Cow genome map
| Conread name: | Ss1.1-Emb1-C0005193_I07.5 |
| Conread position: | 15-448 |
| Cow position: | chr14:447434-447870 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 0 |
| Conread position: | 65-414 |
| Cow position: | chr14:25895765-25896116 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 68-408 |
| Cow position: | chr14:3061087-3060745 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 275, 296 |
| Conread position: | 75-414 |
| Cow position: | chr14:3080774-3080432 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 76-414 |
| Cow position: | chr14:433800-434140 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 238, 244 |
| Conread position: | 87-448 |
| Cow position: | chr14:447758-448122 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 233 |
| Conread position: | 90-378 |
| Cow position: | chr14:3061401-3061111 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 90-404 |
| Cow position: | chr14:680731-681047 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 247, 0 |
| Conread position: | 92-404 |
| Cow position: | chr14:680649-680963 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 92-414 |
| Cow position: | chr14:680313-680637 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 245, 0 |
| Conread position: | 92-414 |
| Cow position: | chr14:3061651-3061327 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 92-414 |
| Cow position: | chr14:3080504-3080180 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 8, 12 |
| Conread position: | 93-343 |
| Cow position: | chr14:434153-434405 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 93-376 |
| Cow position: | chr14:3127931-3127646 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 93-377 |
| Cow position: | chr14:3100996-3100712 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 93-379 |
| Cow position: | chr14:25895289-25895577 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 224, 209 |
| Conread position: | 93-404 |
| Cow position: | chr14:3080167-3079854 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 93-404 |
| Cow position: | chr14:25895373-25895686 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 143, 124 |
| Conread position: | 93-409 |
| Cow position: | chr14:433985-434303 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 246, 0 |
| Conread position: | 93-414 |
| Cow position: | chr14:3080251-3079928 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 227 |
| Conread position: | 93-414 |
| Cow position: | chr14:3080671-3080348 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 93-414 |
| Cow position: | chr14:3155500-3155823 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 93-414 |
| Cow position: | chr14:3156157-3156480 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 241, 0 |
| Conread position: | 93-425 |
| Cow position: | chr14:434069-434403 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 0 |
| Conread position: | 93-427 |
| Cow position: | chr14:3127763-3127429 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 244, 295 |
| Conread position: | 94-376 |
| Cow position: | chr14:25895878-25896162 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 218, 225 |
| Conread position: | 94-409 |
| Cow position: | chr14:3155417-3155734 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 129, 141 |
| Conread position: | 103-404 |
| Cow position: | chr14:3080997-3080694 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 105, 99 |
| Conread position: | 112-402 |
| Cow position: | chr14:420587-420877 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 225, 48 |
| Conread position: | 112-408 |
| Cow position: | chr14:433920-434218 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 112-414 |
| Cow position: | chr14:3080316-3080012 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 121-448 |
| Cow position: | chr14:680174-680504 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 136-414 |
| Cow position: | chr14:3061523-3061243 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 201, 259 |
| Conread position: | 144-432 |
| Cow position: | chr14:3060927-3060637 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 91, 80 |
| Conread position: | 144-448 |
| Cow position: | chr14:3155383-3155690 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 82, 92 |
| Conread position: | 145-448 |
| Cow position: | chr14:3128131-3127825 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 146-383 |
| Cow position: | chr14:3061093-3060854 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 146-402 |
| Cow position: | chr14:3127962-3127704 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 146-404 |
| Cow position: | chr14:3061429-3061169 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 146-408 |
| Cow position: | chr14:3061681-3061417 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 169, 174 |
| Conread position: | 147-386 |
| Cow position: | chr14:3080533-3080292 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 190, 209 |
| Conread position: | 147-414 |
| Cow position: | chr14:3128212-3127944 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 5 |
| Conread position: | 148-414 |
| Cow position: | chr14:3100859-3100591 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 148-415 |
| Cow position: | chr14:3080784-3080515 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 149-335 |
| Cow position: | chr14:3079859-3079673 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 149-341 |
| Cow position: | chr14:681042-681234 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 164, 171 |
| Conread position: | 149-341 |
| Cow position: | chr14:3100606-3100414 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 149-383 |
| Cow position: | chr14:663340-663104 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 64 |
| Conread position: | 149-404 |
| Cow position: | chr14:680874-681131 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 149-414 |
| Cow position: | chr14:3080027-3079760 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 149-414 |
| Cow position: | chr14:3080867-3080600 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 149-414 |
| Cow position: | chr14:3127539-3127272 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 167, 171 |
| Conread position: | 149-415 |
| Cow position: | chr14:3155961-3156229 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 85 |
| Conread position: | 149-431 |
| Cow position: | chr14:3061174-3060890 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 149-448 |
| Cow position: | chr14:3061258-3060956 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 149-448 |
| Cow position: | chr14:3080363-3080061 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 167, 171 |
| Conread position: | 149-448 |
| Cow position: | chr14:3156129-3156431 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 190, 238 |
| Conread position: | 149-465 |
| Cow position: | chr14:447988-448305 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 87 |
| Conread position: | 150-393 |
| Cow position: | chr14:25877559-25877804 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 85, 67 |
| Conread position: | 150-414 |
| Cow position: | chr14:25836783-25837049 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 86, 76 |
| Conread position: | 150-429 |
| Cow position: | chr14:680539-680820 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 151-335 |
| Cow position: | chr14:3156299-3156483 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-341 |
| Cow position: | chr14:3155642-3155832 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 66, 70 |
| Conread position: | 151-342 |
| Cow position: | chr14:25896103-25896294 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 75, 81 |
| Conread position: | 151-373 |
| Cow position: | chr14:3127453-3127233 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 169, 162 |
| Conread position: | 151-376 |
| Cow position: | chr14:25877392-25877619 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 151-376 |
| Cow position: | chr14:25895179-25895406 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 151-376 |
| Cow position: | chr14:25895599-25895826 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 151-400 |
| Cow position: | chr14:25895263-25895512 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 172, 231 |
| Conread position: | 151-404 |
| Cow position: | chr14:680960-681215 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 192, 203 |
| Conread position: | 151-409 |
| Cow position: | chr14:3128041-3127781 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 151-414 |
| Cow position: | chr14:3156047-3156312 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 151-414 |
| Cow position: | chr14:25895095-25895360 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 151-414 |
| Cow position: | chr14:25895515-25895780 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 151-430 |
| Cow position: | chr14:3079941-3079660 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 151-431 |
| Cow position: | chr14:680456-680738 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 188, 203 |
| Conread position: | 151-431 |
| Cow position: | chr14:25894927-25895209 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 151-431 |
| Cow position: | chr14:25910896-25911178 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 75 |
| Conread position: | 151-448 |
| Cow position: | chr14:25836196-25836496 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 155-402 |
| Cow position: | chr14:438348-438595 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 159, 28 |
| Conread position: | 160-376 |
| Cow position: | chr14:25836709-25836927 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 53 |
| Conread position: | 161-376 |
| Cow position: | chr14:25877486-25877703 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 158, 141 |
| Conread position: | 162-414 |
| Cow position: | chr14:3127778-3127524 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 169-402 |
| Cow position: | chr14:3061742-3061507 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 170, 0 |
Show alignments to all cow chromosomes.