Cow genome map
| Conread name: | Ss1.1-Emb1-C0005190_O01.5 |
| Conread position: | 1-228 |
| Cow position: | chrX:29045653-29045426 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-266 |
| Cow position: | chrX:25310316-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-421 |
| Cow position: | chrX:25324657-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 367 |
| Conread position: | 1-424 |
| Cow position: | chrX:25310148-25310571 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 132 |
| Conread position: | 1-425 |
| Cow position: | chrX:25309980-25310404 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 300 |
| Conread position: | 1-425 |
| Cow position: | chrX:25310064-25310488 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 204 |
| Conread position: | 1-425 |
| Cow position: | chrX:25324741-25324317 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 365 |
| Conread position: | 1-425 |
| Cow position: | chrX:25325077-25324653 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-425 |
| Cow position: | chrX:25325413-25324989 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 374 |
| Conread position: | 1-425 |
| Cow position: | chrX:29045086-29044662 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 373 |
| Conread position: | 1-426 |
| Cow position: | chrX:25325161-25324736 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 385 |
| Conread position: | 1-431 |
| Cow position: | chrX:13826690-13826260 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 3-432 |
| Cow position: | chrX:29045252-29044823 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 376 |
| Conread position: | 10-335 |
| Cow position: | chrX:29045728-29045405 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 273, 292 |
| Conread position: | 10-346 |
| Cow position: | chrX:29044993-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-350 |
| Cow position: | chrX:25310241-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 39 |
| Conread position: | 10-368 |
| Cow position: | chrX:13826765-13826407 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 10-421 |
| Cow position: | chrX:25325740-25325329 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-425 |
| Cow position: | chrX:12627537-12627951 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 10-425 |
| Cow position: | chrX:25309737-25310152 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 364 |
| Conread position: | 10-425 |
| Cow position: | chrX:25309821-25310236 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 10-425 |
| Cow position: | chrX:25324900-25324485 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 349 |
| Conread position: | 10-425 |
| Cow position: | chrX:25325488-25325073 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 384 |
| Conread position: | 10-431 |
| Cow position: | chrX:25309905-25310326 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 355 |
| Conread position: | 10-431 |
| Cow position: | chrX:29045329-29044908 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 10-432 |
| Cow position: | chrX:13826849-13826427 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 125, 99 |
| Conread position: | 10-432 |
| Cow position: | chrX:25324816-25324394 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 258 |
| Conread position: | 10-432 |
| Cow position: | chrX:25325236-25324814 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 373 |
| Conread position: | 10-432 |
| Cow position: | chrX:25325320-25324898 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 352 |
| Conread position: | 10-432 |
| Cow position: | chrX:25325572-25325150 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 199 |
| Conread position: | 10-432 |
| Cow position: | chrX:29045161-29044739 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 376 |
| Conread position: | 12-407 |
| Cow position: | chrX:29045810-29045415 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 16-422 |
| Cow position: | chrX:25324978-25324572 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 367 |
| Conread position: | 19-426 |
| Cow position: | chrX:13826924-13826517 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 21-425 |
| Cow position: | chrX:25325645-25325241 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 57-432 |
| Cow position: | chrX:25325777-25325402 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 328, 314 |
| Conread position: | 65-425 |
| Cow position: | chrX:25309708-25310068 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 320 |
| Conread position: | 66-422 |
| Cow position: | chrX:29045840-29045484 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 70-374 |
| Cow position: | chrX:12627346-12627649 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 94-432 |
| Cow position: | chrX:29045329-29044991 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 137-425 |
| Cow position: | chrX:25309696-25309984 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-432 |
| Cow position: | chrX:29045837-29045558 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 236, 214 |
Show alignments to all cow chromosomes.