Cow genome map

Conread name: Ss1.1-Emb1-C0005193_O22.5

Conread position: 530-669
Cow position: chr20:14806671-14806810 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 115, 17

Conread position: 540-667
Cow position: chr20:29844847-29844972 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 85

Conread position: 540-669
Cow position: chr20:11550158-11550290 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 86

Conread position: 540-669
Cow position: chr20:26469271-26469140 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 106, 9

Conread position: 540-678
Cow position: chr20:9014556-9014411 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 9, 88

Conread position: 541-669
Cow position: chr20:22704081-22704216 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 113
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 5, 0

Conread position: 541-669
Cow position: chr20:40511964-40511833 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 8, 20

Conread position: 544-669
Cow position: chr20:8556477-8556346 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 82, 0

Conread position: 546-665
Cow position: chr20:15593095-15593216 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 100, 78

Conread position: 546-666
Cow position: chr20:27314481-27314599 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 95, 28

Conread position: 546-669
Cow position: chr20:5998867-5998744 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 9, 80

Conread position: 546-669
Cow position: chr20:7659414-7659294 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 546-669
Cow position: chr20:22313360-22313234 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 50

Conread position: 546-669
Cow position: chr20:28067626-28067502 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 83, 14

Conread position: 546-669
Cow position: chr20:33435370-33435244 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 109
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 80

Conread position: 546-670
Cow position: chr20:35958444-35958570 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 96, 78

Conread position: 546-672
Cow position: chr20:33144756-33144628 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 100, 78

Conread position: 546-674
Cow position: chr20:39375982-39376102 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 546-679
Cow position: chr20:12441892-12441754 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 88, 23

Conread position: 546-682
Cow position: chr20:31147891-31148022 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 98, 68

Conread position: 548-646
Cow position: chr20:7806761-7806664 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 548-654
Cow position: chr20:23850085-23850193 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 96, 76

Conread position: 548-658
Cow position: chr20:382326-382214 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 94, 76

Conread position: 548-662
Cow position: chr20:34001595-34001482 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 548-666
Cow position: chr20:34776987-34777105 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 89, 76

Conread position: 548-667
Cow position: chr20:5702546-5702671 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 85, 76

Conread position: 548-667
Cow position: chr20:7426388-7426265 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 90, 75

Conread position: 548-667
Cow position: chr20:27339868-27339987 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 98, 12

Conread position: 548-668
Cow position: chr20:6096684-6096570 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 96, 42

Conread position: 548-668
Cow position: chr20:11341004-11340878 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 548-668
Cow position: chr20:12996208-12996086 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 105
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 9, 80

Conread position: 548-669
Cow position: chr20:1139972-1139852 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 104
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 548-669
Cow position: chr20:4205764-4205892 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 548-669
Cow position: chr20:4621538-4621421 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 548-669
Cow position: chr20:4781362-4781490 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 548-669
Cow position: chr20:4893096-4892977 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 548-669
Cow position: chr20:4945444-4945325 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 548-669
Cow position: chr20:7442323-7442202 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 77

Conread position: 548-669
Cow position: chr20:9379210-9379333 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 98, 76

Conread position: 548-669
Cow position: chr20:12155298-12155181 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 548-669
Cow position: chr20:12420820-12420694 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 88, 76

Conread position: 548-669
Cow position: chr20:13023677-13023554 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 98, 76

Conread position: 548-669
Cow position: chr20:13267632-13267505 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 548-669
Cow position: chr20:13752042-13752164 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 12

Conread position: 548-669
Cow position: chr20:13967457-13967336 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 96, 79

Conread position: 548-669
Cow position: chr20:14572555-14572435 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 548-669
Cow position: chr20:14735478-14735600 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 94, 12

Conread position: 548-669
Cow position: chr20:14740296-14740172 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 12

Conread position: 548-669
Cow position: chr20:15549096-15548972 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 548-669
Cow position: chr20:15761147-15761022 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 548-669
Cow position: chr20:18618440-18618560 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 93, 12

Conread position: 548-669
Cow position: chr20:20203017-20203140 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 98, 79

Conread position: 548-669
Cow position: chr20:20312936-20312822 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 548-669
Cow position: chr20:22235115-22235239 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 106
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 13, 77

Conread position: 548-669
Cow position: chr20:22445833-22445711 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 12

Conread position: 548-669
Cow position: chr20:23505630-23505753 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 93, 12

Conread position: 548-669
Cow position: chr20:23679345-23679224 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 98, 76

Conread position: 548-669
Cow position: chr20:32847153-32847280 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 77

Conread position: 548-669
Cow position: chr20:32866545-32866418 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 76

Conread position: 548-669
Cow position: chr20:33363321-33363441 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 97, 73

Conread position: 548-669
Cow position: chr20:35113332-35113459 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 108
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 89, 76

Conread position: 548-669
Cow position: chr20:38768652-38768532 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 548-670
Cow position: chr20:24521552-24521676 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 98, 76

Conread position: 548-670
Cow position: chr20:33176983-33177108 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 548-670
Cow position: chr20:39728250-39728373 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 97, 12

Conread position: 548-671
Cow position: chr20:16497046-16496930 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 548-675
Cow position: chr20:22959540-22959412 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 98, 6

Conread position: 548-678
Cow position: chr20:3599589-3599457 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 76

Conread position: 548-678
Cow position: chr20:7756828-7756696 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 97, 75

Conread position: 548-678
Cow position: chr20:12783998-12784130 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 95, 76

Conread position: 548-678
Cow position: chr20:20353113-20352984 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 91, 27

Conread position: 548-678
Cow position: chr20:38486747-38486613 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 76

Conread position: 548-684
Cow position: chr20:34251877-34251743 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 96, 74

Conread position: 548-685
Cow position: chr20:26076886-26077024 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 94, 12

Conread position: 549-667
Cow position: chr20:20739487-20739370 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 549-678
Cow position: chr20:18551165-18551299 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 90, 45

Conread position: 550-666
Cow position: chr20:5269266-5269149 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 99, 0

Conread position: 550-668
Cow position: chr20:16291274-16291397 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 75

Conread position: 550-674
Cow position: chr20:40423287-40423162 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 96, 73

Conread position: 550-678
Cow position: chr20:15582233-15582103 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 94, 74

Conread position: 551-669
Cow position: chr20:5025498-5025383 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 551-669
Cow position: chr20:34098154-34098034 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 93, 73

Conread position: 552-669
Cow position: chr20:20899041-20899155 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 552-678
Cow position: chr20:10884561-10884427 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 552-681
Cow position: chr20:13829069-13829201 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 80, 72

Conread position: 553-669
Cow position: chr20:19313259-19313137 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 553-669
Cow position: chr20:35364857-35364970 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 92, 60

Conread position: 554-669
Cow position: chr20:10200149-10200271 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 29, 78

Conread position: 554-669
Cow position: chr20:12839862-12839981 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 554-678
Cow position: chr20:6602848-6602973 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 107
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 83, 70

Conread position: 556-669
Cow position: chr20:13994618-13994737 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 101
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 70, 0

Conread position: 556-669
Cow position: chr20:14718932-14718817 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 71

Conread position: 557-669
Cow position: chr20:17251518-17251633 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 48

Conread position: 558-668
Cow position: chr20:17903971-17904083 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 88, 66

Show alignments to all cow chromosomes.