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Cow genome map

           
Conread name:
           
Ss1.1-CorL-UMC-pd12cl-021-d03.3
        

               
Conread position:
               
1-156
               

               
Cow position:
               
chr28:2124257-2124417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 124
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr28:19394457-19394637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr28:5553102-5552912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr28:22338830-22339026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
120, 31
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr28:23675970-23676241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr28:21598427-21598141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr28:8408565-8408846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr28:31110179-31109893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
19, 149
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr28:20313101-20313405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
22, 151
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr28:4138843-4138486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 62
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr28:30303360-30303027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr28:3914536-3914897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 201
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr28:5931180-5931544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr28:13474132-13474499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr28:20409219-20409591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 112
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr28:23410497-23410134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr28:12951259-12951617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 144
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr28:23793476-23793117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr28:661945-662304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr28:5074678-5074317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr28:8347561-8347938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 144
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr28:10844945-10845306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 125
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr28:11422978-11422615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr28:16370248-16369885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr28:20124612-20124985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 136
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr28:23724629-23724265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
19, 125
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr28:5817673-5818047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chr28:3492957-3492578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
10, 137
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr28:21502221-21502593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr28:25728032-25728393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
34, 30
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr28:31648900-31649278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
19, 156
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr28:16253030-16252824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
18, 60
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr28:21363574-21363932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
18, 60
               

               
Conread position:
               
2-363
               

               
Cow position:
               
chr28:8787374-8787743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr28:11527429-11527053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
18, 58
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr28:25727210-25727577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr28:26719184-26719539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr28:2819586-2819976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 106
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr28:16109773-16110037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr28:26922532-26922263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr28:18760214-18759912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chr28:26743450-26743822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 143
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chr28:14997899-14998258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 8
               

               
Conread position:
               
3-363
               

               
Cow position:
               
chr28:23459982-23460348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
3-363
               

               
Cow position:
               
chr28:34230067-34230435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr28:27218158-27218531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 8
               

               
Conread position:
               
3-367
               

               
Cow position:
               
chr28:3144063-3143674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 223
               

               
Conread position:
               
3-367
               

               
Cow position:
               
chr28:10053507-10053124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 172
               

               
Conread position:
               
3-367
               

               
Cow position:
               
chr28:21844793-21845160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
34, 8
               

               
Conread position:
               
3-371
               

               
Cow position:
               
chr28:16419001-16419389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
33, 140
               

               
Conread position:
               
3-372
               

               
Cow position:
               
chr28:3746039-3746410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
29, 6
               

               
Conread position:
               
3-372
               

               
Cow position:
               
chr28:29416879-29416512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 8
               

               
Conread position:
               
3-372
               

               
Cow position:
               
chr28:33884245-33884615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 8
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr28:19222763-19222583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 5
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr28:3078843-3078494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 5
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr28:23668954-23668600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 68
               

               
Conread position:
               
4-367
               

               
Cow position:
               
chr28:22132756-22133117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
16, 111
               

               
Conread position:
               
4-372
               

               
Cow position:
               
chr28:3024077-3023703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 8
               

               
Conread position:
               
4-372
               

               
Cow position:
               
chr28:4016373-4016736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
5-190
               

               
Cow position:
               
chr28:22739628-22739811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 138
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chr28:19222315-19222041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chr28:10616121-10615744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
5-367
               

               
Cow position:
               
chr28:9426520-9426142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
6-202
               

               
Cow position:
               
chr28:28903836-28903630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
7-265
               

               
Cow position:
               
chr28:18186392-18186654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
7-295
               

               
Cow position:
               
chr28:18354487-18354200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
30, 94
               

               
Conread position:
               
7-363
               

               
Cow position:
               
chr28:25701029-25700666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
8-370
               

               
Cow position:
               
chr28:7144626-7145011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
9-359
               

               
Cow position:
               
chr28:22308487-22308844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 60
               

               
Conread position:
               
9-363
               

               
Cow position:
               
chr28:21046729-21046385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
26, 108
               

               
Conread position:
               
9-369
               

               
Cow position:
               
chr28:14657539-14657927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
9-371
               

