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Cow genome map

           
Conread name:
           
Spl1-SPL01H060052
        

               
Conread position:
               
1-143
               

               
Cow position:
               
chr9:37181953-37182098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr9:43225610-43225464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr9:44920326-44920481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr9:23526847-23527005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr9:15802490-15802655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr9:17588229-17588393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
67, 115
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr9:50003814-50003981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr9:9021514-9021338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr9:14003128-14003296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 115
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr9:34460512-34460324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr9:9872030-9872238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr9:43856447-43856240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 160
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr9:3960092-3959861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr9:12260274-12260022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 170
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr9:22442582-22442823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 77
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr9:5058991-5058732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
85, 183
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr9:9199187-9199441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
148, 69
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr9:382798-382539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 105
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr9:47045038-47045302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 171
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr9:15052798-15052534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
68, 172
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr9:51692529-51692261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 5
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr9:1850552-1850295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr9:6365468-6365733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
69, 101
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:2495650-2495376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
69, 186
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:3756739-3756474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
61, 91
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:5627910-5628184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
69, 171
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:6329316-6329044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
68, 115
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:7005832-7006105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:9016165-9016439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:9210234-9210508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:12161686-12161961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:12285616-12285343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:18109793-18110064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
77, 114
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:18506733-18506459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:32972458-32972731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
81, 170
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:59196947-59197214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
68, 136
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr9:59539003-59539267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr9:30401373-30401648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 181
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr9:5840057-5839753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
76, 198
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr9:33845109-33845402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
63, 181
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr9:9958093-9957796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
61, 178
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr9:1991461-1991168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 184
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr9:21461557-21461844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr9:27781821-27781526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr9:4191372-4191669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr9:4940408-4940111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr9:14045764-14046054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr9:44168680-44168980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
75, 173
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:5007064-5007361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:10857111-10857428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 183
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:22655902-22656194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
91, 67
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:22803561-22803256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 177
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:24918197-24917892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:36844838-36844544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:53776784-53777087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
68, 133
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:54413518-54413214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
67, 170
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr9:59479757-59479461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
149, 68
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr9:35460-35168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
68, 135
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr9:1307261-1306954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 171
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr9:1519682-1519978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr9:2834909-2834604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr9:17061266-17060961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
68, 53
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr9:18071573-18071878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 6
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr9:19545602-19545907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
68, 58
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr9:33056874-33057178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr9:50326788-50327093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 10
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr9:62669459-62669156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr9:7058959-7058657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
69, 120
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr9:25548063-25547756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 186
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr9:40143260-40142960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 155
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr9:45876609-45876911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr9:51178578-51178274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr9:10567274-10566965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 116
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr9:56862074-56861784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 121
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:174682-174378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:2548604-2548302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
69, 186
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:6252659-6252960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
108, 64
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:6707827-6707522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:6764681-6764373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
69, 174
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:16178678-16178980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
149, 168
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:17302887-17302584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 167
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:19156201-19155896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:21412403-21412699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
149, 22
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:26325837-26326141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
68, 168
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:27038198-27038509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 193
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:28774176-28773869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
71, 185
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:31810668-31810974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:34059542-34059237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
81, 117
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:34690439-34690138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:37158519-37158216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 114
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:38633870-38634175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
26, 118
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:39303462-39303156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:42570305-42570611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
81, 188
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:42868782-42868476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 172
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:46667707-46667401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:47005833-47006129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
149, 47
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr9:63563505-63563817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
68, 177
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:218025-217717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:777722-777414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
68, 173
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:1062605-1062299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
68, 168
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:1071193-1070887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
68, 168
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:1099685-1099991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:1838046-1838347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
81, 114
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:2856935-2857240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
69, 170
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:2873565-2873872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
68, 172
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:3052356-3052662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
68, 180
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:4673146-4673452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:5430557-5430863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:5452549-5452243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:7830812-7830509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
68, 149
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:13187295-13187601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:17017845-17018151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:18710584-18710889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 126
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:18830829-18831129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:28024910-28025217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
83, 275
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:28657961-28657660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
149, 66
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:31417425-31417119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:33843414-33843720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
89, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:35565448-35565142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:35624405-35624711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
68, 168
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:37253495-37253801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:41312950-41312644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:43494139-43494445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:43496225-43496531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:44202989-44202683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
64, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:45791939-45792245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:46627402-46627708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:47171144-47171450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
69, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:48795201-48794895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:49259415-49259110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:50840523-50840829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
64, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:52526242-52526548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:54459411-54459105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:59496092-59495786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:60409493-60409799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:62818130-62817824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr9:64012138-64011832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr9:1259523-1259836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 172
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr9:9491851-9491552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 111
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr9:52408239-52407923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr9:55797013-55796696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
61, 33
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr9:33477981-33478302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr9:772155-771843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr9:873747-874058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
145, 81
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr9:2214230-2214544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
81, 188
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr9:7104140-7103826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr9:13312654-13312962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
65, 135
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr9:28785435-28785747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
64, 170
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr9:34238668-34238354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr9:36829961-36829647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr9:37174314-37174000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr9:46525115-46524811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
146, 75
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr9:3545918-3546234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 133
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr9:37168563-37168890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 21
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr9:54996964-54997293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
76, 130
               

