Cow genome map
| Conread name: | Ss1.1-Emb1-C0005190_O01.5 |
| Conread position: | 1-210 |
| Cow position: | chr24:17013338-17013546 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 1-331 |
| Cow position: | chr24:17070717-17071047 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 127, 120 |
| Conread position: | 1-355 |
| Cow position: | chr24:17077835-17077482 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 331, 0 |
| Conread position: | 1-402 |
| Cow position: | chr24:17077919-17077518 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 371 |
| Conread position: | 1-403 |
| Cow position: | chr24:17035532-17035130 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-407 |
| Cow position: | chr24:17070633-17071039 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 371 |
| Conread position: | 1-425 |
| Cow position: | chr24:17035700-17035276 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 382 |
| Conread position: | 1-425 |
| Cow position: | chr24:17035784-17035360 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-425 |
| Cow position: | chr24:17036372-17035948 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 382 |
| Conread position: | 1-432 |
| Cow position: | chr24:17036036-17035605 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 1-432 |
| Cow position: | chr24:17036540-17036109 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 1-432 |
| Cow position: | chr24:17070549-17070980 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-253 |
| Cow position: | chr24:17070810-17071053 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-347 |
| Cow position: | chr24:17035271-17034935 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 10-420 |
| Cow position: | chr24:17070390-17070800 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 10-425 |
| Cow position: | chr24:17036612-17036200 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 53 |
| Conread position: | 10-426 |
| Cow position: | chr24:17035943-17035527 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-426 |
| Cow position: | chr24:17077994-17077578 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 368 |
| Conread position: | 10-427 |
| Cow position: | chr24:17035607-17035190 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 141 |
| Conread position: | 10-431 |
| Cow position: | chr24:17035859-17035438 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 113 |
| Conread position: | 10-431 |
| Cow position: | chr24:17078078-17077657 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-379 |
| Cow position: | chr24:17013185-17013547 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 139, 134 |
| Conread position: | 16-425 |
| Cow position: | chr24:17070480-17070889 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-431 |
| Cow position: | chr24:17036102-17035690 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-431 |
| Cow position: | chr24:17078153-17077741 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 348 |
| Conread position: | 19-432 |
| Cow position: | chr24:17035430-17035017 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 266 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 187, 193 |
| Conread position: | 40-424 |
| Cow position: | chr24:17035325-17034940 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 43-425 |
| Cow position: | chr24:17036246-17035864 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 332 |
| Conread position: | 43-425 |
| Cow position: | chr24:17036414-17036032 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 340 |
| Conread position: | 58-427 |
| Cow position: | chr24:17036147-17035778 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 82-421 |
| Cow position: | chr24:17013167-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 311, 292 |
| Conread position: | 93-425 |
| Cow position: | chr24:17070389-17070721 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 94-432 |
| Cow position: | chr24:17036612-17036277 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 146-432 |
| Cow position: | chr24:17013147-17013433 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 165, 152 |
| Conread position: | 156-425 |
| Cow position: | chr24:17070368-17070637 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 37, 46 |
Show alignments to all cow chromosomes.