               
Cow position:
               
chr28:8291266-8291625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
10-189
               

               
Cow position:
               
chr28:19023982-19024163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 82
               

               
Conread position:
               
10-296
               

               
Cow position:
               
chr28:33051868-33052166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr28:33163624-33163274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
22, 216
               

               
Conread position:
               
10-363
               

               
Cow position:
               
chr28:5437248-5436882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
10-363
               

               
Cow position:
               
chr28:11884680-11884327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 137
               

               
Conread position:
               
10-364
               

               
Cow position:
               
chr28:5684553-5684905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
38, 47
               

               
Conread position:
               
10-367
               

               
Cow position:
               
chr28:11866820-11866459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
10-370
               

               
Cow position:
               
chr28:34430583-34430212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
22, 126
               

               
Conread position:
               
10-372
               

               
Cow position:
               
chr28:21868295-21868670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
10-372
               

               
Cow position:
               
chr28:24966232-24966599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
24, 20
               

               
Conread position:
               
13-362
               

               
Cow position:
               
chr28:23007891-23007539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
13-363
               

               
Cow position:
               
chr28:30327248-30326897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 57
               

               
Conread position:
               
13-367
               

               
Cow position:
               
chr28:4884420-4884045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
13-367
               

               
Cow position:
               
chr28:11585362-11585001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
13-368
               

               
Cow position:
               
chr28:1837836-1838205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
13-369
               

               
Cow position:
               
chr28:616227-616581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
20, 48
               

               
Conread position:
               
13-372
               

               
Cow position:
               
chr28:29989270-29988895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
21, 57
               

               
Conread position:
               
14-369
               

               
Cow position:
               
chr28:751072-751438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 56
               

               
Conread position:
               
17-271
               

               
Cow position:
               
chr28:14512369-14512637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr28:31987453-31987695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 112
               

               
Conread position:
               
18-273
               

               
Cow position:
               
chr28:2752649-2752388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 130
               

               
Conread position:
               
18-278
               

               
Cow position:
               
chr28:21355074-21355341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
18-278
               

               
Cow position:
               
chr28:21380726-21380990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
16, 40
               

               
Conread position:
               
18-333
               

               
Cow position:
               
chr28:26103563-26103872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
172, 56
               

               
Conread position:
               
18-352
               

               
Cow position:
               
chr28:20963680-20963354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
18-358
               

               
Cow position:
               
chr28:26982895-26982537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 132
               

               
Conread position:
               
18-359
               

               
Cow position:
               
chr28:24082118-24082470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
18-360
               

               
Cow position:
               
chr28:9099787-9100129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
18-363
               

               
Cow position:
               
chr28:5236751-5236391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
18-363
               

               
Cow position:
               
chr28:16085171-16085523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 105
               

               
Conread position:
               
18-363
               

               
Cow position:
               
chr28:23530716-23531067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 320
               

               
Conread position:
               
18-365
               

               
Cow position:
               
chr28:7439093-7439446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
18-365
               

               
Cow position:
               
chr28:30293738-30293380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
47, 105
               

               
Conread position:
               
18-367
               

               
Cow position:
               
chr28:7698133-7697770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 129
               

               
Conread position:
               
18-367
               

               
Cow position:
               
chr28:10606783-10606430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 129
               

               
Conread position:
               
18-370
               

               
Cow position:
               
chr28:4282640-4282277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 41
               

               
Conread position:
               
18-370
               

               
Cow position:
               
chr28:21103997-21103608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
18, 206
               

               
Conread position:
               
18-372
               

               
Cow position:
               
chr28:9285526-9285164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
19-363
               

               
Cow position:
               
chr28:30746879-30746534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
17, 102
               

               
Conread position:
               
20-360
               

               
Cow position:
               
chr28:4308056-4307692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 126
               

               
Conread position:
               
21-367
               

               
Cow position:
               
chr28:10495426-10495091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
23-363
               

               
Cow position:
               
chr28:22571809-22571480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
25-367
               

               
Cow position:
               
chr28:34878112-34877764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 95
               

               
Conread position:
               
