Cow genome map
Conread name: | Ss1.1-Emb1-C0005182_F21.5 |
Conread position: | 2-323 |
Cow position: | chr16:53045602-53045927 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 0 |
Conread position: | 3-288 |
Cow position: | chr16:28471859-28471565 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 211 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 3-306 |
Cow position: | chr16:5918721-5919037 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 3-317 |
Cow position: | chr16:36362122-36361796 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 24 |
Conread position: | 3-325 |
Cow position: | chr16:5661096-5661427 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 3-347 |
Cow position: | chr16:10204181-10203835 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 309 |
Conread position: | 7-399 |
Cow position: | chr16:31376021-31375634 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 113 |
Conread position: | 42-480 |
Cow position: | chr16:49235857-49235421 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 169, 78 |
Conread position: | 51-325 |
Cow position: | chr16:34529619-34529896 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 47 |
Conread position: | 52-185 |
Cow position: | chr16:16276207-16276074 (view UCSC Genome Browser custom track) |
Alignm length: | 136 |
Alignm identity: | 105 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 22, 58 |
Conread position: | 52-252 |
Cow position: | chr16:36232311-36232115 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 154 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 23, 138 |
Conread position: | 52-282 |
Cow position: | chr16:42051082-42050857 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 181 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 94 |
Conread position: | 52-288 |
Cow position: | chr16:2483844-2483606 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 189 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 145 |
Conread position: | 52-288 |
Cow position: | chr16:10437542-10437779 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 189 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 52-308 |
Cow position: | chr16:56551425-56551676 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 202 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 97 |
Conread position: | 52-309 |
Cow position: | chr16:1568155-1567897 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 52-309 |
Cow position: | chr16:2239434-2239183 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 191 |
Alignm E-value: | 8.00141e-43 |
Alignm gaps (pig, cow): | 26, 217 |
Conread position: | 52-317 |
Cow position: | chr16:28171060-28170797 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 259, 15 |
Conread position: | 52-317 |
Cow position: | chr16:36282700-36282963 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 126 |
Conread position: | 52-323 |
Cow position: | chr16:28438490-28438215 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 178 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 22, 32 |
Conread position: | 52-324 |
Cow position: | chr16:6549225-6548952 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 52-324 |
Cow position: | chr16:19713585-19713317 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 209 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 67 |
Conread position: | 52-324 |
Cow position: | chr16:25084920-25085193 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 52-331 |
Cow position: | chr16:836328-836608 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 259 |
Conread position: | 52-336 |
Cow position: | chr16:31592605-31592323 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 200 |
Conread position: | 52-341 |
Cow position: | chr16:32039-32333 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 129 |
Conread position: | 52-347 |
Cow position: | chr16:2728002-2727694 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 226 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 22, 209 |
Conread position: | 52-347 |
Cow position: | chr16:15492007-15492303 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 287 |
Conread position: | 52-347 |
Cow position: | chr16:26663048-26663344 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 33 |
Conread position: | 52-347 |
Cow position: | chr16:29046321-29046617 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 285 |
Conread position: | 52-349 |
Cow position: | chr16:6942923-6943235 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 52-349 |
Cow position: | chr16:24155145-24154847 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 196 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 120, 148 |
Conread position: | 52-359 |
Cow position: | chr16:25187942-25188252 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 142 |
Conread position: | 52-390 |
Cow position: | chr16:6967029-6967357 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 220 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 21, 149 |
Conread position: | 52-406 |
Cow position: | chr16:44966472-44966812 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 247 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 22, 46 |
Conread position: | 52-414 |
Cow position: | chr16:335593-335947 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 53 |
Conread position: | 52-414 |
Cow position: | chr16:9929840-9930197 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 81 |
Conread position: | 52-421 |
Cow position: | chr16:32935458-32935839 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 219 |
Conread position: | 52-478 |
Cow position: | chr16:42740123-42739696 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 104 |
Conread position: | 53-324 |
Cow position: | chr16:10808455-10808722 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 61 |
Conread position: | 53-439 |
Cow position: | chr16:49257282-49256896 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 71 |
Conread position: | 53-480 |
Cow position: | chr16:25156920-25156495 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 53 |
Conread position: | 54-288 |
Cow position: | chr16:14666528-14666293 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 191 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 54-288 |
Cow position: | chr16:27734502-27734266 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 188 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 54-288 |
Cow position: | chr16:40296877-40296642 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 183 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 54-304 |
