Cow genome map
| Conread name: | Ss1.1-Emb1-C0005190_O01.5 |
| Conread position: | 1-253 |
| Cow position: | chr2:78756180-78756428 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 219, 125 |
| Conread position: | 1-326 |
| Cow position: | chr2:82800121-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 185, 180 |
| Conread position: | 1-362 |
| Cow position: | chr2:82800037-82800398 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 202 |
| Conread position: | 1-368 |
| Cow position: | chr2:86465441-86465808 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 214, 204 |
| Conread position: | 1-369 |
| Cow position: | chr2:86465274-86465641 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 201, 5 |
| Conread position: | 1-419 |
| Cow position: | chr2:78755342-78755757 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 148 |
| Conread position: | 1-421 |
| Cow position: | chr2:78755175-78755593 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 162 |
| Conread position: | 1-423 |
| Cow position: | chr2:78754269-78754689 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 166 |
| Conread position: | 1-425 |
| Cow position: | chr2:78754839-78755263 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-425 |
| Cow position: | chr2:78755007-78755430 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 0 |
| Conread position: | 1-425 |
| Cow position: | chr2:82799701-82800125 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 274 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 1-431 |
| Cow position: | chr2:82799617-82800047 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-431 |
| Cow position: | chr2:82799869-82800299 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 275 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 380, 373 |
| Conread position: | 1-431 |
| Cow position: | chr2:86465189-86465619 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 68 |
| Conread position: | 1-432 |
| Cow position: | chr2:5874587-5874156 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 268 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 1-432 |
| Cow position: | chr2:5875007-5874576 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 127, 132 |
| Conread position: | 1-432 |
| Cow position: | chr2:82799785-82800216 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 270 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr2:82799953-82800384 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 348 |
| Conread position: | 2-422 |
| Cow position: | chr2:78755844-78756265 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 161 |
| Conread position: | 2-425 |
| Cow position: | chr2:78755427-78755847 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 4-425 |
| Cow position: | chr2:78754689-78755095 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 4-425 |
| Cow position: | chr2:78755596-78756015 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 7-425 |
| Cow position: | chr2:78754773-78755179 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 10-421 |
| Cow position: | chr2:78754528-78754923 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 10-423 |
| Cow position: | chr2:78755100-78755512 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 238 |
| Conread position: | 10-425 |
| Cow position: | chr2:82799458-82799873 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 119, 113 |
| Conread position: | 10-431 |
| Cow position: | chr2:82799542-82799963 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 118, 103 |
| Conread position: | 10-432 |
| Cow position: | chr2:86465702-86466124 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 11-431 |
| Cow position: | chr2:78754114-78754529 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 13-432 |
| Cow position: | chr2:78755687-78756107 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 118 |
| Conread position: | 15-425 |
| Cow position: | chr2:78754937-78755346 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 0 |
| Conread position: | 15-432 |
| Cow position: | chr2:5875161-5874744 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 250, 254 |
| Conread position: | 15-432 |
| Cow position: | chr2:78754617-78755018 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 16-417 |
| Cow position: | chr2:5874740-5874339 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 111, 118 |
| Conread position: | 17-431 |
| Cow position: | chr2:78755943-78756355 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 171 |
| Conread position: | 19-368 |
| Cow position: | chr2:86465795-86466144 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 53, 43 |
| Conread position: | 24-432 |
| Cow position: | chr2:86465128-86465536 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 39-431 |
| Cow position: | chr2:82799401-82799795 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 57-431 |
| Cow position: | chr2:86465074-86465451 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 36 |
| Conread position: | 70-373 |
| Cow position: | chr2:48689465-48689163 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 90-431 |
| Cow position: | chr2:86465950-86466289 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 258, 0 |
Show alignments to all cow chromosomes.