Cow genome map
| Conread name: | Ss1.1-Emb1-C0005190_O01.5 |
| Conread position: | 1-324 |
| Cow position: | chr23:25724036-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 1-326 |
| Cow position: | chr23:25660410-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 189, 202 |
| Conread position: | 1-335 |
| Cow position: | chr23:24546987-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 213, 206 |
| Conread position: | 1-347 |
| Cow position: | chr23:24639727-24640073 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-354 |
| Cow position: | chr23:24626399-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 0 |
| Conread position: | 1-368 |
| Cow position: | chr23:24522561-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-369 |
| Cow position: | chr23:25626121-25626489 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 1-372 |
| Cow position: | chr23:24535786-24535414 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 1-402 |
| Cow position: | chr23:25698481-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 158, 178 |
| Conread position: | 1-407 |
| Cow position: | chr23:25626622-25627028 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 149 |
| Conread position: | 1-411 |
| Cow position: | chr23:24547071-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 203 |
| Conread position: | 1-422 |
| Cow position: | chr23:24639643-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 365 |
| Conread position: | 1-423 |
| Cow position: | chr23:24560547-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 373 |
| Conread position: | 1-425 |
| Cow position: | chr23:24522642-24522221 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 280 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 1-425 |
| Cow position: | chr23:24547239-24546815 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 384 |
| Conread position: | 1-431 |
| Cow position: | chr23:24535954-24535524 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 202 |
| Conread position: | 1-431 |
| Cow position: | chr23:24547155-24546725 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 371 |
| Conread position: | 1-431 |
| Cow position: | chr23:24639475-24639905 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 358 |
| Conread position: | 1-431 |
| Cow position: | chr23:25626457-25626884 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 281 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 65, 81 |
| Conread position: | 1-431 |
| Cow position: | chr23:25660242-25660672 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 1-432 |
| Cow position: | chr23:24639559-24639990 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 365 |
| Conread position: | 1-432 |
| Cow position: | chr23:25626037-25626468 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 1-432 |
| Cow position: | chr23:25626373-25626801 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 157, 162 |
| Conread position: | 10-203 |
| Cow position: | chr23:24522384-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-335 |
| Cow position: | chr23:25626715-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 122, 111 |
| Conread position: | 10-357 |
| Cow position: | chr23:24654049-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 10-408 |
| Cow position: | chr23:25626550-25626945 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 264 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 10-419 |
| Cow position: | chr23:24535861-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 267 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 10-421 |
| Cow position: | chr23:25660335-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 269 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 10-423 |
| Cow position: | chr23:24626324-24626736 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 373 |
| Conread position: | 10-425 |
| Cow position: | chr23:24560706-24560291 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 365 |
| Conread position: | 10-425 |
| Cow position: | chr23:24639400-24639815 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 10-431 |
| Cow position: | chr23:24536029-24535608 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 365 |
| Conread position: | 10-431 |
| Cow position: | chr23:24547314-24546893 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 376 |
| Conread position: | 10-431 |
| Cow position: | chr23:24560622-24560201 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 381 |
| Conread position: | 10-431 |
| Cow position: | chr23:24560874-24560453 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-431 |
| Cow position: | chr23:24639316-24639737 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 198 |
| Conread position: | 10-431 |
| Cow position: | chr23:25625962-25626383 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 10-431 |
| Cow position: | chr23:25626214-25626632 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 227, 220 |
| Conread position: | 10-431 |
| Cow position: | chr23:25698640-25698219 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 10-432 |
| Cow position: | chr23:24560790-24560368 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-432 |
| Cow position: | chr23:24639232-24639654 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 187, 198 |
| Conread position: | 15-401 |
| Cow position: | chr23:25724106-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 16-432 |
| Cow position: | chr23:25660173-25660589 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 189 |
| Conread position: | 20-424 |
| Cow position: | chr23:24522791-24522390 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 69-367 |
| Cow position: | chr23:24521986-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 216, 5 |
| Conread position: | 73-432 |
| Cow position: | chr23:24626303-24626662 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 310 |
| Conread position: | 81-431 |
| Cow position: | chr23:24547327-24546977 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 125 |
| Conread position: | 87-426 |
| Cow position: | chr23:24654042-24654381 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 298, 275 |
| Conread position: | 93-425 |
| Cow position: | chr23:24560875-24560543 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-431 |
| Cow position: | chr23:25660167-25660504 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 223, 219 |
| Conread position: | 98-432 |
| Cow position: | chr23:25724107-25723773 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 123-425 |
| Cow position: | chr23:24626269-24626571 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 142-432 |
| Cow position: | chr23:24560910-24560620 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 156-425 |
| Cow position: | chr23:24536051-24535782 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 158-425 |
| Cow position: | chr23:24547334-24547067 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 178-431 |
| Cow position: | chr23:25724111-25723858 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 208, 197 |
| Conread position: | 183-431 |
| Cow position: | chr23:24654054-24654302 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 212, 208 |
| Conread position: | 183-432 |
| Cow position: | chr23:25698635-25698386 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 23 |
Show alignments to all cow chromosomes.