Cow genome map

Conread name: Ss1.1-Emb1-C0005182_F21.5

Conread position: 2-317
Cow position: chr25:11375378-11375048 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 3-317
Cow position: chr25:26922199-26922517 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 291

Conread position: 3-323
Cow position: chr25:35362452-35362121 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 46

Conread position: 3-324
Cow position: chr25:17468725-17468395 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 263

Conread position: 3-340
Cow position: chr25:33665894-33665552 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 23

Conread position: 3-347
Cow position: chr25:26279236-26279589 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 316

Conread position: 3-347
Cow position: chr25:34347021-34346687 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 72

Conread position: 4-324
Cow position: chr25:18060617-18060295 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 228
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 28, 138

Conread position: 4-421
Cow position: chr25:33243812-33244213 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 114

Conread position: 11-325
Cow position: chr25:18195101-18194786 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 21

Conread position: 52-270
Cow position: chr25:18027591-18027372 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-288
Cow position: chr25:25506685-25506920 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 0

Conread position: 52-297
Cow position: chr25:12942666-12942420 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-309
Cow position: chr25:13781064-13781322 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 52-317
Cow position: chr25:20776864-20776601 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 79

Conread position: 52-317
Cow position: chr25:27022532-27022265 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-317
Cow position: chr25:32580000-32580266 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 181

Conread position: 52-324
Cow position: chr25:14016202-14016472 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 9

Conread position: 52-324
Cow position: chr25:18275799-18275521 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-325
Cow position: chr25:17589514-17589242 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 33

Conread position: 52-325
Cow position: chr25:19917118-19917396 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-347
Cow position: chr25:8674950-8675245 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 274

Conread position: 52-415
Cow position: chr25:23345305-23344952 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 178

Conread position: 52-419
Cow position: chr25:18093053-18093412 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 96

Conread position: 52-421
Cow position: chr25:11933491-11933125 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 35

Conread position: 52-421
Cow position: chr25:12759565-12759195 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 210

Conread position: 53-324
Cow position: chr25:34656410-34656139 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 77

Conread position: 53-345
Cow position: chr25:9544100-9544395 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 35

Conread position: 54-285
Cow position: chr25:20629614-20629834 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 20, 64

Conread position: 54-304
Cow position: chr25:22147531-22147782 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-347
Cow position: chr25:18889978-18889685 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 40

Conread position: 60-324
Cow position: chr25:18303443-18303707 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 173

Conread position: 61-343
Cow position: chr25:36240599-36240875 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 191

Conread position: 64-288
Cow position: chr25:34014443-34014217 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 10, 141

Conread position: 66-422
Cow position: chr25:18255318-18254963 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 59

Conread position: 72-286
Cow position: chr25:18421723-18421939 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 137, 57

Conread position: 89-395
Cow position: chr25:19288266-19287967 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 214
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 264, 40

Conread position: 171-331
Cow position: chr25:17560478-17560321 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 130
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 132, 0

Conread position: 172-323
Cow position: chr25:6172058-6172211 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 139, 0

Conread position: 207-309
Cow position: chr25:24659444-24659546 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.