Cow genome map

Conread name: Ss1.1-Emb1-C0005193_O22.5

Conread position: 521-670
Cow position: chr16:45046357-45046510 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 108

Conread position: 540-669
Cow position: chr16:11615479-11615351 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 76

Conread position: 540-669
Cow position: chr16:16424855-16424722 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 540-669
Cow position: chr16:54227974-54227843 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 80, 7

Conread position: 540-678
Cow position: chr16:26610383-26610528 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 97, 0

Conread position: 541-669
Cow position: chr16:13307113-13306982 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 8, 30

Conread position: 541-669
Cow position: chr16:14242125-14242253 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 5, 88

Conread position: 541-669
Cow position: chr16:33777569-33777699 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 110
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 8, 60

Conread position: 541-670
Cow position: chr16:31558642-31558774 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 8, 71

Conread position: 542-669
Cow position: chr16:29608269-29608400 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 544-669
Cow position: chr16:30096376-30096249 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 102, 83

Conread position: 544-669
Cow position: chr16:40333571-40333440 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 95, 80

Conread position: 546-665
Cow position: chr16:590153-590039 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 546-666
Cow position: chr16:17745590-17745713 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 107
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 15, 79

Conread position: 546-666
Cow position: chr16:18678953-18679075 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 99, 78

Conread position: 546-669
Cow position: chr16:18354195-18354071 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 14

Conread position: 546-669
Cow position: chr16:26649877-26649748 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 92, 14

Conread position: 546-669
Cow position: chr16:41590536-41590656 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 546-670
Cow position: chr16:46552575-46552693 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 546-678
Cow position: chr16:8522631-8522505 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 547-647
Cow position: chr16:11082697-11082797 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 89
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 77, 27

Conread position: 547-669
Cow position: chr16:3614505-3614628 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 87, 77

Conread position: 548-651
Cow position: chr16:15960536-15960433 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 96, 12

Conread position: 548-651
Cow position: chr16:53613057-53613158 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 548-661
Cow position: chr16:33405999-33405884 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 79

Conread position: 548-664
Cow position: chr16:22052204-22052316 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 548-668
Cow position: chr16:44973254-44973375 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 98, 46

Conread position: 548-669
Cow position: chr16:571158-571032 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 90, 12

Conread position: 548-669
Cow position: chr16:4972267-4972140 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 548-669
Cow position: chr16:5293421-5293545 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 84, 12

Conread position: 548-669
Cow position: chr16:5845430-5845551 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 12

Conread position: 548-669
Cow position: chr16:7619438-7619316 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 73

Conread position: 548-669
Cow position: chr16:8807332-8807210 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 71

Conread position: 548-669
Cow position: chr16:8933661-8933545 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 548-669
Cow position: chr16:11100037-11099916 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 13

Conread position: 548-669
Cow position: chr16:13969621-13969499 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 76

Conread position: 548-669
Cow position: chr16:14721984-14721865 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 548-669
Cow position: chr16:14754564-14754441 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 97, 76

Conread position: 548-669
Cow position: chr16:16096497-16096617 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 13

Conread position: 548-669
Cow position: chr16:16932755-16932877 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 18, 77

Conread position: 548-669
Cow position: chr16:18141571-18141456 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 548-669
Cow position: chr16:18205729-18205842 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 548-669
Cow position: chr16:18693372-18693251 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 91, 12

Conread position: 548-669
Cow position: chr16:24228592-24228469 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 76

Conread position: 548-669
Cow position: chr16:24672601-24672476 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 90, 12

Conread position: 548-669
Cow position: chr16:26373193-26373073 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 105
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 548-669
Cow position: chr16:28191825-28191951 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 82, 76

Conread position: 548-669
Cow position: chr16:29066926-29067049 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 98, 79

Conread position: 548-669
Cow position: chr16:29557873-29557746 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 548-669
Cow position: chr16:30715250-30715377 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 90, 79

Conread position: 548-669
Cow position: chr16:30909173-30909046 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 96, 76

Conread position: 548-669
Cow position: chr16:30939492-30939614 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 98, 17

Conread position: 548-669
Cow position: chr16:38905468-38905348 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 79, 0