               
Conread position:
               
2-164
               

               
Cow position:
               
chr9:25596744-25596909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 139
               

               
Conread position:
               
2-206
               

               
Cow position:
               
chr9:791220-791006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 187
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr9:17633579-17633875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 164
               

               
Conread position:
               
3-302
               

               
Cow position:
               
chr9:40316229-40316530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
66, 170
               

               
Conread position:
               
5-143
               

               
Cow position:
               
chr9:29671693-29671553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
6-164
               

               
Cow position:
               
chr9:24725696-24725852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 104
               

               
Conread position:
               
6-272
               

               
Cow position:
               
chr9:30737417-30737151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr9:26576798-26577088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
145, 71
               

               
Conread position:
               
7-307
               

               
Cow position:
               
chr9:30675172-30675470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
75, 124
               

               
Conread position:
               
7-308
               

               
Cow position:
               
chr9:30281919-30281623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 131
               

               
Conread position:
               
7-308
               

               
Cow position:
               
chr9:54995732-54996028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
62, 145
               

               
Conread position:
               
8-266
               

               
Cow position:
               
chr9:10672237-10671981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
8-272
               

               
Cow position:
               
chr9:24996471-24996722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
142, 84
               

               
Conread position:
               
8-272
               

               
Cow position:
               
chr9:34945916-34945649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
64, 181
               

               
Conread position:
               
8-272
               

               
Cow position:
               
chr9:46670029-46670292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
68, 145
               

               
Conread position:
               
8-295
               

               
Cow position:
               
chr9:29300913-29300635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
103, 31
               

               
Conread position:
               
8-296
               

               
Cow position:
               
chr9:23028931-23028644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
8-303
               

               
Cow position:
               
chr9:29338004-29338302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
64, 180
               

               
Conread position:
               
8-312
               

               
Cow position:
               
chr9:49981601-49981894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr9:10678830-10678571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
59, 171
               

               
Conread position:
               
9-272
               

               
Cow position:
               
chr9:27450755-27450491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 96
               

               
Conread position:
               
9-300
               

               
Cow position:
               
chr9:3933014-3932727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 173
               

               
Conread position:
               
9-300
               

               
Cow position:
               
chr9:52002012-52001718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
12, 181
               

               
Conread position:
               
9-302
               

               
Cow position:
               
chr9:34917718-34918006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
16-272
               

               
Cow position:
               
chr9:43538530-43538280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 28
               

               
Conread position:
               
17-163
               

               
Cow position:
               
chr9:9261481-9261628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 106
               

               
Conread position:
               
17-181
               

               
Cow position:
               
chr9:11744580-11744416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 114
               

               
Conread position:
               
17-266
               

               
Cow position:
               
chr9:30439503-30439753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 170
               

               
Conread position:
               
17-266
               

               
Cow position:
               
chr9:62443870-62443630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 78
               

               
Conread position:
               
17-270
               

               
Cow position:
               
chr9:51159951-51160205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
57, 171
               

               
Conread position:
               
