Cow genome map

Conread name: Spl1-SPL01H060052

Conread position: 1-147
Cow position: chr27:15544202-15544351 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 68, 0

Conread position: 1-158
Cow position: chr27:25885012-25885174 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 68, 136

Conread position: 1-164
Cow position: chr27:9990016-9989848 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 68, 0

Conread position: 1-206
Cow position: chr27:13308831-13309039 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 68, 171

Conread position: 1-228
Cow position: chr27:25971414-25971183 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 68, 136

Conread position: 1-238
Cow position: chr27:8429190-8429438 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 68, 205

Conread position: 1-259
Cow position: chr27:23317755-23317504 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 214, 78

Conread position: 1-263
Cow position: chr27:1081975-1081711 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 68, 170

Conread position: 1-264
Cow position: chr27:25801018-25800758 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 68, 47

Conread position: 1-266
Cow position: chr27:3232347-3232079 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 81, 186

Conread position: 1-266
Cow position: chr27:8592568-8592841 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 182
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 71, 210

Conread position: 1-266
Cow position: chr27:18954230-18954498 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 179
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 68, 188

Conread position: 1-266
Cow position: chr27:19424190-19423922 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 89, 186

Conread position: 1-266
Cow position: chr27:26330119-26330387 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 68, 171

Conread position: 1-272
Cow position: chr27:2557804-2557532 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 117

Conread position: 1-272
Cow position: chr27:9332865-9333128 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 149, 12

Conread position: 1-272
Cow position: chr27:13316750-13317016 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 69, 39

Conread position: 1-272
Cow position: chr27:22647445-22647171 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 68, 171

Conread position: 1-292
Cow position: chr27:15872132-15871855 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 69, 27

Conread position: 1-293
Cow position: chr27:15405815-15406100 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 76, 29

Conread position: 1-294
Cow position: chr27:4982559-4982855 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 171

Conread position: 1-295
Cow position: chr27:5914120-5914413 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 67, 140

Conread position: 1-297
Cow position: chr27:1188853-1189144 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 34, 116

Conread position: 1-297
Cow position: chr27:27291576-27291875 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 81, 175

Conread position: 1-300
Cow position: chr27:2331690-2331988 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 81, 171

Conread position: 1-301
Cow position: chr27:13901311-13901615 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 81, 171

Conread position: 1-302
Cow position: chr27:19932379-19932065 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 220
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 68, 155

Conread position: 1-302
Cow position: chr27:26785009-26785308 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 214
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 69, 36

Conread position: 1-304
Cow position: chr27:2681710-2682015 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 226
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 20, 40

Conread position: 1-304
Cow position: chr27:4331553-4331250 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 68, 175

Conread position: 1-307
Cow position: chr27:3653513-3653208 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 81, 171

Conread position: 1-307
Cow position: chr27:8201125-8201427 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 69, 47

Conread position: 1-307
Cow position: chr27:13353493-13353799 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 68, 172

Conread position: 1-307
Cow position: chr27:15033704-15033399 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 220
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 74, 171

Conread position: 1-307
Cow position: chr27:15634155-15633851 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 68, 137

Conread position: 1-307
Cow position: chr27:15870823-15870525 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 115, 77

Conread position: 1-307
Cow position: chr27:20810608-20810908 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 149, 64

Conread position: 1-307
Cow position: chr27:22797470-22797166 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 210
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 64, 169

Conread position: 1-307
Cow position: chr27:24296082-24295768 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 221
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 81, 180

Conread position: 1-308
Cow position: chr27:165732-165427 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 81, 171

Conread position: 1-308
Cow position: chr27:1536357-1536663 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 47

Conread position: 1-308
Cow position: chr27:5983843-5983537 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 210
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 81, 171

Conread position: 1-308
Cow position: chr27:9970358-9970664 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 68, 171

Conread position: 1-308
Cow position: chr27:12006335-12006641 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 215
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 68, 171

Conread position: 1-308
Cow position: chr27:15867108-15866809 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 62, 109

Conread position: 1-308
Cow position: chr27:16031210-16030904 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 68, 171

Conread position: 1-308
Cow position: chr27:29036193-29035889 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 69, 166

Conread position: 1-309
Cow position: chr27:11481118-11481424 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 171

Conread position: 1-311
Cow position: chr27:27930395-27930695 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 68, 112

Conread position: 1-315
Cow position: chr27:14380491-14380808 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 171

Conread position: 1-316
Cow position: chr27:1520867-1521175 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 214
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 68, 135

Conread position: 1-316
Cow position: chr27:2001032-2001346 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 218
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 89, 171

Conread position: 1-316
Cow position: chr27:21392199-21392514 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 217
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 76, 34

Conread position: 1-316
Cow position: chr27:30307082-30306765 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 81, 171

Conread position: 2-266
Cow position: chr27:19523520-19523254 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 63, 184

Conread position: 2-272
Cow position: chr27:14297395-14297668 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 80, 170

Conread position: 3-291
Cow position: chr27:1140887-1141180 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 75, 126

Conread position: 6-264
Cow position: chr27:13183080-13182832 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 149, 34

Conread position: 6-300
Cow position: chr27:3990608-3990315 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 76, 166

Conread position: 6-308
Cow position: chr27:10579139-10579436 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 76, 166

Conread position: 7-161
Cow position: chr27:27469339-27469183 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 7-311
Cow position: chr27:30036062-30036369 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 213

Conread position: 8-264
Cow position: chr27:11434369-11434620 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 28

Conread position: 8-272
Cow position: chr27:9263084-9262816 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 74, 180

Conread position: 8-272
Cow position: chr27:21350042-21350308 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 58, 163

Conread position: 8-298
Cow position: chr27:29467124-29467412 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 196
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 61, 130

Conread position: 8-307
Cow position: chr27:8959822-8959524 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 204
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 61, 164

Conread position: 8-309
Cow position: chr27:27729293-27728993 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 198
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 61, 122

Conread position: 15-272
Cow position: chr27:344729-344469 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 54, 158

Conread position: 17-309
Cow position: chr27:25112365-25112657 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 52, 163

Conread position: 18-261
Cow position: chr27:10306322-10306567 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 52, 164

Conread position: 34-272
Cow position: chr27:30677859-30677625 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 45, 145

Conread position: 50-272
Cow position: chr27:27193111-27192884 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 154
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 79

Conread position: 52-261
Cow position: chr27:24205896-24205684 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 59

Conread position: 52-307
Cow position: chr27:11256445-11256192 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 175
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 96, 127

Conread position: 55-272
Cow position: chr27:11489862-11490083 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 22, 123

Conread position: 56-272
Cow position: chr27:30583660-30583437 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 11, 82

Conread position: 70-255
Cow position: chr27:1124373-1124183 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 70-306
Cow position: chr27:27054237-27053999 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 80, 99

Conread position: 73-272
Cow position: chr27:18559673-18559473 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 31, 114

Conread position: 83-272
Cow position: chr27:491355-491544 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 66, 90

Conread position: 89-304
Cow position: chr27:28984046-28984255 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 13, 81

Conread position: 98-307
Cow position: chr27:816475-816270 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 46, 15

Conread position: 104-272
Cow position: chr27:21283958-21283789 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 84

Conread position: 109-297
Cow position: chr27:2936124-2936304 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 76

Conread position: 550-661
Cow position: chr27:1903379-1903268 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.