Conread position: 548-669
Cow position: chr16:41037442-41037568 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 548-669
Cow position: chr16:43152947-43152828 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 548-669
Cow position: chr16:43275780-43275903 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 94, 76

Conread position: 548-669
Cow position: chr16:43804255-43804378 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 98, 72

Conread position: 548-669
Cow position: chr16:47662471-47662593 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 93, 76

Conread position: 548-669
Cow position: chr16:47820329-47820455 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 72, 80

Conread position: 548-669
Cow position: chr16:48398487-48398370 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 103, 12

Conread position: 548-669
Cow position: chr16:48494798-48494672 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 88, 79

Conread position: 548-669
Cow position: chr16:49126425-49126304 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 93, 12

Conread position: 548-669
Cow position: chr16:49169624-49169504 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 93, 6

Conread position: 548-669
Cow position: chr16:52889652-52889527 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 82, 75

Conread position: 548-669
Cow position: chr16:53627665-53627546 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 76

Conread position: 548-669
Cow position: chr16:53813901-53813778 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 76

Conread position: 548-670
Cow position: chr16:4910773-4910649 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 98, 76

Conread position: 548-670
Cow position: chr16:32132287-32132407 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 96, 12

Conread position: 548-670
Cow position: chr16:33751956-33752078 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 67, 77

Conread position: 548-670
Cow position: chr16:41654044-41654170 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 77

Conread position: 548-674
Cow position: chr16:47336488-47336616 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 98, 76

Conread position: 548-675
Cow position: chr16:55683051-55683183 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 548-678
Cow position: chr16:9728962-9729094 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 89, 76

Conread position: 548-678
Cow position: chr16:21450606-21450734 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 548-678
Cow position: chr16:29380012-29380144 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 97, 76

Conread position: 548-678
Cow position: chr16:34168353-34168485 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 87, 76

Conread position: 548-678
Cow position: chr16:43724549-43724681 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 87, 32

Conread position: 548-680
Cow position: chr16:15320711-15320574 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 86, 36

Conread position: 548-681
Cow position: chr16:51399988-51399851 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 98, 79

Conread position: 548-684
Cow position: chr16:30143454-30143313 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 12

Conread position: 549-668
Cow position: chr16:33507822-33507947 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 549-669
Cow position: chr16:4059118-4059236 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 549-669
Cow position: chr16:8280030-8279905 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 549-669
Cow position: chr16:31978429-31978306 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 75

Conread position: 549-678
Cow position: chr16:42970172-42970038 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 87, 75

Conread position: 550-669
Cow position: chr16:22868414-22868294 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 96, 10

Conread position: 550-669
Cow position: chr16:30311349-30311229 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 69

Conread position: 550-669
Cow position: chr16:51598842-51598724 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 87, 10

Conread position: 551-669
Cow position: chr16:40561987-40562112 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 7, 74

Conread position: 551-669
Cow position: chr16:49141797-49141683 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 551-670
Cow position: chr16:45603440-45603558 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 551-677
Cow position: chr16:32327413-32327541 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 73

Conread position: 552-669
Cow position: chr16:820013-820129 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 106
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 75, 0

Conread position: 552-669
Cow position: chr16:10040076-10039958 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 89, 72

Conread position: 552-669
Cow position: chr16:47620142-47620262 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 552-669
Cow position: chr16:49230006-49229890 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 82

Conread position: 554-666
Cow position: chr16:13791277-13791395 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 554-668
Cow position: chr16:45534947-45535060 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 91, 59

Conread position: 554-669
Cow position: chr16:11775286-11775169 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 92, 70

Conread position: 554-669
Cow position: chr16:23472515-23472628 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 90, 70

Conread position: 555-667
Cow position: chr16:53086560-53086450 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 89, 60

Conread position: 555-669
Cow position: chr16:4103392-4103277 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 87, 35

Conread position: 555-669
Cow position: chr16:7665396-7665516 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 556-678
Cow position: chr16:39695711-39695584 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 81, 68

Conread position: 557-669
Cow position: chr16:26676923-26676808 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 69, 0

Show alignments to all cow chromosomes.