Cow genome map
| Conread name: | Ss1.1-Emb1-C0005190_O01.5 |
| Conread position: | 1-203 |
| Cow position: | chr7:1015197-1015399 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 1-285 |
| Cow position: | chr7:18390504-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-289 |
| Cow position: | chr7:8325831-8326119 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 1-336 |
| Cow position: | chr7:11600761-11600425 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 324, 0 |
| Conread position: | 1-347 |
| Cow position: | chr7:8278022-8278368 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 1-366 |
| Cow position: | chr7:8277686-8278051 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 1-368 |
| Cow position: | chr7:8243560-8243927 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 1-368 |
| Cow position: | chr7:8277434-8277801 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 1-369 |
| Cow position: | chr7:8325327-8325695 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 1-372 |
| Cow position: | chr7:8243225-8243595 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 1-372 |
| Cow position: | chr7:8325747-8326118 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 1-420 |
| Cow position: | chr7:42878682-42878262 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 382 |
| Conread position: | 1-421 |
| Cow position: | chr7:3180375-3180795 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 142 |
| Conread position: | 1-422 |
| Cow position: | chr7:1014861-1015282 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 133 |
| Conread position: | 1-424 |
| Cow position: | chr7:42878934-42878511 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 382 |
| Conread position: | 1-425 |
| Cow position: | chr7:3179871-3180295 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 209 |
| Conread position: | 1-425 |
| Cow position: | chr7:3180123-3180547 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 391 |
| Conread position: | 1-425 |
| Cow position: | chr7:3180291-3180715 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 384 |
| Conread position: | 1-425 |
| Cow position: | chr7:8243057-8243480 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 121, 131 |
| Conread position: | 1-425 |
| Cow position: | chr7:8324739-8325163 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 140, 120 |
| Conread position: | 1-425 |
| Cow position: | chr7:8325159-8325583 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 1-425 |
| Cow position: | chr7:8325411-8325835 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 1-425 |
| Cow position: | chr7:18390336-18390760 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 1-425 |
| Cow position: | chr7:42878850-42878426 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-425 |
| Cow position: | chr7:42879102-42878678 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-431 |
| Cow position: | chr7:8243392-8243822 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 1-431 |
| Cow position: | chr7:8324991-8325421 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 1-431 |
| Cow position: | chr7:11601097-11600667 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 372 |
| Conread position: | 1-431 |
| Cow position: | chr7:42878766-42878336 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 382 |
| Conread position: | 1-431 |
| Cow position: | chr7:42879186-42878756 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 373 |
| Conread position: | 1-432 |
| Cow position: | chr7:8277854-8278285 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 1-432 |
| Cow position: | chr7:11601013-11600582 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 271 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr7:42879018-42878587 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-369 |
| Cow position: | chr7:1439898-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-425 |
| Cow position: | chr7:3179705-3180127 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 369 |
| Conread position: | 9-425 |
| Cow position: | chr7:1014953-1015369 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 376 |
| Conread position: | 9-425 |
| Cow position: | chr7:3180215-3180631 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 357 |
| Conread position: | 10-289 |
| Cow position: | chr7:8243821-8244097 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 10-368 |
| Cow position: | chr7:11600836-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-370 |
| Cow position: | chr7:8324832-8325192 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 10-371 |
| Cow position: | chr7:1015122-1015485 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 119, 103 |
| Conread position: | 10-424 |
| Cow position: | chr7:1014372-1014780 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 382, 285 |
| Conread position: | 10-424 |
| Cow position: | chr7:1438098-1438510 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 193, 103 |
| Conread position: | 10-424 |
| Cow position: | chr7:3179796-3180210 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-425 |
| Cow position: | chr7:1014702-1015117 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 358 |
| Conread position: | 10-425 |
| Cow position: | chr7:1014786-1015201 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 375 |
| Conread position: | 10-425 |
| Cow position: | chr7:1439485-1439901 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 282 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 10-425 |
| Cow position: | chr7:1439823-1440236 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 10-425 |
| Cow position: | chr7:3180048-3180463 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 373 |
| Conread position: | 10-425 |
| Cow position: | chr7:8277527-8277942 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 123, 117 |
| Conread position: | 10-425 |
| Cow position: | chr7:8324916-8325331 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 10-425 |
| Cow position: | chr7:11434801-11434393 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 125, 111 |
| Conread position: | 10-426 |
| Cow position: | chr7:1014456-1014866 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 364, 201 |
| Conread position: | 10-431 |
| Cow position: | chr7:3179964-3180385 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 362 |
| Conread position: | 10-431 |
| Cow position: | chr7:42879261-42878840 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 373 |
| Conread position: | 10-432 |
| Cow position: | chr7:11601172-11600750 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 365, 375 |
| Conread position: | 11-431 |
| Cow position: | chr7:18390010-18390430 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 112, 126 |
| Conread position: | 15-431 |
| Cow position: | chr7:42879424-42879008 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 43 |
| Conread position: | 16-303 |
| Cow position: | chr7:1438438-1438724 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 283, 0 |
| Conread position: | 16-368 |
| Cow position: | chr7:18390435-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 16-425 |
| Cow position: | chr7:8277365-8277774 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 16-425 |
| Cow position: | chr7:18390267-18390676 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 369 |
| Conread position: | 16-431 |
| Cow position: | chr7:1439746-1440158 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 53, 15 |
| Conread position: | 17-369 |
| Cow position: | chr7:1438355-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-421 |
| Cow position: | chr7:8325679-8326083 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 18-339 |
| Cow position: | chr7:1014296-1014617 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-368 |
| Cow position: | chr7:1015047-1015396 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 183 |
| Conread position: | 19-431 |
| Cow position: | chr7:18390186-18390598 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 355, 366 |
| Conread position: | 56-288 |
| Cow position: | chr7:11434510-11434278 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 109 |
| Conread position: | 57-425 |
| Cow position: | chr7:11600873-11600505 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 317 |
| Conread position: | 58-425 |
| Cow position: | chr7:1438312-1438679 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 139, 151 |
| Conread position: | 58-425 |
| Cow position: | chr7:8325636-8326003 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 74, 61 |
| Conread position: | 70-407 |
| Cow position: | chr7:1439461-1439800 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 216, 138 |
| Conread position: | 70-431 |
| Cow position: | chr7:8278175-8278534 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 72, 59 |
| Conread position: | 71-431 |
| Cow position: | chr7:18390154-18390514 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 114 |
| Conread position: | 74-419 |
| Cow position: | chr7:11601193-11600847 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 82-425 |
| Cow position: | chr7:8324736-8325079 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 152, 124 |
| Conread position: | 82-425 |
| Cow position: | chr7:42879273-42878930 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 304 |
| Conread position: | 86-422 |
| Cow position: | chr7:1014694-1015030 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-431 |
| Cow position: | chr7:3179712-3180049 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 297, 279 |
| Conread position: | 141-425 |
| Cow position: | chr7:11601209-11600925 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 250, 233 |
| Conread position: | 142-368 |
| Cow position: | chr7:11434508-11434282 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 161, 146 |
| Conread position: | 144-421 |
| Cow position: | chr7:1014668-1014945 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 64 |
| Conread position: | 157-368 |
| Cow position: | chr7:1014267-1014478 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.