Cow genome map
Conread name: | Ss1.1-Emb1-C0005182_F21.5 |
Conread position: | 2-480 |
Cow position: | chr4:21338332-21337858 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 72 |
Conread position: | 3-324 |
Cow position: | chr4:11618518-11618848 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 297 |
Conread position: | 3-324 |
Cow position: | chr4:26887184-26886868 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 48 |
Conread position: | 3-325 |
Cow position: | chr4:18424859-18424522 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 3-347 |
Cow position: | chr4:33073436-33073088 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 182 |
Conread position: | 9-293 |
Cow position: | chr4:528679-528960 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 176 |
Alignm E-value: | 9.00054e-42 |
Alignm gaps (pig, cow): | 67, 27 |
Conread position: | 32-390 |
Cow position: | chr4:15193756-15194117 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 235 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 43, 20 |
Conread position: | 38-211 |
Cow position: | chr4:24198505-24198329 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 126 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 42-421 |
Cow position: | chr4:8598442-8598063 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 212 |
Conread position: | 52-235 |
Cow position: | chr4:29531989-29531806 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 143 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 22, 97 |
Conread position: | 52-266 |
Cow position: | chr4:3830205-3830415 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 155 |
Alignm E-value: | 6e-28 |
Alignm gaps (pig, cow): | 13, 79 |
Conread position: | 52-278 |
Cow position: | chr4:39272215-39271985 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 168 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 29, 200 |
Conread position: | 52-288 |
Cow position: | chr4:355635-355871 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 192 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 134 |
Conread position: | 52-288 |
Cow position: | chr4:17926530-17926293 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 186 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 52-309 |
Cow position: | chr4:25599894-25599636 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 202 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 52-309 |
Cow position: | chr4:27333169-27333418 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 96 |
Conread position: | 52-309 |
Cow position: | chr4:32211892-32212150 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 52-309 |
Cow position: | chr4:47717881-47717624 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 127 |
Conread position: | 52-317 |
Cow position: | chr4:101208-100941 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 52-317 |
Cow position: | chr4:158240-158507 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 52-317 |
Cow position: | chr4:16056327-16056593 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 85 |
Conread position: | 52-318 |
Cow position: | chr4:18516621-18516887 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 209 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 144 |
Conread position: | 52-320 |
Cow position: | chr4:1497034-1496765 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 178 |
Alignm E-value: | 9e-31 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 52-323 |
Cow position: | chr4:602719-602992 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 259, 0 |
Conread position: | 52-323 |
Cow position: | chr4:9355046-9354772 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 52-323 |
Cow position: | chr4:13547754-13548028 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 52-323 |
Cow position: | chr4:65223809-65223535 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 52-324 |
Cow position: | chr4:66179263-66178990 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 52-325 |
Cow position: | chr4:1930898-1930621 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 33 |
Conread position: | 52-325 |
Cow position: | chr4:6268903-6268629 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 202 |
Conread position: | 52-325 |
Cow position: | chr4:30307734-30307456 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 52-341 |
Cow position: | chr4:48026122-48026413 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 201 |
Conread position: | 52-347 |
Cow position: | chr4:12241494-12241197 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 260 |
Conread position: | 52-359 |
Cow position: | chr4:4176154-4176453 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 204 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 22, 225 |
Conread position: | 52-402 |
Cow position: | chr4:23493463-23493794 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 248 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 23, 78 |
Conread position: | 52-478 |
Cow position: | chr4:60264843-60264416 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 52-480 |
Cow position: | chr4:1464200-1463785 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 182 |
Conread position: | 52-480 |
Cow position: | chr4:28830753-28831177 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 258 |
Conread position: | 52-480 |
Cow position: | chr4:46663918-46664333 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 67 |
Conread position: | 53-309 |
Cow position: | chr4:47764445-47764188 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 147 |
Conread position: | 53-344 |
Cow position: | chr4:3125505-3125819 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 53-480 |
Cow position: | chr4:34185144-34184754 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 12 |
Conread position: | 54-271 |
Cow position: | chr4:4905873-4906091 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 176 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 54-286 |
Cow position: | chr4:3961319-3961551 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 192 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 10 |
Conread position: | 54-304 |
Cow position: | chr4:16359610-16359861 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 54-309 |
Cow position: | chr4:12587025-12587281 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 201 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 54-309 |
Cow position: | chr4:24445474-24445224 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 184 |
