Cow genome map

Conread name: Ss1.1-Emb1-C0005182_F21.5

Conread position: 2-320
Cow position: chr14:44130499-44130827 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 223

Conread position: 2-324
Cow position: chr14:22242463-22242799 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 2-324
Cow position: chr14:45767587-45767920 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 2-344
Cow position: chr14:44225988-44226335 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 25

Conread position: 2-480
Cow position: chr14:35387551-35387080 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 20

Conread position: 3-304
Cow position: chr14:44685630-44685941 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 3-309
Cow position: chr14:13778548-13778858 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 3-309
Cow position: chr14:30585363-30585049 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 302

Conread position: 3-324
Cow position: chr14:50110153-50110484 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 7-324
Cow position: chr14:5201473-5201163 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 62

Conread position: 7-414
Cow position: chr14:12608794-12609189 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 50

Conread position: 11-323
Cow position: chr14:23901192-23900881 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 25

Conread position: 11-344
Cow position: chr14:17491848-17491512 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 25

Conread position: 17-244
Cow position: chr14:41755447-41755682 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 13, 28

Conread position: 22-480
Cow position: chr14:40339295-40339749 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 112

Conread position: 27-395
Cow position: chr14:38146205-38146566 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 20

Conread position: 38-286
Cow position: chr14:23260291-23260046 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 171
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 26, 126

Conread position: 38-374
Cow position: chr14:43553053-43553391 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 225
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 5, 48

Conread position: 38-379
Cow position: chr14:31887310-31887653 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 232
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 37, 13

Conread position: 41-278
Cow position: chr14:48824215-48824455 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 180
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 30, 0

Conread position: 45-361
Cow position: chr14:45205718-45206030 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 75

Conread position: 51-199
Cow position: chr14:45080165-45080313 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 112

Conread position: 51-309
Cow position: chr14:45029471-45029221 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 52

Conread position: 51-422
Cow position: chr14:47589513-47589880 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 241
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 155

Conread position: 52-288
Cow position: chr14:22032040-22031805 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 66

Conread position: 52-304
Cow position: chr14:17685041-17685295 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-304
Cow position: chr14:44287605-44287352 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 144

Conread position: 52-309
Cow position: chr14:13864438-13864179 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-317
Cow position: chr14:30596738-30596472 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 13

Conread position: 52-317
Cow position: chr14:45672399-45672133 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 154

Conread position: 52-318
Cow position: chr14:17001409-17001148 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 168

Conread position: 52-318
Cow position: chr14:38532648-38532380 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 52-318
Cow position: chr14:42151968-42152236 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 52-321
Cow position: chr14:48406043-48405774 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 184
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 33, 96

Conread position: 52-324
Cow position: chr14:13660343-13660068 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 97

Conread position: 52-324
Cow position: chr14:19619867-19620138 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 52-324
Cow position: chr14:23690583-23690311 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 65

Conread position: 52-324
Cow position: chr14:41085137-41084861 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 124

Conread position: 52-325
Cow position: chr14:23257004-23257282 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 52-325
Cow position: chr14:44855781-44855508 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 125

Conread position: 52-338
Cow position: chr14:46464716-46465004 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 198

Conread position: 52-344
Cow position: chr14:13272897-13273187 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 136

Conread position: 52-349
Cow position: chr14:750215-750519 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-354
Cow position: chr14:44377075-44377386 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 22, 9

Conread position: 52-359
Cow position: chr14:29048257-29047941 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 78

Conread position: 52-361
Cow position: chr14:33394131-33393815 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 52-390
Cow position: chr14:41490652-41490313 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 232
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 85

Conread position: 52-391
Cow position: chr14:43034247-43033906 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 237
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 25, 170

Conread position: 52-394
Cow position: chr14:14309431-14309074 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 254
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 22, 82

Conread position: 52-406
Cow position: chr14:37414242-37413896 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 176

Conread position: 52-414
Cow position: chr14:22019040-22019398 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 63