17-272
               

               
Cow position:
               
chr9:44820992-44821249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
45, 94
               

               
Conread position:
               
17-293
               

               
Cow position:
               
chr9:4647534-4647262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 23
               

               
Conread position:
               
17-295
               

               
Cow position:
               
chr9:19078972-19079249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 169
               

               
Conread position:
               
17-297
               

               
Cow position:
               
chr9:42902328-42902054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 169
               

               
Conread position:
               
17-298
               

               
Cow position:
               
chr9:15981810-15982090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
55, 108
               

               
Conread position:
               
17-299
               

               
Cow position:
               
chr9:9515778-9516055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 85
               

               
Conread position:
               
17-302
               

               
Cow position:
               
chr9:3411787-3411503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
60, 169
               

               
Conread position:
               
17-303
               

               
Cow position:
               
chr9:12848197-12847910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 160
               

               
Conread position:
               
17-308
               

               
Cow position:
               
chr9:18243876-18243586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
52, 155
               

               
Conread position:
               
17-308
               

               
Cow position:
               
chr9:33068393-33068094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 154
               

               
Conread position:
               
17-311
               

               
Cow position:
               
chr9:23421693-23421986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
60, 184
               

               
Conread position:
               
17-311
               

               
Cow position:
               
chr9:25974876-25974586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
52, 151
               

               
Conread position:
               
17-316
               

               
Cow position:
               
chr9:24423629-24423927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
52, 152
               

               
Conread position:
               
18-301
               

               
Cow position:
               
chr9:61739939-61739658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 46
               

               
Conread position:
               
19-206
               

               
Cow position:
               
chr9:388514-388705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 74
               

               
Conread position:
               
20-303
               

               
Cow position:
               
chr9:26087892-26087612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
62, 160
               

               
Conread position:
               
21-265
               

               
Cow position:
               
chr9:59540554-59540789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 123
               

               
Conread position:
               
28-170
               

               
Cow position:
               
chr9:15214653-15214799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
36-302
               

               
Cow position:
               
chr9:47883157-47882893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
46, 105
               

               
Conread position:
               
37-308
               

               
Cow position:
               
chr9:29106002-29106272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
45, 135
               

               
Conread position:
               
41-272
               

               
Cow position:
               
chr9:20988426-20988660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
49-307
               

               
Cow position:
               
chr9:33999376-33999630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
68-272
               

               
Cow position:
               
chr9:26123875-26124078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 116
               

               
Conread position:
               
68-272
               

               
Cow position:
               
chr9:59760788-59760996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
55, 124
               

               
Conread position:
               
79-304
               

               
Cow position:
               
chr9:4862407-4862179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
81-307
               

               
Cow position:
               
chr9:5414878-5414655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
83-272
               

               
Cow position:
               
chr9:33659440-33659255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
83-297
               

               
Cow position:
               
chr9:5030754-5030545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
87-299
               

               
Cow position:
               
chr9:10326413-10326622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 82
               

               
Conread position:
               
89-264
               

               
Cow position:
               
chr9:17987582-17987406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
90-278
               

               
Cow position:
               
chr9:64054628-64054816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
91-272
               

               
Cow position:
               
chr9:11478074-11477895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
98-307
               

               
Cow position:
               
chr9:8387011-8387216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 71
               

               
Conread position:
               
99-304
               

               
Cow position:
               
chr9:20577956-20578156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
100-295
               

               
Cow position:
               
chr9:27050344-27050534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
103-272
               

               
Cow position:
               
chr9:16981873-16981704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
104-272
               

               
Cow position:
               
chr9:4305889-4305720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 53
               

               
Conread position:
               
105-272
               

               
Cow position:
               
chr9:8951852-8951684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
108-304
               

               
Cow position:
               
chr9:59454696-59454503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
115-308
               

               
Cow position:
               
chr9:58133395-58133202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
116-303
               

               
Cow position:
               
chr9:9442659-9442847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
128-272
               

               
Cow position:
               
chr9:11410423-11410567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
132-288
               

               
Cow position:
               
chr9:28356199-28356042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
18, 52
               
Show alignments to all cow chromosomes.