Conread position: | 54-309 |
Cow position: | chr4:36896100-36896350 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 192 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 94 |
Conread position: | 54-309 |
Cow position: | chr4:41331164-41331421 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 198 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 54-309 |
Cow position: | chr4:43880836-43881091 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 115 |
Conread position: | 54-312 |
Cow position: | chr4:41119740-41119999 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 54-338 |
Cow position: | chr4:13492303-13492585 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 145 |
Conread position: | 54-347 |
Cow position: | chr4:43319909-43319626 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 80 |
Conread position: | 55-309 |
Cow position: | chr4:6490634-6490382 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 55 |
Conread position: | 55-349 |
Cow position: | chr4:33493536-33493847 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 223 |
Alignm E-value: | 7e-40 |
Alignm gaps (pig, cow): | 19, 210 |
Conread position: | 56-328 |
Cow position: | chr4:44724812-44725084 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 255 |
Conread position: | 57-347 |
Cow position: | chr4:45049568-45049278 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 195 |
Conread position: | 60-324 |
Cow position: | chr4:61256629-61256889 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 130 |
Conread position: | 60-347 |
Cow position: | chr4:66925732-66926017 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 147 |
Conread position: | 61-317 |
Cow position: | chr4:5879900-5880157 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 65 |
Conread position: | 68-225 |
Cow position: | chr4:6214817-6214660 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 120 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 6, 81 |
Conread position: | 68-321 |
Cow position: | chr4:40824512-40824258 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 164 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 6, 0 |
Conread position: | 69-392 |
Cow position: | chr4:17530685-17530366 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 213 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 170, 79 |
Conread position: | 72-228 |
Cow position: | chr4:496211-496056 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 119 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 120, 0 |
Conread position: | 72-321 |
Cow position: | chr4:62565729-62565979 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 169 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 205, 127 |
Conread position: | 72-346 |
Cow position: | chr4:57979374-57979647 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 245, 175 |
Conread position: | 72-361 |
Cow position: | chr4:969298-969009 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 196 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 155, 98 |
Conread position: | 72-407 |
Cow position: | chr4:11393591-11393264 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 229, 32 |
Conread position: | 75-239 |
Cow position: | chr4:27443203-27443370 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 125 |
Alignm E-value: | 6e-28 |
Alignm gaps (pig, cow): | 90, 0 |
Conread position: | 75-330 |
Cow position: | chr4:22471919-22472172 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 172 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 96, 34 |
Conread position: | 76-323 |
Cow position: | chr4:9587013-9587262 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 192 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 235, 0 |
Conread position: | 85-393 |
Cow position: | chr4:11384718-11385022 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 85 |
Conread position: | 90-421 |
Cow position: | chr4:21564884-21565191 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 236 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 135, 68 |
Conread position: | 91-347 |
Cow position: | chr4:26749116-26748879 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 177 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 99-410 |
Cow position: | chr4:60630612-60630321 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 211 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 250, 48 |
Conread position: | 119-356 |
Cow position: | chr4:51044131-51043903 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 171 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 191, 17 |
Conread position: | 128-309 |
Cow position: | chr4:4415884-4416065 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 142 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 136-347 |
Cow position: | chr4:31565493-31565284 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 153 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 61, 13 |
Conread position: | 141-324 |
Cow position: | chr4:10408492-10408671 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 143 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 88, 40 |
Conread position: | 165-325 |
Cow position: | chr4:41954312-41954477 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 131 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 15, 0 |
Conread position: | 176-325 |
Cow position: | chr4:18190256-18190408 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 125 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 135, 49 |
Conread position: | 176-325 |
Cow position: | chr4:41957979-41958132 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 124 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 135, 0 |
Conread position: | 179-304 |
Cow position: | chr4:31669122-31669249 (view UCSC Genome Browser custom track) |
Alignm length: | 128 |
Alignm identity: | 102 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 65, 0 |
Conread position: | 233-388 |
Cow position: | chr4:27443479-27443635 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 115 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 129, 0 |
Conread position: | 268-383 |
Cow position: | chr4:35795586-35795702 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 91 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 98, 0 |
Conread position: | 285-480 |
Cow position: | chr4:54955707-54955901 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 160 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 14, 7 |
Show alignments to all cow chromosomes.