Cow genome map
| Conread name: | Ss1.1-Emb1-C0005193_O22.5 |
| Conread position: | 516-667 |
| Cow position: | chr12:18943956-18943805 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 532-669 |
| Cow position: | chr12:34148648-34148506 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 540-667 |
| Cow position: | chr12:25805399-25805269 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 541-667 |
| Cow position: | chr12:46143533-46143662 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 541-669 |
| Cow position: | chr12:15938555-15938431 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 82 |
| Conread position: | 542-669 |
| Cow position: | chr12:27563123-27562991 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 82 |
| Conread position: | 542-672 |
| Cow position: | chr12:9482585-9482452 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 69, 83 |
| Conread position: | 545-669 |
| Cow position: | chr12:29995745-29995617 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 546-667 |
| Cow position: | chr12:18577568-18577687 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 546-667 |
| Cow position: | chr12:19502702-19502575 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 546-667 |
| Cow position: | chr12:22124731-22124853 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 14 |
| Conread position: | 546-667 |
| Cow position: | chr12:22132259-22132137 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 97, 14 |
| Conread position: | 546-669 |
| Cow position: | chr12:4134383-4134513 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 546-669 |
| Cow position: | chr12:12017594-12017721 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 78 |
| Conread position: | 546-669 |
| Cow position: | chr12:23154748-23154621 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 546-669 |
| Cow position: | chr12:29411770-29411646 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 546-669 |
| Cow position: | chr12:29969293-29969423 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 546-669 |
| Cow position: | chr12:30919150-30919263 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 546-670 |
| Cow position: | chr12:17716801-17716924 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 82 |
| Conread position: | 548-662 |
| Cow position: | chr12:10895828-10895710 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-664 |
| Cow position: | chr12:17486417-17486299 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-667 |
| Cow position: | chr12:1284738-1284620 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-667 |
| Cow position: | chr12:8943500-8943378 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 548-667 |
| Cow position: | chr12:19039891-19039770 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 12 |
| Conread position: | 548-667 |
| Cow position: | chr12:35368363-35368482 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 79 |
| Conread position: | 548-667 |
| Cow position: | chr12:42698504-42698382 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 77 |
| Conread position: | 548-668 |
| Cow position: | chr12:6210437-6210315 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 97, 79 |
| Conread position: | 548-668 |
| Cow position: | chr12:14132024-14131898 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 90, 76 |
| Conread position: | 548-668 |
| Cow position: | chr12:25529750-25529876 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-668 |
| Cow position: | chr12:27803329-27803204 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 548-668 |
| Cow position: | chr12:29119619-29119741 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 76 |
| Conread position: | 548-668 |
| Cow position: | chr12:32391565-32391691 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-669 |
| Cow position: | chr12:2711212-2711335 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-669 |
| Cow position: | chr12:3600176-3600053 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-669 |
| Cow position: | chr12:3950631-3950504 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 548-669 |
| Cow position: | chr12:5134859-5134987 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 548-669 |
| Cow position: | chr12:5714349-5714471 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 548-669 |
| Cow position: | chr12:5905777-5905898 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 76 |
| Conread position: | 548-669 |
| Cow position: | chr12:6241029-6241156 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 90, 76 |
| Conread position: | 548-669 |
| Cow position: | chr12:6411008-6410889 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 548-669 |
| Cow position: | chr12:7108908-7109031 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-669 |
| Cow position: | chr12:8869163-8869034 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 54, 79 |
| Conread position: | 548-669 |
| Cow position: | chr12:9914509-9914630 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 548-669 |
| Cow position: | chr12:17495472-17495349 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 76 |
| Conread position: | 548-669 |
| Cow position: | chr12:18123407-18123529 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 548-669 |
| Cow position: | chr12:18388562-18388439 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 76 |
| Conread position: | 548-669 |
| Cow position: | chr12:18937107-18937234 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 91, 76 |
| Conread position: | 548-669 |
| Cow position: | chr12:25320643-25320765 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 548-669 |
| Cow position: | chr12:25561090-25561215 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 79 |
| Conread position: | 548-669 |
| Cow position: | chr12:26777432-26777313 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 12 |
| Conread position: | 548-669 |
| Cow position: | chr12:26869076-26868952 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 548-669 |
| Cow position: | chr12:30170387-30170511 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr12:30437971-30438088 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 548-669 |
| Cow position: | chr12:34385794-34385671 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 548-669 |
| Cow position: | chr12:36501233-36501107 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 74 |
| Conread position: | 548-669 |
| Cow position: | chr12:40307416-40307541 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 548-669 |
| Cow position: | chr12:40910570-40910446 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 88, 15 |
| Conread position: | 548-669 |
| Cow position: | chr12:42966721-42966843 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 548-669 |
| Cow position: | chr12:44905357-44905487 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 548-670 |
| Cow position: | chr12:12178641-12178766 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-670 |
| Cow position: | chr12:19865962-19866080 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 548-670 |
| Cow position: | chr12:28011179-28011055 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-670 |
| Cow position: | chr12:36954655-36954531 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-674 |
| Cow position: | chr12:40270366-40270246 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 548-678 |
| Cow position: | chr12:3055856-3055993 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 77 |
| Conread position: | 548-678 |
| Cow position: | chr12:9229762-9229630 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 548-678 |
| Cow position: | chr12:20316786-20316659 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 548-678 |
| Cow position: | chr12:26782601-26782737 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 89, 76 |
| Conread position: | 548-678 |
| Cow position: | chr12:31925370-31925502 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-684 |
| Cow position: | chr12:16359594-16359731 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 76, 122 |
| Conread position: | 549-669 |
| Cow position: | chr12:2242164-2242047 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 549-669 |
| Cow position: | chr12:29484170-29484047 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 80 |
| Conread position: | 549-678 |
| Cow position: | chr12:8487609-8487477 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 88, 75 |
| Conread position: | 550-667 |
| Cow position: | chr12:37123235-37123353 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 96, 44 |
| Conread position: | 550-669 |
| Cow position: | chr12:4341998-4341880 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 550-670 |
| Cow position: | chr12:40110111-40110229 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 551-670 |
| Cow position: | chr12:11109492-11109608 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 552-667 |
| Cow position: | chr12:30662226-30662108 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 76 |
| Conread position: | 554-668 |
| Cow position: | chr12:20283636-20283751 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 91, 70 |
| Conread position: | 554-669 |
| Cow position: | chr12:18572367-18572484 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 70 |
| Conread position: | 555-669 |
| Cow position: | chr12:35218678-35218563 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 68 |
| Conread position: | 555-669 |
| Cow position: | chr12:39486156-39486276 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 556-678 |
| Cow position: | chr12:4866542-4866666 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 68 |
| Conread position: | 556-678 |
| Cow position: | chr12:33297574-33297699 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 557-669 |
| Cow position: | chr12:8710560-8710669 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.