Cow genome map
| Conread name: | Ss1.1-Emb1-C0005190_O01.5 |
| Conread position: | 1-334 |
| Cow position: | chr3:68046027-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 315, 0 |
| Conread position: | 1-420 |
| Cow position: | chr3:62721983-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 373 |
| Conread position: | 1-425 |
| Cow position: | chr3:62742701-62743107 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 182, 48 |
| Conread position: | 1-425 |
| Cow position: | chr3:68027098-68027522 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 204, 217 |
| Conread position: | 1-431 |
| Cow position: | chr3:62722067-62721637 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 1-431 |
| Cow position: | chr3:62722151-62721721 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 1-431 |
| Cow position: | chr3:68045691-68046121 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 39 |
| Conread position: | 1-432 |
| Cow position: | chr3:62722235-62721804 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 385 |
| Conread position: | 1-432 |
| Cow position: | chr3:68027182-68027613 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 9-334 |
| Cow position: | chr3:68027442-68027765 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 146, 141 |
| Conread position: | 10-334 |
| Cow position: | chr3:77350897-77350576 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 10-368 |
| Cow position: | chr3:68045952-68046310 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 188, 206 |
| Conread position: | 10-425 |
| Cow position: | chr3:62742545-62742956 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 276 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 339, 96 |
| Conread position: | 10-425 |
| Cow position: | chr3:68027275-68027690 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 362, 375 |
| Conread position: | 10-425 |
| Cow position: | chr3:68045616-68046031 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 10-431 |
| Cow position: | chr3:62742377-62742793 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 264, 0 |
| Conread position: | 10-432 |
| Cow position: | chr3:62722310-62721888 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 13-425 |
| Cow position: | chr3:62742880-62743270 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 15-419 |
| Cow position: | chr3:62743033-62743432 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 357, 83 |
| Conread position: | 15-425 |
| Cow position: | chr3:77351053-77350653 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 16-368 |
| Cow position: | chr3:68027365-68027717 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 16-432 |
| Cow position: | chr3:68045790-68046206 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 270 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 127, 115 |
| Conread position: | 21-370 |
| Cow position: | chr3:62743118-62743467 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-424 |
| Cow position: | chr3:62742250-62742623 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 341, 103 |
| Conread position: | 58-425 |
| Cow position: | chr3:68045916-68046283 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 324, 311 |
| Conread position: | 70-422 |
| Cow position: | chr3:68027083-68027435 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 297, 313 |
| Conread position: | 70-432 |
| Cow position: | chr3:62742353-62742712 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 220, 228 |
| Conread position: | 71-424 |
| Cow position: | chr3:68027000-68027353 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 218, 225 |
| Conread position: | 75-419 |
| Cow position: | chr3:62742525-62742865 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 13, 116 |
| Conread position: | 79-422 |
| Cow position: | chr3:68045601-68045944 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 310, 288 |
| Conread position: | 82-431 |
| Cow position: | chr3:62722322-62721973 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 117-422 |
| Cow position: | chr3:68026962-68027267 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 89, 99 |
| Conread position: | 165-425 |
| Cow position: | chr3:62722323-62722063 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 225, 229 |
| Conread position: | 185-432 |
| Cow position: | chr3:62722387-62722140 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 69, 50 |
Show alignments to all cow chromosomes.