Conread position: 52-421
Cow position: chr14:41407467-41407832 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 117

Conread position: 52-422
Cow position: chr14:27992666-27992291 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 250
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 22, 178

Conread position: 52-474
Cow position: chr14:46084269-46084690 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 60

Conread position: 52-480
Cow position: chr14:45303719-45303293 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 323

Conread position: 53-298
Cow position: chr14:13480088-13479842 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 53-309
Cow position: chr14:9045212-9045469 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 53-324
Cow position: chr14:37223548-37223819 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 193

Conread position: 53-324
Cow position: chr14:47624206-47624471 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 200

Conread position: 53-325
Cow position: chr14:50134716-50134994 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 53-349
Cow position: chr14:2283985-2284288 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 54-288
Cow position: chr14:5511470-5511704 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 83

Conread position: 54-288
Cow position: chr14:19328621-19328386 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-309
Cow position: chr14:5528709-5528965 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-309
Cow position: chr14:7472022-7472271 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 58

Conread position: 54-309
Cow position: chr14:20782104-20782359 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 53

Conread position: 54-323
Cow position: chr14:16920043-16919773 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-324
Cow position: chr14:45917063-45917336 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-328
Cow position: chr14:16273648-16273375 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 199

Conread position: 54-331
Cow position: chr14:28994207-28993929 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 257

Conread position: 54-338
Cow position: chr14:13302678-13302960 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 53

Conread position: 54-347
Cow position: chr14:11154519-11154225 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 175

Conread position: 54-347
Cow position: chr14:15276932-15276639 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 34

Conread position: 55-347
Cow position: chr14:48254667-48254364 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 19, 266

Conread position: 58-324
Cow position: chr14:45712335-45712073 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 185

Conread position: 60-321
Cow position: chr14:45850877-45851137 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 52

Conread position: 60-324
Cow position: chr14:7830886-7830622 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 28

Conread position: 60-324
Cow position: chr14:36967908-36968173 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 60-327
Cow position: chr14:44422207-44422475 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 60-331
Cow position: chr14:44551538-44551809 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 12

Conread position: 60-422
Cow position: chr14:34775181-34775551 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 250
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 169

Conread position: 62-246
Cow position: chr14:21743258-21743443 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 152

Conread position: 63-346
Cow position: chr14:38040539-38040816 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 182
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 49

Conread position: 64-373
Cow position: chr14:47640798-47641098 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 208
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 12, 165

Conread position: 66-391
Cow position: chr14:47654394-47654723 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 231
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 9, 228

Conread position: 72-361
Cow position: chr14:38816539-38816256 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 188
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 72-393
Cow position: chr14:35928846-35929162 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 102

Conread position: 75-324
Cow position: chr14:45771105-45770861 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 78-389
Cow position: chr14:13326466-13326163 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 283, 39

Conread position: 81-314
Cow position: chr14:42123526-42123291 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 15, 0

Conread position: 84-346
Cow position: chr14:45160775-45161037 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 65

Conread position: 90-421
Cow position: chr14:44580641-44580963 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 16

Conread position: 103-331
Cow position: chr14:45833847-45834081 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 0

Conread position: 111-414
Cow position: chr14:33675517-33675821 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 5

Conread position: 126-286
Cow position: chr14:13621428-13621267 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 45, 66

Conread position: 140-324
Cow position: chr14:45565063-45565246 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 8, 0

Conread position: 141-309
Cow position: chr14:12743333-12743165 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 154-353
Cow position: chr14:40169955-40169760 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 12, 42

Conread position: 178-394
Cow position: chr14:44777213-44777006 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 188, 27

Conread position: 181-395
Cow position: chr14:5073724-5073939 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 165, 192

Conread position: 189-309
Cow position: chr14:45080829-45080948 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 193-317
Cow position: chr14:43557223-43557348 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 118, 0

Conread position: 195-422
Cow position: chr14:45235798-45236020 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 140, 8

Show alignments to all cow chromosomes.