Cow genome map
| Conread name: | Ss1.1-Emb1-C0005190_O01.5 |
| Conread position: | 1-334 |
| Cow position: | chr17:22589506-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 130, 140 |
| Conread position: | 1-346 |
| Cow position: | chr17:22498883-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-357 |
| Cow position: | chr17:22551836-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-401 |
| Cow position: | chr17:22499303-22498903 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 257 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-408 |
| Cow position: | chr17:22589590-22589183 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 1-417 |
| Cow position: | chr17:22452121-22451705 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 122 |
| Conread position: | 1-419 |
| Cow position: | chr17:22451953-22451537 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 164, 170 |
| Conread position: | 1-422 |
| Cow position: | chr17:22473510-22473932 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 1-422 |
| Cow position: | chr17:22552172-22551751 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 371 |
| Conread position: | 1-422 |
| Cow position: | chr17:22552760-22552339 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-422 |
| Cow position: | chr17:22589674-22589253 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 384 |
| Conread position: | 1-423 |
| Cow position: | chr17:22452205-22451782 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 0 |
| Conread position: | 1-423 |
| Cow position: | chr17:22552844-22552422 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 372 |
| Conread position: | 1-425 |
| Cow position: | chr17:22473426-22473850 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-425 |
| Cow position: | chr17:22498967-22498543 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 390, 375 |
| Conread position: | 1-425 |
| Cow position: | chr17:22551920-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-425 |
| Cow position: | chr17:22552424-22552000 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 1-425 |
| Cow position: | chr17:22589926-22589502 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-425 |
| Cow position: | chr17:22590010-22589586 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-426 |
| Cow position: | chr17:22499135-22498710 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 384 |
| Conread position: | 1-426 |
| Cow position: | chr17:22552088-22551663 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr17:22452373-22451942 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 108 |
| Conread position: | 1-432 |
| Cow position: | chr17:22499387-22498956 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr17:22552004-22551573 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 382 |
| Conread position: | 1-432 |
| Cow position: | chr17:22552256-22551825 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 366 |
| Conread position: | 1-432 |
| Cow position: | chr17:22552508-22552077 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 382 |
| Conread position: | 1-432 |
| Cow position: | chr17:22552592-22552161 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 208 |
| Conread position: | 1-432 |
| Cow position: | chr17:22552676-22552245 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr17:22552928-22552497 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 382 |
| Conread position: | 1-432 |
| Cow position: | chr17:22590094-22589663 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 382 |
| Conread position: | 1-432 |
| Cow position: | chr17:22590178-22589747 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 402 |
| Conread position: | 4-425 |
| Cow position: | chr17:22553009-22552588 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-347 |
| Cow position: | chr17:22498790-22498462 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 254, 0 |
| Conread position: | 10-365 |
| Cow position: | chr17:22452028-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 10-419 |
| Cow position: | chr17:22499210-22498801 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-422 |
| Cow position: | chr17:22589749-22589337 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 384 |
| Conread position: | 10-422 |
| Cow position: | chr17:22590253-22589841 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 141 |
| Conread position: | 10-424 |
| Cow position: | chr17:22553087-22552673 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 364 |
| Conread position: | 10-425 |
| Cow position: | chr17:22473351-22473766 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 366 |
| Conread position: | 10-425 |
| Cow position: | chr17:22499042-22498627 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-425 |
| Cow position: | chr17:22552331-22551916 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 373 |
| Conread position: | 10-425 |
| Cow position: | chr17:22589833-22589418 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 10-431 |
| Cow position: | chr17:22452280-22451859 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 10-432 |
| Cow position: | chr17:22473267-22473689 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-432 |
| Cow position: | chr17:22452513-22452110 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 343, 354 |
| Conread position: | 40-425 |
| Cow position: | chr17:22553141-22552756 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 343 |
| Conread position: | 43-432 |
| Cow position: | chr17:22590304-22589915 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-431 |
| Cow position: | chr17:22452412-22452027 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-421 |
| Cow position: | chr17:22499398-22499051 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 316 |
| Conread position: | 89-421 |
| Cow position: | chr17:22473262-22473594 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-425 |
| Cow position: | chr17:22553142-22552840 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-431 |
| Cow position: | chr17:22499391-22499125 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 183-431 |
| Cow position: | chr17:22553166-22552918 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 209-426 |
| Cow position: | chr17:22590306-22590089 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 177, 165 |
Show alignments to all cow chromosomes.