Cow genome map

Conread name: Ss1.1-Emb1-C0005182_F21.5

Conread position: 2-324
Cow position: chr12:8311111-8311444 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 3-341
Cow position: chr12:21941709-21942050 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 21

Conread position: 3-347
Cow position: chr12:26947053-26946703 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 245
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 27, 267

Conread position: 35-324
Cow position: chr12:22332602-22332887 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 9

Conread position: 38-324
Cow position: chr12:21197936-21198223 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 13

Conread position: 51-325
Cow position: chr12:32653533-32653812 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 51-346
Cow position: chr12:21901930-21902225 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 9

Conread position: 52-230
Cow position: chr12:26141804-26141983 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 22, 0

Conread position: 52-232
Cow position: chr12:48405261-48405443 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 15, 35

Conread position: 52-235
Cow position: chr12:21207685-21207868 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 52-288
Cow position: chr12:42859837-42859600 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-304
Cow position: chr12:14662643-14662390 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 52-309
Cow position: chr12:6406658-6406403 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 148

Conread position: 52-309
Cow position: chr12:8678132-8677873 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 52-309
Cow position: chr12:11098232-11098490 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 196

Conread position: 52-309
Cow position: chr12:20998132-20997885 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 22, 66

Conread position: 52-309
Cow position: chr12:21426684-21426942 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-317
Cow position: chr12:43031393-43031128 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 97

Conread position: 52-324
Cow position: chr12:45261606-45261886 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-325
Cow position: chr12:37558545-37558824 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 52-347
Cow position: chr12:2282536-2282830 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 274

Conread position: 52-382
Cow position: chr12:18501033-18501347 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 107

Conread position: 52-419
Cow position: chr12:21500106-21500457 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 250
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 22, 71

Conread position: 52-480
Cow position: chr12:15951274-15950855 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 100

Conread position: 53-317
Cow position: chr12:3360895-3361161 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 53-317
Cow position: chr12:21254665-21254399 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 53-356
Cow position: chr12:2838863-2838566 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 176

Conread position: 54-288
Cow position: chr12:25101069-25100834 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 54-309
Cow position: chr12:252064-251810 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 115

Conread position: 54-309
Cow position: chr12:1402483-1402738 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 171

Conread position: 54-309
Cow position: chr12:22205754-22205500 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 76

Conread position: 54-347
Cow position: chr12:27932953-27932659 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 279

Conread position: 54-347
Cow position: chr12:28766027-28765736 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 257

Conread position: 60-363
Cow position: chr12:2797-3098 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 242

Conread position: 61-323
Cow position: chr12:33986162-33986426 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 0

Conread position: 72-404
Cow position: chr12:34854786-34854463 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 221
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 277, 76

Conread position: 116-324
Cow position: chr12:5861209-5861416 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 82

Conread position: 141-317
Cow position: chr12:23240084-23240260 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 172, 79

Conread position: 203-317
Cow position: chr12:31544920-31545035 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 108, 0

Conread position: 214-323
Cow position: chr12:4157530-4157641 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 97, 0

Conread position: 256-390
Cow position: chr12:48405445-48405577 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 95, 49

Show alignments to all cow chromosomes.