Cow genome map
| Conread name: | Ss1.1-Emb1-C0005190_O01.5 |
| Conread position: | 1-325 |
| Cow position: | chr28:7758010-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-347 |
| Cow position: | chr28:7810597-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-357 |
| Cow position: | chr28:7758498-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 190, 208 |
| Conread position: | 1-358 |
| Cow position: | chr28:11333711-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 154, 149 |
| Conread position: | 1-362 |
| Cow position: | chr28:33210234-33210596 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 1-363 |
| Cow position: | chr28:9298823-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 1-407 |
| Cow position: | chr28:7757926-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 37 |
| Conread position: | 1-409 |
| Cow position: | chr28:9299311-9299717 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 217, 211 |
| Conread position: | 1-423 |
| Cow position: | chr28:9253193-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 373 |
| Conread position: | 1-424 |
| Cow position: | chr28:9298740-9299160 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 275 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 392, 74 |
| Conread position: | 1-425 |
| Cow position: | chr28:7757590-7758014 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 382 |
| Conread position: | 1-425 |
| Cow position: | chr28:7757758-7758182 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 364 |
| Conread position: | 1-425 |
| Cow position: | chr28:7810438-7810853 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 97 |
| Conread position: | 1-425 |
| Cow position: | chr28:9290178-9290596 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-431 |
| Cow position: | chr28:7758178-7758592 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 373, 158 |
| Conread position: | 1-431 |
| Cow position: | chr28:9253109-9253539 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 384 |
| Conread position: | 1-431 |
| Cow position: | chr28:11334047-11333617 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 386, 364 |
| Conread position: | 1-431 |
| Cow position: | chr28:11334131-11333701 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 1-432 |
| Cow position: | chr28:34695918-34696349 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 3-346 |
| Cow position: | chr28:9290344-9290685 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 96, 31 |
| Conread position: | 4-431 |
| Cow position: | chr28:11334212-11333785 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 124, 116 |
| Conread position: | 10-332 |
| Cow position: | chr28:9299236-9299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 207, 193 |
| Conread position: | 10-362 |
| Cow position: | chr28:34673454-34673806 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 10-407 |
| Cow position: | chr28:11333870-11333473 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-420 |
| Cow position: | chr28:9298666-9299072 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 10-422 |
| Cow position: | chr28:7757431-7757843 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-422 |
| Cow position: | chr28:7757683-7758095 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-422 |
| Cow position: | chr28:9290267-9290677 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 10-423 |
| Cow position: | chr28:7758423-7758835 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 0 |
| Conread position: | 10-425 |
| Cow position: | chr28:7757515-7757930 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 199 |
| Conread position: | 10-425 |
| Cow position: | chr28:7810363-7810769 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 10-431 |
| Cow position: | chr28:9253034-9253455 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-431 |
| Cow position: | chr28:34695843-34696264 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 145, 135 |
| Conread position: | 10-432 |
| Cow position: | chr28:7757851-7758273 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 11-368 |
| Cow position: | chr28:34679544-34679184 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 123, 110 |
| Conread position: | 12-422 |
| Cow position: | chr28:9299001-9299396 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 351, 28 |
| Conread position: | 14-425 |
| Cow position: | chr28:7757351-7757762 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 369 |
| Conread position: | 14-431 |
| Cow position: | chr28:7757273-7757684 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 61 |
| Conread position: | 15-422 |
| Cow position: | chr28:9252955-9253362 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 355 |
| Conread position: | 15-425 |
| Cow position: | chr28:7810527-7810937 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 359 |
| Conread position: | 15-431 |
| Cow position: | chr28:7810284-7810691 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 0 |
| Conread position: | 15-432 |
| Cow position: | chr28:7757190-7757601 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 212, 131 |
| Conread position: | 16-302 |
| Cow position: | chr28:33210333-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 16-425 |
| Cow position: | chr28:34673376-34673785 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 111, 116 |
| Conread position: | 18-285 |
| Cow position: | chr28:9290442-9290708 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 187, 22 |
| Conread position: | 40-425 |
| Cow position: | chr28:9252895-9253281 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 108 |
| Conread position: | 56-368 |
| Cow position: | chr28:34696225-34696537 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 58-419 |
| Cow position: | chr28:9290067-9290423 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 41, 56 |
| Conread position: | 58-425 |
| Cow position: | chr28:7758387-7758754 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 235 |
| Conread position: | 73-418 |
| Cow position: | chr28:9289912-9290257 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 73-425 |
| Cow position: | chr28:9298561-9298911 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 40, 106 |
| Conread position: | 75-421 |
| Cow position: | chr28:9299217-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 310 |
| Conread position: | 81-431 |
| Cow position: | chr28:33210230-33210581 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 113, 128 |
| Conread position: | 89-425 |
| Cow position: | chr28:7758334-7758670 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 93-431 |
| Cow position: | chr28:34695842-34696180 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 136, 146 |
| Conread position: | 95-431 |
| Cow position: | chr28:34679544-34679205 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 98-347 |
| Cow position: | chr28:7810283-7810532 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 105, 111 |
| Conread position: | 170-431 |
| Cow position: | chr28:34673362-34673623 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.