Cow genome map

Conread name: Ss1.1-Emb1-C0005193_O22.5

Conread position: 507-669
Cow position: chr18:30794118-30794283 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 34

Conread position: 535-669
Cow position: chr18:18976799-18976937 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 86, 12

Conread position: 538-669
Cow position: chr18:81474-81606 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 9

Conread position: 541-659
Cow position: chr18:4556667-4556550 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 8, 85

Conread position: 541-669
Cow position: chr18:35076105-35076234 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 8, 24

Conread position: 541-669
Cow position: chr18:55789274-55789141 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 543-669
Cow position: chr18:24342346-24342469 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 37, 82

Conread position: 544-678
Cow position: chr18:33606354-33606486 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 100, 80

Conread position: 546-666
Cow position: chr18:20271296-20271174 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 102, 77

Conread position: 546-667
Cow position: chr18:15881133-15881011 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 99, 81

Conread position: 546-669
Cow position: chr18:2569524-2569653 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 111
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 546-669
Cow position: chr18:11811703-11811825 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 95, 39

Conread position: 546-669
Cow position: chr18:22121158-22121032 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 100, 0

Conread position: 546-669
Cow position: chr18:26286637-26286760 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 64, 16

Conread position: 546-669
Cow position: chr18:27388273-27388400 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 546-669
Cow position: chr18:34527378-34527250 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 97, 78

Conread position: 548-658
Cow position: chr18:18819940-18819829 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 91, 76

Conread position: 548-658
Cow position: chr18:50974851-50974745 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 94
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 548-665
Cow position: chr18:8967724-8967845 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 90, 76

Conread position: 548-667
Cow position: chr18:20864709-20864834 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 89, 76

Conread position: 548-667
Cow position: chr18:21195613-21195491 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 11, 73

Conread position: 548-667
Cow position: chr18:33157547-33157665 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 548-667
Cow position: chr18:48407515-48407640 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 78, 0

Conread position: 548-668
Cow position: chr18:2270777-2270652 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 84, 12

Conread position: 548-668
Cow position: chr18:19831023-19831140 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 548-669
Cow position: chr18:2592447-2592320 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 91, 76

Conread position: 548-669
Cow position: chr18:2609003-2608879 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 88, 75

Conread position: 548-669
Cow position: chr18:5711942-5711819 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 77

Conread position: 548-669
Cow position: chr18:7076489-7076618 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 548-669
Cow position: chr18:7359460-7359588 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 548-669
Cow position: chr18:11680446-11680573 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 548-669
Cow position: chr18:13359788-13359913 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 39

Conread position: 548-669
Cow position: chr18:14815609-14815489 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 548-669
Cow position: chr18:15025405-15025522 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 103
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 548-669
Cow position: chr18:20127376-20127254 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 97, 12

Conread position: 548-669
Cow position: chr18:25282829-25282704 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 51, 81

Conread position: 548-669
Cow position: chr18:25647523-25647403 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 93, 12

Conread position: 548-669
Cow position: chr18:38985413-38985540 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 548-669
Cow position: chr18:39875533-39875410 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 47

Conread position: 548-669
Cow position: chr18:40758942-40759063 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 96, 12

Conread position: 548-669
Cow position: chr18:45570747-45570863 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 548-669
Cow position: chr18:46135046-46135165 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 548-669
Cow position: chr18:49543204-49543324 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 104
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 548-669
Cow position: chr18:49660314-49660193 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 77

Conread position: 548-669
Cow position: chr18:50082520-50082401 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 13, 77

Conread position: 548-670
Cow position: chr18:11166705-11166829 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 96, 76

Conread position: 548-670
Cow position: chr18:36445158-36445287 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 110
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 58, 82

Conread position: 548-670
Cow position: chr18:36458660-36458781 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 548-670
Cow position: chr18:48290712-48290587 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 106
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 98, 76

Conread position: 548-672
Cow position: chr18:35636624-35636499 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 93, 79

Conread position: 548-672
Cow position: chr18:45880284-45880166 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 548-672
Cow position: chr18:51691742-51691612 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 548-673
Cow position: chr18:51712983-51712852 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 548-674
Cow position: chr18:18919227-18919105 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 65

Conread position: 548-674
Cow position: chr18:35537503-35537381 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 548-678
Cow position: chr18:3115186-3115317 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 12

Conread position: 548-678
Cow position: chr18:21721554-21721422 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 97, 75

Conread position: 548-681
Cow position: chr18:20174404-20174272 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 549-661
Cow position: chr18:12058744-12058857 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 95, 77

Conread position: 549-668
Cow position: chr18:27078576-27078693 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 549-669
Cow position: chr18:56163314-56163436 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 93, 75

Conread position: 549-684
Cow position: chr18:49161729-49161588 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 77, 0

Conread position: 550-669
Cow position: chr18:24047976-24048092 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 550-669
Cow position: chr18:39709618-39709740 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 87, 74

Conread position: 551-669
Cow position: chr18:44549178-44549066 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 551-669
Cow position: chr18:48453422-48453543 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 551-669
Cow position: chr18:50381986-50382107 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 45, 74

Conread position: 552-674
Cow position: chr18:23447352-23447229 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 92, 72

Conread position: 553-669
Cow position: chr18:28658183-28658060 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 71

Conread position: 554-674
Cow position: chr18:19761430-19761554 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 555-669
Cow position: chr18:13507999-13507890 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 557-677
Cow position: chr18:38670377-38670253 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 84, 63

Show alignments to all cow chromosomes.