Cow position: | chr16:9777387-9777637 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 25 |
Conread position: | 54-304 |
Cow position: | chr16:12538622-12538373 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 76 |
Conread position: | 54-304 |
Cow position: | chr16:15184105-15184355 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 83 |
Conread position: | 54-304 |
Cow position: | chr16:15566051-15566296 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 136 |
Conread position: | 54-309 |
Cow position: | chr16:8816803-8816547 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 54-309 |
Cow position: | chr16:25341266-25341522 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 202 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 54-309 |
Cow position: | chr16:25440919-25441181 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 195 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 54-309 |
Cow position: | chr16:25458170-25457908 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 195 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 54-347 |
Cow position: | chr16:407733-407437 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 260 |
Conread position: | 54-347 |
Cow position: | chr16:5483624-5483918 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 248 |
Conread position: | 54-347 |
Cow position: | chr16:23982612-23982905 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 237 |
Conread position: | 54-349 |
Cow position: | chr16:23253204-23252910 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 62 |
Conread position: | 55-309 |
Cow position: | chr16:43897965-43897714 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 192 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 107 |
Conread position: | 56-347 |
Cow position: | chr16:2411666-2411373 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 277 |
Conread position: | 60-318 |
Cow position: | chr16:11052469-11052726 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 157 |
Conread position: | 60-324 |
Cow position: | chr16:7905928-7906191 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 206 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 59 |
Conread position: | 60-324 |
Cow position: | chr16:20255004-20254739 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 60-324 |
Cow position: | chr16:39820939-39821202 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 206 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 141 |
Conread position: | 66-391 |
Cow position: | chr16:47562996-47563337 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 231 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 80, 39 |
Conread position: | 66-404 |
Cow position: | chr16:10565968-10565636 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 214 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 14, 29 |
Conread position: | 67-372 |
Cow position: | chr16:48681761-48681462 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 202 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 14, 92 |
Conread position: | 68-321 |
Cow position: | chr16:51685753-51686004 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 186 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 185, 0 |
Conread position: | 69-353 |
Cow position: | chr16:41559975-41560251 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 195 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 5, 94 |
Conread position: | 72-321 |
Cow position: | chr16:41758127-41757879 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 170 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 90, 0 |
Conread position: | 72-346 |
Cow position: | chr16:16030106-16030378 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 187 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 120, 127 |
Conread position: | 85-382 |
Cow position: | chr16:18500014-18499722 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 269, 32 |
Conread position: | 109-360 |
Cow position: | chr16:30047850-30048102 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 182 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 177, 41 |
Conread position: | 115-338 |
Cow position: | chr16:23670264-23670048 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 161 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 82, 78 |
Conread position: | 115-406 |
Cow position: | chr16:52815124-52814836 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 212, 107 |
Conread position: | 127-470 |
Cow position: | chr16:29033092-29033431 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 41 |
Conread position: | 143-317 |
Cow position: | chr16:31832022-31832198 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 141 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 72, 0 |
Conread position: | 150-333 |
Cow position: | chr16:25153128-25153304 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 142 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 150-417 |
Cow position: | chr16:48626632-48626889 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 185 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 138, 85 |
Conread position: | 182-447 |
Cow position: | chr16:16273404-16273138 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 168, 78 |
Conread position: | 193-359 |
Cow position: | chr16:4302887-4302715 (view UCSC Genome Browser custom track) |
Alignm length: | 174 |
Alignm identity: | 127 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 125, 111 |
Conread position: | 201-321 |
Cow position: | chr16:29675930-29675810 (view UCSC Genome Browser custom track) |
Alignm length: | 121 |
Alignm identity: | 98 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 203-480 |
Cow position: | chr16:25257055-25257331 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 247, 148 |
Conread position: | 226-418 |
Cow position: | chr16:5889392-5889583 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 144 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 26, 119 |
Conread position: | 238-433 |
Cow position: | chr16:23807454-23807651 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 159 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 41, 52 |
Conread position: | 271-480 |
Cow position: | chr16:42050606-42050414 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 163 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 328-421 |
Cow position: | chr16:25153959-25154053 (view UCSC Genome Browser custom track) |
Alignm length: | 95 |
Alignm identity: | 80 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.