26-278
               

               
Cow position:
               
chr28:22321286-22321529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
203, 30
               

               
Conread position:
               
33-359
               

               
Cow position:
               
chr28:5193186-5193523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
34-370
               

               
Cow position:
               
chr28:19262722-19262373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 93
               

               
Conread position:
               
34-372
               

               
Cow position:
               
chr28:27161463-27161103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 112
               

               
Conread position:
               
35-363
               

               
Cow position:
               
chr28:7009107-7008777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
158, 39
               

               
Conread position:
               
38-372
               

               
Cow position:
               
chr28:11346614-11346277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
40-363
               

               
Cow position:
               
chr28:9812158-9812487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
158, 16
               

               
Conread position:
               
41-365
               

               
Cow position:
               
chr28:15263845-15263511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
19, 112
               

               
Conread position:
               
41-367
               

               
Cow position:
               
chr28:3449175-3449518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 95
               

               
Conread position:
               
41-371
               

               
Cow position:
               
chr28:23616283-23616618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
153, 15
               

               
Conread position:
               
41-372
               

               
Cow position:
               
chr28:11426666-11426335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
47-363
               

               
Cow position:
               
chr28:2652419-2652117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
172, 60
               

               
Conread position:
               
48-359
               

               
Cow position:
               
chr28:19564349-19564035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
48-372
               

               
Cow position:
               
chr28:3011393-3011053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 73
               

               
Conread position:
               
50-362
               

               
Cow position:
               
chr28:2279712-2279399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 112
               

               
Conread position:
               
50-371
               

               
Cow position:
               
chr28:12933849-12933524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
51-278
               

               
Cow position:
               
chr28:5166648-5166877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
6, 87
               

               
Conread position:
               
51-363
               

               
Cow position:
               
chr28:4881353-4881045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
142, 89
               

               
Conread position:
               
53-363
               

               
Cow position:
               
chr28:5826836-5827135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
28, 89
               

               
Conread position:
               
55-368
               

               
Cow position:
               
chr28:11079193-11079509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
56-367
               

               
Cow position:
               
chr28:23447935-23447625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
113, 85
               

               
Conread position:
               
56-371
               

               
Cow position:
               
chr28:24343257-24343563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 89
               

               
Conread position:
               
57-348
               

               
Cow position:
               
chr28:18370118-18369824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 84
               

               
Conread position:
               
57-363
               

               
Cow position:
               
chr28:23296212-23296523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
58-340
               

               
Cow position:
               
chr28:26055366-26055659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
66-364
               

               
Cow position:
               
chr28:9740365-9740663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
126, 48
               

               
Conread position:
               
66-367
               

               
Cow position:
               
chr28:34248124-34247835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
72-372
               

               
Cow position:
               
chr28:5139092-5138786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
73-296
               

               
Cow position:
               
chr28:7388861-7388642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 5
               

               
Conread position:
               
77-333
               

               
Cow position:
               
chr28:11559724-11559459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
77-371
               

               
Cow position:
               
chr28:7350567-7350862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
80, 55
               

               
Conread position:
               
79-363
               

               
Cow position:
               
chr28:5262433-5262723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
154, 9
               

               
Conread position:
               
80-278
               

               
Cow position:
               
chr28:25677434-25677231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 40
               

               
Conread position:
               
81-352
               

               
Cow position:
               
chr28:4045766-4046037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
147, 28
               

               
Conread position:
               
82-359
               

               
Cow position:
               
chr28:10297775-10298039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 38
               

               
Conread position:
               
84-364
               

               
Cow position:
               
chr28:10589106-10588828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 9
               

               
Conread position:
               
88-367
               

               
Cow position:
               
chr28:28765984-28765695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
90-370
               

               
Cow position:
               
chr28:11815156-11814867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
103, 52
               

               
Conread position:
               
105-365
               

               
Cow position:
               
chr28:33322392-33322658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
119-364
               

               
Cow position:
               
chr28:3726262-3726003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
119-370
               

               
Cow position:
               
chr28:11059454-11059703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
120-349
               

               
Cow position:
               
chr28:20397418-20397176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
73, 23
               

               
Conread position:
               
