236 (view UCSC Genome Browser custom track) |
Alignm length: | 711 |
Alignm identity: | 533 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 473, 295 |
Conread position: | 1-696 |
Cow position: | chrX:41850408-41849723 (view UCSC Genome Browser custom track) |
Alignm length: | 708 |
Alignm identity: | 543 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 40 |
Conread position: | 1-697 |
Cow position: | chrX:36136771-36136072 (view UCSC Genome Browser custom track) |
Alignm length: | 713 |
Alignm identity: | 564 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 189 |
Conread position: | 2-373 |
Cow position: | chrX:29852773-29852399 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 79 |
Conread position: | 2-693 |
Cow position: | chrX:28650761-28650071 (view UCSC Genome Browser custom track) |
Alignm length: | 710 |
Alignm identity: | 527 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 240, 121 |
Conread position: | 2-694 |
Cow position: | chrX:5296757-5296059 (view UCSC Genome Browser custom track) |
Alignm length: | 711 |
Alignm identity: | 541 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 150 |
Conread position: | 2-696 |
Cow position: | chrX:2858583-2857876 (view UCSC Genome Browser custom track) |
Alignm length: | 714 |
Alignm identity: | 542 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 299, 78 |
Conread position: | 2-696 |
Cow position: | chrX:16780096-16780783 (view UCSC Genome Browser custom track) |
Alignm length: | 722 |
Alignm identity: | 529 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 110 |
Conread position: | 9-694 |
Cow position: | chrX:27593191-27592491 (view UCSC Genome Browser custom track) |
Alignm length: | 707 |
Alignm identity: | 559 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 162 |
Conread position: | 20-693 |
Cow position: | chrX:29949789-29949113 (view UCSC Genome Browser custom track) |
Alignm length: | 697 |
Alignm identity: | 529 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 37 |
Conread position: | 23-696 |
Cow position: | chrX:37014935-37015617 (view UCSC Genome Browser custom track) |
Alignm length: | 692 |
Alignm identity: | 526 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 278, 226 |
Conread position: | 29-314 |
Cow position: | chrX:16041377-16041082 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 212 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 76, 102 |
Conread position: | 29-687 |
Cow position: | chrX:971601-972266 (view UCSC Genome Browser custom track) |
Alignm length: | 680 |
Alignm identity: | 540 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 444, 131 |
Conread position: | 47-696 |
Cow position: | chrX:30069009-30068341 (view UCSC Genome Browser custom track) |
Alignm length: | 683 |
Alignm identity: | 507 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 250, 77 |
Conread position: | 73-692 |
Cow position: | chrX:15600024-15600642 (view UCSC Genome Browser custom track) |
Alignm length: | 636 |
Alignm identity: | 486 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 396, 9 |
Conread position: | 88-696 |
Cow position: | chrX:21341269-21341904 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 479 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 290 |
Conread position: | 90-696 |
Cow position: | chrX:2815602-2814982 (view UCSC Genome Browser custom track) |
Alignm length: | 626 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 211, 184 |
Conread position: | 119-696 |
Cow position: | chrX:26399219-26398625 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 449 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 41 |
Conread position: | 124-696 |
Cow position: | chrX:28521682-28521104 (view UCSC Genome Browser custom track) |
Alignm length: | 586 |
Alignm identity: | 444 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 441, 242 |
Conread position: | 134-696 |
Cow position: | chrX:18451902-18452482 (view UCSC Genome Browser custom track) |
Alignm length: | 581 |
Alignm identity: | 458 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 167, 0 |
Conread position: | 143-696 |
Cow position: | chrX:20035470-20034900 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 158, 490 |
Conread position: | 164-693 |
Cow position: | chrX:2535116-2534585 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 422 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 298, 350 |
Conread position: | 170-696 |
Cow position: | chrX:24771904-24771361 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 435 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 299 |
Conread position: | 204-696 |
Cow position: | chrX:13447834-13447325 (view UCSC Genome Browser custom track) |
Alignm length: | 511 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 220 |
Conread position: | 291-696 |
Cow position: | chrX:12667182-12667617 (view UCSC Genome Browser custom track) |
Alignm length: | 437 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 146 |
Conread position: | 293-694 |
Cow position: | chrX:27495795-27496209 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 224 |
Conread position: | 307-692 |
Cow position: | chrX:16700797-16701188 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 50 |
Conread position: | 337-696 |
Cow position: | chrX:37957924-37957554 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 17 |
Conread position: | 355-696 |
Cow position: | chrX:37850276-37850632 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 0 |
Conread position: | 357-708 |
Cow position: | chrX:32327315-32327675 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 31 |
Conread position: | 378-696 |
Cow position: | chrX:11463879-11463546 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 0 |
Conread position: | 383-692 |
Cow position: | chrX:21224647-21224969 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 82 |
Conread position: | 402-696 |
Cow position: | chrX:6241239-6240933 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 22 |
Conread position: | 404-696 |
Cow position: | chrX:30436038-30436345 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 0 |
Conread position: | 413-696 |
Cow position: | chrX:45419035-45418747 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 11 |
Conread position: | 421-696 |
Cow position: | chrX:28664608-28664896 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 28 |
Conread position: | 424-696 |
Cow position: | chrX:2977878-2977591 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 445-696 |
Cow position: | chrX:29096091-29095825 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 464-696 |
Cow position: | chrX:42477559-42477314 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 192 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 0 |
Conread position: | 467-696 |
Cow position: | chrX:21791875-21792115 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 168 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 98, 27 |
Conread position: | 516-696 |
Cow position: | chrX:1942058-1941865 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 153 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 541-694 |
Cow position: | chrX:11459506-11459340 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 125 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 24, 0 |
Show alignments to all cow chromosomes.