Cow genome map
| Conread name: | Ss1.1-Bra1-PBL_15_E02.5 |
| Conread position: | 73-326 |
| Cow position: | chr5:57950795-57951040 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 77-336 |
| Cow position: | chr5:13555998-13555737 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 77-395 |
| Cow position: | chr5:8985423-8985744 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 33, 136 |
| Conread position: | 79-346 |
| Cow position: | chr5:9675283-9675557 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 80-285 |
| Cow position: | chr5:60902498-60902277 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 80-363 |
| Cow position: | chr5:11954049-11954321 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 39, 95 |
| Conread position: | 82-347 |
| Cow position: | chr5:38927081-38927354 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 34, 136 |
| Conread position: | 82-399 |
| Cow position: | chr5:41651888-41652210 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 92 |
| Conread position: | 83-210 |
| Cow position: | chr5:47744002-47743873 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 83-230 |
| Cow position: | chr5:15616831-15616976 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 83-393 |
| Cow position: | chr5:13940748-13941065 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 90 |
| Conread position: | 85-259 |
| Cow position: | chr5:28881161-28880980 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 85-395 |
| Cow position: | chr5:22648427-22648106 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 111, 13 |
| Conread position: | 87-395 |
| Cow position: | chr5:34565426-34565740 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 88-372 |
| Cow position: | chr5:49133768-49133484 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 88-391 |
| Cow position: | chr5:64793978-64793668 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 89-365 |
| Cow position: | chr5:32058549-32058265 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 89-387 |
| Cow position: | chr5:56273748-56274050 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 28, 86 |
| Conread position: | 95-366 |
| Cow position: | chr5:45567576-45567300 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 15, 83 |
| Conread position: | 96-367 |
| Cow position: | chr5:55686100-55685826 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 26 |
| Conread position: | 99-385 |
| Cow position: | chr5:46756126-46755835 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 104-319 |
| Cow position: | chr5:70868234-70868016 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 112-397 |
| Cow position: | chr5:48834324-48834039 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 73, 28 |
| Conread position: | 119-231 |
| Cow position: | chr5:19360913-19360801 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 124-384 |
| Cow position: | chr5:59510500-59510232 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 61, 49 |
| Conread position: | 125-331 |
| Cow position: | chr5:29570770-29570973 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 21 |
| Conread position: | 127-383 |
| Cow position: | chr5:35262690-35262431 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 96, 139 |
| Conread position: | 188-395 |
| Cow position: | chr5:12840328-12840539 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 92, 19 |
| Conread position: | 188-399 |
| Cow position: | chr5:38380317-38380102 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 108 |
| Conread position: | 194-392 |
| Cow position: | chr5:66166946-66166747 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 127 |
| Conread position: | 213-375 |
| Cow position: | chr5:23722704-23722868 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 217-383 |
| Cow position: | chr5:60187024-60186858 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 162 |
| Conread position: | 218-403 |
| Cow position: | chr5:35708212-35708399 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 145 |
| Conread position: | 227-397 |
| Cow position: | chr5:61354741-61354913 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 9, 151 |
| Conread position: | 257-386 |
| Cow position: | chr5:28878992-28878861 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 57 |
Show alignments to all cow chromosomes.