121-372
               

               
Cow position:
               
chr28:5235835-5236087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
136-361
               

               
Cow position:
               
chr28:26151980-26152213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
144-368
               

               
Cow position:
               
chr28:20173811-20174047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
145-363
               

               
Cow position:
               
chr28:5630072-5630303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
145-368
               

               
Cow position:
               
chr28:19216795-19217021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
145-369
               

               
Cow position:
               
chr28:11816692-11816474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 134
               

               
Conread position:
               
145-372
               

               
Cow position:
               
chr28:4185881-4186116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
146-365
               

               
Cow position:
               
chr28:6975216-6975440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
146-367
               

               
Cow position:
               
chr28:21008692-21008463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 134
               

               
Conread position:
               
146-371
               

               
Cow position:
               
chr28:5205246-5205463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
55, 133
               

               
Conread position:
               
147-365
               

               
Cow position:
               
chr28:9636481-9636251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
147-368
               

               
Cow position:
               
chr28:13133608-13133845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
147-369
               

               
Cow position:
               
chr28:17739801-17740035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
148-359
               

               
Cow position:
               
chr28:8304224-8304442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
148-363
               

               
Cow position:
               
chr28:4013061-4013287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
148-363
               

               
Cow position:
               
chr28:12598316-12598540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
148-363
               

               
Cow position:
               
chr28:17680599-17680829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 17
               

               
Conread position:
               
148-371
               

               
Cow position:
               
chr28:4937265-4937026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
149-363
               

               
Cow position:
               
chr28:11743841-11743623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
152-371
               

               
Cow position:
               
chr28:23638658-23638884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 99
               

               
Conread position:
               
160-371
               

               
Cow position:
               
chr28:10252927-10252703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
32, 25
               

               
Conread position:
               
163-359
               

               
Cow position:
               
chr28:17728107-17727912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
65, 43
               

               
Conread position:
               
164-367
               

               
Cow position:
               
chr28:6283495-6283281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
164-371
               

               
Cow position:
               
chr28:5231931-5232150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 215
               

               
Conread position:
               
164-371
               

               
Cow position:
               
chr28:7014446-7014668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
164-371
               

               
Cow position:
               
chr28:18797313-18797520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
166-351
               

               
Cow position:
               
chr28:11451497-11451313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
168-363
               

               
Cow position:
               
chr28:11411539-11411335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
33, 113
               

               
Conread position:
               
169-359
               

               
Cow position:
               
chr28:5188431-5188229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
169-360
               

               
Cow position:
               
chr28:5673873-5674073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
169-363
               

               
Cow position:
               
chr28:5441899-5441693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
169-364
               

               
Cow position:
               
chr28:6321815-6322024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
169-365
               

               
Cow position:
               
chr28:29850817-29850616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 167
               

               
Conread position:
               
169-367
               

               
Cow position:
               
chr28:4163581-4163371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
169-367
               

               
Cow position:
               
chr28:6563900-6563685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
169-370
               

               
Cow position:
               
chr28:7132089-7131880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
169-370
               

               
Cow position:
               
chr28:30902124-30902332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
170-358
               

               
Cow position:
               
chr28:10888635-10888824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
6, 110
               

               
Conread position:
               
171-367
               

               
Cow position:
               
chr28:21207368-21207168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
172-363
               

               
Cow position:
               
chr28:24996612-24996414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
173-367
               

               
Cow position:
               
chr28:22630014-22630219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 104
               

               
Conread position:
               
174-372
               

               
Cow position:
               
chr28:7503884-7504095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
175-361
               

               
Cow position:
               
chr28:19994942-19994744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
175-363
               

               
Cow position:
               
chr28:15362583-15362782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
176-367
               

               
Cow position:
               
chr28:7644747-7644949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
177-360
               

               
Cow position:
               
chr28:14242699-14242897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 105
               

               
Conread position:
               
177-368
               

               
Cow position:
               
chr28:11398791-11398585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
178-363
               

               
Cow position:
               
chr28:28601139-28601333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 15
               

               
Conread position:
               
