Cow genome map
| Conread name: | Ss1.1-Emb1-C0005190_O01.5 |
| Conread position: | 1-333 |
| Cow position: | chr8:46817059-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-358 |
| Cow position: | chr8:48406616-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 289, 299 |
| Conread position: | 1-358 |
| Cow position: | chr8:55581416-55581773 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 334, 353 |
| Conread position: | 1-405 |
| Cow position: | chr8:45201696-45202093 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 393, 294 |
| Conread position: | 1-422 |
| Cow position: | chr8:48407540-48407119 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 201 |
| Conread position: | 1-424 |
| Cow position: | chr8:48407456-48407033 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 383 |
| Conread position: | 1-425 |
| Cow position: | chr8:45201192-45201616 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 382 |
| Conread position: | 1-425 |
| Cow position: | chr8:46816219-46816643 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 384 |
| Conread position: | 1-425 |
| Cow position: | chr8:46816639-46817063 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-425 |
| Cow position: | chr8:55580912-55581336 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 376 |
| Conread position: | 1-425 |
| Cow position: | chr8:55581164-55581588 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 384 |
| Conread position: | 1-431 |
| Cow position: | chr8:46816807-46817237 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr8:46816135-46816566 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr8:46816723-46817154 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 361 |
| Conread position: | 1-432 |
| Cow position: | chr8:48406952-48406521 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 3-431 |
| Cow position: | chr8:46816557-46816985 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 391 |
| Conread position: | 3-432 |
| Cow position: | chr8:46816977-46817407 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 0 |
| Conread position: | 9-427 |
| Cow position: | chr8:48407028-48406610 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 10-395 |
| Cow position: | chr8:45201621-45202006 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-407 |
| Cow position: | chr8:55581341-55581738 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 10-413 |
| Cow position: | chr8:55581257-55581660 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 126, 111 |
| Conread position: | 10-414 |
| Cow position: | chr8:45201537-45201941 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 349 |
| Conread position: | 10-420 |
| Cow position: | chr8:48406691-48406281 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 264 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 353, 339 |
| Conread position: | 10-422 |
| Cow position: | chr8:46815889-46816304 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 138 |
| Conread position: | 10-422 |
| Cow position: | chr8:48407279-48406867 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 197 |
| Conread position: | 10-425 |
| Cow position: | chr8:45200949-45201364 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 349 |
| Conread position: | 10-425 |
| Cow position: | chr8:45201033-45201448 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 352 |
| Conread position: | 10-425 |
| Cow position: | chr8:45201285-45201700 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 373 |
| Conread position: | 10-425 |
| Cow position: | chr8:45201369-45201784 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 355 |
| Conread position: | 10-425 |
| Cow position: | chr8:46816480-46816895 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 349 |
| Conread position: | 10-425 |
| Cow position: | chr8:46816900-46817315 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 360 |
| Conread position: | 10-425 |
| Cow position: | chr8:48407111-48406696 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 268 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 10-425 |
| Cow position: | chr8:48407195-48406780 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 114 |
| Conread position: | 10-425 |
| Cow position: | chr8:55580837-55581252 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 10-425 |
| Cow position: | chr8:55581089-55581504 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 279 |
| Conread position: | 10-426 |
| Cow position: | chr8:46816396-46816812 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 355 |
| Conread position: | 10-431 |
| Cow position: | chr8:45201453-45201874 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 373 |
| Conread position: | 10-431 |
| Cow position: | chr8:55581005-55581426 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 375 |
| Conread position: | 10-432 |
| Cow position: | chr8:46816060-46816482 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 259 |
| Conread position: | 13-425 |
| Cow position: | chr8:46815979-46816391 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 361 |
| Conread position: | 15-424 |
| Cow position: | chr8:45200786-45201195 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 16-425 |
| Cow position: | chr8:6958059-6957651 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 366, 272 |
| Conread position: | 16-431 |
| Cow position: | chr8:48407609-48407194 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-432 |
| Cow position: | chr8:46816318-46816734 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 352 |
| Conread position: | 18-425 |
| Cow position: | chr8:45201125-45201532 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 365 |
| Conread position: | 36-422 |
| Cow position: | chr8:45200891-45201277 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 347 |
| Conread position: | 51-422 |
| Cow position: | chr8:48407658-48407287 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 74, 58 |
| Conread position: | 53-431 |
| Cow position: | chr8:48406732-48406354 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 342, 338 |
| Conread position: | 58-432 |
| Cow position: | chr8:48407315-48406941 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 145 |
| Conread position: | 62-431 |
| Cow position: | chr8:55580805-55581174 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 70-432 |
| Cow position: | chr8:46815865-46816230 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 103-426 |
| Cow position: | chr8:6958056-6957734 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 107-432 |
| Cow position: | chr8:45200793-45201119 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 12, 260 |
| Conread position: | 135-431 |
| Cow position: | chr8:48407658-48407362 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 260, 239 |
| Conread position: | 268-431 |
| Cow position: | chr8:6958059-6957896 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 124, 107 |
Show alignments to all cow chromosomes.