Cow genome map

Conread name: Ss1.1-Emb1-C0005182_F21.5

Conread position: 2-480
Cow position: chr4:21338332-21337858 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 72

Conread position: 3-324
Cow position: chr4:11618518-11618848 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 297

Conread position: 3-324
Cow position: chr4:26887184-26886868 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 48

Conread position: 3-325
Cow position: chr4:18424859-18424522 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 3-347
Cow position: chr4:33073436-33073088 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 182

Conread position: 9-293
Cow position: chr4:528679-528960 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 176
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 67, 27

Conread position: 32-390
Cow position: chr4:15193756-15194117 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 235
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 20

Conread position: 38-211
Cow position: chr4:24198505-24198329 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 42-421
Cow position: chr4:8598442-8598063 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 212

Conread position: 52-235
Cow position: chr4:29531989-29531806 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 22, 97

Conread position: 52-266
Cow position: chr4:3830205-3830415 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 13, 79

Conread position: 52-278
Cow position: chr4:39272215-39271985 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 168
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 29, 200

Conread position: 52-288
Cow position: chr4:355635-355871 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 134

Conread position: 52-288
Cow position: chr4:17926530-17926293 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-309
Cow position: chr4:25599894-25599636 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-309
Cow position: chr4:27333169-27333418 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 96

Conread position: 52-309
Cow position: chr4:32211892-32212150 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 52-309
Cow position: chr4:47717881-47717624 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 127

Conread position: 52-317
Cow position: chr4:101208-100941 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 52-317
Cow position: chr4:158240-158507 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-317
Cow position: chr4:16056327-16056593 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 85

Conread position: 52-318
Cow position: chr4:18516621-18516887 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 144

Conread position: 52-320
Cow position: chr4:1497034-1496765 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 178
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 52-323
Cow position: chr4:602719-602992 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 0

Conread position: 52-323
Cow position: chr4:9355046-9354772 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-323
Cow position: chr4:13547754-13548028 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 52-323
Cow position: chr4:65223809-65223535 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-324
Cow position: chr4:66179263-66178990 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 52-325
Cow position: chr4:1930898-1930621 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 33

Conread position: 52-325
Cow position: chr4:6268903-6268629 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 202

Conread position: 52-325
Cow position: chr4:30307734-30307456 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 52-341
Cow position: chr4:48026122-48026413 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 201

Conread position: 52-347
Cow position: chr4:12241494-12241197 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 260

Conread position: 52-359
Cow position: chr4:4176154-4176453 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 225

Conread position: 52-402
Cow position: chr4:23493463-23493794 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 248
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 23, 78

Conread position: 52-478
Cow position: chr4:60264843-60264416 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-480
Cow position: chr4:1464200-1463785 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 182

Conread position: 52-480
Cow position: chr4:28830753-28831177 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 258

Conread position: 52-480
Cow position: chr4:46663918-46664333 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 67

Conread position: 53-309
Cow position: chr4:47764445-47764188 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 147

Conread position: 53-344
Cow position: chr4:3125505-3125819 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 53-480
Cow position: chr4:34185144-34184754 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 12

Conread position: 54-271
Cow position: chr4:4905873-4906091 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-286
Cow position: chr4:3961319-3961551 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 10

Conread position: 54-304
Cow position: chr4:16359610-16359861 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 54-309
Cow position: chr4:12587025-12587281 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 54-309
Cow position: chr4:24445474-24445224 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 184

Conread position: 54-309
Cow position: chr4:36896100-36896350 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 94

Conread position: 54-309
Cow position: chr4:41331164-41331421 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-309
Cow position: chr4:43880836-43881091 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 115

Conread position: 54-312
Cow position: chr4:41119740-41119999 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-338
Cow position: chr4:13492303-13492585 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 145

Conread position: 54-347
Cow position: chr4:43319909-43319626 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 80

Conread position: 55-309
Cow position: chr4:6490634-6490382 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 55

Conread position: 55-349
Cow position: chr4:33493536-33493847 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 19, 210

Conread position: 56-328
Cow position: chr4:44724812-44725084 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 255

Conread position: 57-347
Cow position: chr4:45049568-45049278 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 195

Conread position: 60-324
Cow position: chr4:61256629-61256889 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 130

Conread position: 60-347
Cow position: chr4:66925732-66926017 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 147

Conread position: 61-317
Cow position: chr4:5879900-5880157 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 65

Conread position: 68-225
Cow position: chr4:6214817-6214660 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 6, 81

Conread position: 68-321
Cow position: chr4:40824512-40824258 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 0

Conread position: 69-392
Cow position: chr4:17530685-17530366 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 213
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 170, 79

Conread position: 72-228
Cow position: chr4:496211-496056 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 120, 0

Conread position: 72-321
Cow position: chr4:62565729-62565979 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 169
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 205, 127

Conread position: 72-346
Cow position: chr4:57979374-57979647 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 175

Conread position: 72-361
Cow position: chr4:969298-969009 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 155, 98

Conread position: 72-407
Cow position: chr4:11393591-11393264 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 32

Conread position: 75-239
Cow position: chr4:27443203-27443370 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 90, 0

Conread position: 75-330
Cow position: chr4:22471919-22472172 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 96, 34

Conread position: 76-323
Cow position: chr4:9587013-9587262 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 0

Conread position: 85-393
Cow position: chr4:11384718-11385022 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 85

Conread position: 90-421
Cow position: chr4:21564884-21565191 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 236
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 135, 68

Conread position: 91-347
Cow position: chr4:26749116-26748879 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 177
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 99-410
Cow position: chr4:60630612-60630321 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 211
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 250, 48

Conread position: 119-356
Cow position: chr4:51044131-51043903 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 191, 17

Conread position: 128-309
Cow position: chr4:4415884-4416065 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 136-347
Cow position: chr4:31565493-31565284 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 61, 13

Conread position: 141-324
Cow position: chr4:10408492-10408671 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 88, 40

Conread position: 165-325
Cow position: chr4:41954312-41954477 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 0

Conread position: 176-325
Cow position: chr4:18190256-18190408 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 125
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 135, 49

Conread position: 176-325
Cow position: chr4:41957979-41958132 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 124
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 135, 0

Conread position: 179-304
Cow position: chr4:31669122-31669249 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 233-388
Cow position: chr4:27443479-27443635 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 129, 0

Conread position: 268-383
Cow position: chr4:35795586-35795702 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 285-480
Cow position: chr4:54955707-54955901 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 160
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 14, 7

Show alignments to all cow chromosomes.