178-367
               

               
Cow position:
               
chr28:20046560-20046751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 99
               

               
Conread position:
               
179-363
               

               
Cow position:
               
chr28:10958814-10959003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
180-367
               

               
Cow position:
               
chr28:32014793-32014994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
180-370
               

               
Cow position:
               
chr28:6935167-6934965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
48, 13
               

               
Conread position:
               
187-362
               

               
Cow position:
               
chr28:9109235-9109414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
187-370
               

               
Cow position:
               
chr28:23728280-23728098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
187-371
               

               
Cow position:
               
chr28:10196846-10196657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 7
               

               
Conread position:
               
187-372
               

               
Cow position:
               
chr28:3423796-3423989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
189-369
               

               
Cow position:
               
chr28:7964657-7964467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 5
               

               
Conread position:
               
193-351
               

               
Cow position:
               
chr28:13160522-13160351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
194-367
               

               
Cow position:
               
chr28:2892277-2892465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
194-367
               

               
Cow position:
               
chr28:27445548-27445366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
194-370
               

               
Cow position:
               
chr28:22085517-22085333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
194-371
               

               
Cow position:
               
chr28:2825444-2825634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
34, 164
               

               
Conread position:
               
195-365
               

               
Cow position:
               
chr28:18761977-18761802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
196-365
               

               
Cow position:
               
chr28:20281785-20281954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 49
               

               
Conread position:
               
196-367
               

               
Cow position:
               
chr28:2077527-2077710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
197-363
               

               
Cow position:
               
chr28:5609889-5609714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
199-363
               

               
Cow position:
               
chr28:21744745-21744916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
207-370
               

               
Cow position:
               
chr28:4783215-4783379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
209-367
               

               
Cow position:
               
chr28:19394911-19395073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
209-371
               

               
Cow position:
               
chr28:16857067-16856894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
210-372
               

               
Cow position:
               
chr28:4230852-4231021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 164
               

               
Conread position:
               
212-365
               

               
Cow position:
               
chr28:16419568-16419731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
15, 137
               

               
Conread position:
               
214-367
               

               
Cow position:
               
chr28:18791083-18791243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
217-363
               

               
Cow position:
               
chr28:16200695-16200536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
218-359
               

               
Cow position:
               
chr28:26960860-26960713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
218-367
               

               
Cow position:
               
chr28:6301130-6301293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
219-372
               

               
Cow position:
               
chr28:24238427-24238272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
223-363
               

               
Cow position:
               
chr28:26574466-26574604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
225-372
               

               
Cow position:
               
chr28:32372303-32372450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
229-369
               

               
Cow position:
               
chr28:12448291-12448429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 103
               

               
Conread position:
               
229-372
               

               
Cow position:
               
chr28:13174494-13174342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 146
               

               
Conread position:
               
230-371
               

               
Cow position:
               
chr28:21263220-21263366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
235-367
               

               
Cow position:
               
chr28:5428686-5428550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 106
               

               
Conread position:
               
244-372
               

               
Cow position:
               
chr28:23841417-23841548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
265-367
               

               
Cow position:
               
chr28:21118786-21118889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
269-363
               

               
Cow position:
               
chr28:24767517-24767612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
269-365
               

               
Cow position:
               
chr28:8165103-8165006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
269-365
               

               
Cow position:
               
chr28:27941670-27941575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
269-367
               

               
Cow position:
               
chr28:3311111-3311011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
269-367
               

               
Cow position:
               
chr28:17620249-17620149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
269-372
               

               
Cow position:
               
chr28:11562133-11562029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
269-372
               

               
Cow position:
               
chr28:16964854-16964753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
270-364
               

               
Cow position:
               
chr28:30921946-30921852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
270-370
               

               
Cow position:
               
chr28:7523304-7523204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
270-370
               

               
Cow position:
               
chr28:8716269-8716169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
272-367
               

               
Cow position:
               
chr28:6124146-6124051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
273-357
               

               
Cow position:
               
chr28:4870682-4870598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
85
               

               
Alignm identity:
               
75
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-368
               

               
Cow position:
               
chr28:14660085-14660173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               
Show alignments to all cow chromosomes.