Cow genome map

Conread name: Ss1.1-Emb1-C0005182_F21.5

Conread position: 2-323
Cow position: chr16:53045602-53045927 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 3-288
Cow position: chr16:28471859-28471565 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 27, 0

Conread position: 3-306
Cow position: chr16:5918721-5919037 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 3-317
Cow position: chr16:36362122-36361796 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 24

Conread position: 3-325
Cow position: chr16:5661096-5661427 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 3-347
Cow position: chr16:10204181-10203835 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 309

Conread position: 7-399
Cow position: chr16:31376021-31375634 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 113

Conread position: 42-480
Cow position: chr16:49235857-49235421 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 78

Conread position: 51-325
Cow position: chr16:34529619-34529896 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 47

Conread position: 52-185
Cow position: chr16:16276207-16276074 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 58

Conread position: 52-252
Cow position: chr16:36232311-36232115 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 23, 138

Conread position: 52-282
Cow position: chr16:42051082-42050857 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 94

Conread position: 52-288
Cow position: chr16:2483844-2483606 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 145

Conread position: 52-288
Cow position: chr16:10437542-10437779 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-308
Cow position: chr16:56551425-56551676 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 97

Conread position: 52-309
Cow position: chr16:1568155-1567897 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-309
Cow position: chr16:2239434-2239183 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 26, 217

Conread position: 52-317
Cow position: chr16:28171060-28170797 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 15

Conread position: 52-317
Cow position: chr16:36282700-36282963 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 126

Conread position: 52-323
Cow position: chr16:28438490-28438215 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 178
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 32

Conread position: 52-324
Cow position: chr16:6549225-6548952 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 52-324
Cow position: chr16:19713585-19713317 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 67

Conread position: 52-324
Cow position: chr16:25084920-25085193 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-331
Cow position: chr16:836328-836608 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 259

Conread position: 52-336
Cow position: chr16:31592605-31592323 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 200

Conread position: 52-341
Cow position: chr16:32039-32333 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 129

Conread position: 52-347
Cow position: chr16:2728002-2727694 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 22, 209

Conread position: 52-347
Cow position: chr16:15492007-15492303 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 287

Conread position: 52-347
Cow position: chr16:26663048-26663344 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 33

Conread position: 52-347
Cow position: chr16:29046321-29046617 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 285

Conread position: 52-349
Cow position: chr16:6942923-6943235 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-349
Cow position: chr16:24155145-24154847 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 120, 148

Conread position: 52-359
Cow position: chr16:25187942-25188252 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 142

Conread position: 52-390
Cow position: chr16:6967029-6967357 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 220
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 149

Conread position: 52-406
Cow position: chr16:44966472-44966812 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 247
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 22, 46

Conread position: 52-414
Cow position: chr16:335593-335947 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 53

Conread position: 52-414
Cow position: chr16:9929840-9930197 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 81

Conread position: 52-421
Cow position: chr16:32935458-32935839 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 219

Conread position: 52-478
Cow position: chr16:42740123-42739696 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 104

Conread position: 53-324
Cow position: chr16:10808455-10808722 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 61

Conread position: 53-439
Cow position: chr16:49257282-49256896 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 71

Conread position: 53-480
Cow position: chr16:25156920-25156495 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 53

Conread position: 54-288
Cow position: chr16:14666528-14666293 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-288
Cow position: chr16:27734502-27734266 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-288
Cow position: chr16:40296877-40296642 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 54-304
Cow position: chr16:9777387-9777637 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 25

Conread position: 54-304
Cow position: chr16:12538622-12538373 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 76

Conread position: 54-304
Cow position: chr16:15184105-15184355 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 83

Conread position: 54-304
Cow position: chr16:15566051-15566296 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 136

Conread position: 54-309
Cow position: chr16:8816803-8816547 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-309
Cow position: chr16:25341266-25341522 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-309
Cow position: chr16:25440919-25441181 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-309
Cow position: chr16:25458170-25457908 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-347
Cow position: chr16:407733-407437 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 260

Conread position: 54-347
Cow position: chr16:5483624-5483918 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 248

Conread position: 54-347
Cow position: chr16:23982612-23982905 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 237

Conread position: 54-349
Cow position: chr16:23253204-23252910 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 62

Conread position: 55-309
Cow position: chr16:43897965-43897714 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 107

Conread position: 56-347
Cow position: chr16:2411666-2411373 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 277

Conread position: 60-318
Cow position: chr16:11052469-11052726 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 157

Conread position: 60-324
Cow position: chr16:7905928-7906191 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 59

Conread position: 60-324
Cow position: chr16:20255004-20254739 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 60-324
Cow position: chr16:39820939-39821202 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 141

Conread position: 66-391
Cow position: chr16:47562996-47563337 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 231
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 80, 39

Conread position: 66-404
Cow position: chr16:10565968-10565636 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 214
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 29

Conread position: 67-372
Cow position: chr16:48681761-48681462 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 92

Conread position: 68-321
Cow position: chr16:51685753-51686004 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 185, 0

Conread position: 69-353
Cow position: chr16:41559975-41560251 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 195
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 5, 94

Conread position: 72-321
Cow position: chr16:41758127-41757879 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 90, 0

Conread position: 72-346
Cow position: chr16:16030106-16030378 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 120, 127

Conread position: 85-382
Cow position: chr16:18500014-18499722 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 32

Conread position: 109-360
Cow position: chr16:30047850-30048102 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 177, 41

Conread position: 115-338
Cow position: chr16:23670264-23670048 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 82, 78

Conread position: 115-406
Cow position: chr16:52815124-52814836 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 107

Conread position: 127-470
Cow position: chr16:29033092-29033431 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 41

Conread position: 143-317
Cow position: chr16:31832022-31832198 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 72, 0

Conread position: 150-333
Cow position: chr16:25153128-25153304 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 31, 0

Conread position: 150-417
Cow position: chr16:48626632-48626889 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 138, 85

Conread position: 182-447
Cow position: chr16:16273404-16273138 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 78

Conread position: 193-359
Cow position: chr16:4302887-4302715 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 125, 111

Conread position: 201-321
Cow position: chr16:29675930-29675810 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 203-480
Cow position: chr16:25257055-25257331 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 148

Conread position: 226-418
Cow position: chr16:5889392-5889583 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 26, 119

Conread position: 238-433
Cow position: chr16:23807454-23807651 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 159
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 41, 52

Conread position: 271-480
Cow position: chr16:42050606-42050414 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 328-421
Cow position: chr16:25153959-25154053 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 0

Show alignments to all cow chromosomes.