Cow genome map

Conread name: Ss1.1-Bra1-PBL_15_E02.5

Conread position: 53-395
Cow position: chr1:43976583-43976243 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 238
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 20, 262

Conread position: 66-437
Cow position: chr1:54987522-54987895 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 250
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 50, 58

Conread position: 68-405
Cow position: chr1:79915811-79915465 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 223
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 63

Conread position: 72-268
Cow position: chr1:53020215-53020427 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 75-391
Cow position: chr1:63123167-63122860 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 19

Conread position: 76-384
Cow position: chr1:56440071-56439751 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 218
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 46, 13

Conread position: 77-393
Cow position: chr1:17478584-17478273 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 215
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 60

Conread position: 78-362
Cow position: chr1:68593594-68593312 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 150, 40

Conread position: 79-258
Cow position: chr1:55867151-55867332 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 37, 96

Conread position: 79-316
Cow position: chr1:40967625-40967390 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 163
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 17

Conread position: 79-339
Cow position: chr1:80620412-80620669 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 40, 131

Conread position: 79-368
Cow position: chr1:88482901-88482603 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 214
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 37, 88

Conread position: 79-392
Cow position: chr1:78069209-78069527 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 211
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 35, 98

Conread position: 79-395
Cow position: chr1:77387843-77388161 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 219
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 13

Conread position: 79-396
Cow position: chr1:66828923-66828596 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 216
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 67

Conread position: 79-397
Cow position: chr1:5265807-5266128 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 218
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 83

Conread position: 79-402
Cow position: chr1:29791388-29791705 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 99

Conread position: 79-406
Cow position: chr1:50922744-50923097 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 239
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 17, 91

Conread position: 80-320
Cow position: chr1:15786083-15786320 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 38, 20

Conread position: 80-361
Cow position: chr1:70035471-70035190 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 34, 60

Conread position: 80-361
Cow position: chr1:74545191-74545477 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 33, 62

Conread position: 80-361
Cow position: chr1:91059747-91059462 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 132, 36

Conread position: 80-382
Cow position: chr1:29605486-29605796 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 210
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 47, 22

Conread position: 81-342
Cow position: chr1:71453532-71453798 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 9, 47

Conread position: 81-371
Cow position: chr1:11408932-11408624 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 205
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 33, 177

Conread position: 81-386
Cow position: chr1:26624270-26624576 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 35

Conread position: 82-348
Cow position: chr1:67482350-67482077 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 196
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 62, 34

Conread position: 82-364
Cow position: chr1:40647065-40646777 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 187
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 90, 81

Conread position: 82-391
Cow position: chr1:53648534-53648222 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 40, 86

Conread position: 82-416
Cow position: chr1:9462978-9463307 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 84

Conread position: 84-393
Cow position: chr1:40479102-40479412 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 34, 26

Conread position: 85-371
Cow position: chr1:22774071-22774361 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 29, 92

Conread position: 87-395
Cow position: chr1:64608732-64609040 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 210
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 71

Conread position: 88-319
Cow position: chr1:74754314-74754541 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 72

Conread position: 88-376
Cow position: chr1:5215214-5215504 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 199
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 39

Conread position: 88-398
Cow position: chr1:53781864-53781566 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 37, 28

Conread position: 89-398
Cow position: chr1:68521825-68521511 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 34, 27

Conread position: 90-309
Cow position: chr1:31121618-31121839 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 26, 138

Conread position: 90-345
Cow position: chr1:1940934-1941181 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 85

Conread position: 95-372
Cow position: chr1:4279084-4278811 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 185
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 91, 26

Conread position: 95-405
Cow position: chr1:71121765-71121447 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 225
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 35

Conread position: 109-289
Cow position: chr1:34945221-34945038 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 10

Conread position: 109-394
Cow position: chr1:11210712-11210441 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 168, 9

Conread position: 113-372
Cow position: chr1:3667276-3667530 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 10

Conread position: 122-405
Cow position: chr1:82569857-82569566 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 91, 145

Conread position: 127-358
Cow position: chr1:23577184-23577410 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 61

Conread position: 129-395
Cow position: chr1:29431091-29430820 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 153, 51

Conread position: 134-404
Cow position: chr1:41731865-41732137 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 185
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 88, 39

Conread position: 135-361
Cow position: chr1:84778379-84778149 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 38

Conread position: 144-337
Cow position: chr1:52162965-52163150 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 136, 30

Conread position: 159-341
Cow position: chr1:62424481-62424668 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 52, 121

Conread position: 159-391
Cow position: chr1:60086786-60086546 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 13

Conread position: 215-372
Cow position: chr1:55154050-55154212 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 217-421
Cow position: chr1:7631640-7631442 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 11, 42

Conread position: 218-370
Cow position: chr1:79133074-79132920 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 241-375
Cow position: chr1:6798768-6798903 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 93

Conread position: 243-473
Cow position: chr1:55867450-55867676 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 130

Conread position: 253-393
Cow position: chr1:90298247-90298105 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 253-403
Cow position: chr1:37306169-37306322 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 24, 124

Show alignments to all cow chromosomes.