Cow genome map
| Conread name: | Ss1.1-Emb1-C0005193_O22.5 |
| Conread position: | 528-667 |
| Cow position: | chr23:16583170-16583034 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 538-669 |
| Cow position: | chr23:4338855-4338720 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 9 |
| Conread position: | 540-668 |
| Cow position: | chr23:1991676-1991548 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 6, 90 |
| Conread position: | 540-669 |
| Cow position: | chr23:35926345-35926475 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 541-667 |
| Cow position: | chr23:1883145-1883275 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 541-669 |
| Cow position: | chr23:14164648-14164518 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 541-669 |
| Cow position: | chr23:29742136-29742272 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 541-669 |
| Cow position: | chr23:40778015-40778149 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 20 |
| Conread position: | 542-669 |
| Cow position: | chr23:1398282-1398155 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 546-667 |
| Cow position: | chr23:20781582-20781706 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 78 |
| Conread position: | 546-669 |
| Cow position: | chr23:533988-534112 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 546-669 |
| Cow position: | chr23:7596573-7596450 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 39 |
| Conread position: | 546-669 |
| Cow position: | chr23:21343492-21343364 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 90, 78 |
| Conread position: | 546-669 |
| Cow position: | chr23:30662870-30662742 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 546-669 |
| Cow position: | chr23:33601766-33601645 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 98, 79 |
| Conread position: | 546-684 |
| Cow position: | chr23:21336731-21336593 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 80 |
| Conread position: | 548-647 |
| Cow position: | chr23:5744857-5744955 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-663 |
| Cow position: | chr23:7845049-7845170 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-663 |
| Cow position: | chr23:22804482-22804601 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 77 |
| Conread position: | 548-665 |
| Cow position: | chr23:39806633-39806749 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 548-667 |
| Cow position: | chr23:11128994-11129113 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-667 |
| Cow position: | chr23:20744829-20744710 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 78 |
| Conread position: | 548-667 |
| Cow position: | chr23:27529531-27529412 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 13 |
| Conread position: | 548-667 |
| Cow position: | chr23:29242705-29242831 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 548-667 |
| Cow position: | chr23:36199053-36199175 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 548-668 |
| Cow position: | chr23:25864922-25864805 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 548-669 |
| Cow position: | chr23:1878111-1877988 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 548-669 |
| Cow position: | chr23:1905788-1905913 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 548-669 |
| Cow position: | chr23:2055462-2055589 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 548-669 |
| Cow position: | chr23:3247348-3247468 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 548-669 |
| Cow position: | chr23:3262739-3262613 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 61 |
| Conread position: | 548-669 |
| Cow position: | chr23:7402466-7402585 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 67 |
| Conread position: | 548-669 |
| Cow position: | chr23:7937779-7937660 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 548-669 |
| Cow position: | chr23:8918093-8917968 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr23:9235303-9235188 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 548-669 |
| Cow position: | chr23:10852812-10852932 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 74 |
| Conread position: | 548-669 |
| Cow position: | chr23:11845048-11845168 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 51 |
| Conread position: | 548-669 |
| Cow position: | chr23:14739210-14739332 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 548-669 |
| Cow position: | chr23:14896043-14895917 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 12 |
| Conread position: | 548-669 |
| Cow position: | chr23:15056881-15056759 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 548-669 |
| Cow position: | chr23:18367455-18367578 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 548-669 |
| Cow position: | chr23:18698266-18698145 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 77 |
| Conread position: | 548-669 |
| Cow position: | chr23:20057107-20056983 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr23:21452973-21452848 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 548-669 |
| Cow position: | chr23:22574301-22574182 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 79 |
| Conread position: | 548-669 |
| Cow position: | chr23:37065597-37065724 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 75 |
| Conread position: | 548-669 |
| Cow position: | chr23:38414197-38414075 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 548-669 |
| Cow position: | chr23:39309355-39309232 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-670 |
| Cow position: | chr23:5617339-5617460 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 548-670 |
| Cow position: | chr23:10554251-10554124 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 548-670 |
| Cow position: | chr23:16700279-16700158 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 65 |
| Conread position: | 548-670 |
| Cow position: | chr23:26795144-26795025 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 548-672 |
| Cow position: | chr23:9712873-9713001 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-678 |
| Cow position: | chr23:5870423-5870291 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 548-678 |
| Cow position: | chr23:8006000-8006132 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-678 |
| Cow position: | chr23:25363103-25363240 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 548-678 |
| Cow position: | chr23:26003824-26003956 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 76 |
| Conread position: | 548-679 |
| Cow position: | chr23:8911238-8911366 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 66 |
| Conread position: | 548-679 |
| Cow position: | chr23:12896842-12896708 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 549-669 |
| Cow position: | chr23:344417-344291 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 549-669 |
| Cow position: | chr23:6244826-6244700 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 549-669 |
| Cow position: | chr23:39793214-39793334 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 550-669 |
| Cow position: | chr23:6767653-6767774 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 76, 10 |
| Conread position: | 551-667 |
| Cow position: | chr23:40781089-40781207 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 94, 73 |
| Conread position: | 551-669 |
| Cow position: | chr23:38854971-38854852 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 92, 32 |
| Conread position: | 551-670 |
| Cow position: | chr23:27563946-27563825 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 95, 73 |
| Conread position: | 551-678 |
| Cow position: | chr23:7175383-7175512 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 73 |
| Conread position: | 551-680 |
| Cow position: | chr23:27544595-27544723 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 552-669 |
| Cow position: | chr23:11045248-11045369 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 62 |
| Conread position: | 552-669 |
| Cow position: | chr23:15287370-15287247 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 553-669 |
| Cow position: | chr23:12050130-12050248 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 93, 70 |
| Conread position: | 553-669 |
| Cow position: | chr23:19979182-19979060 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 71 |
| Conread position: | 553-669 |
| Cow position: | chr23:25378421-25378537 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 15 |
| Conread position: | 554-668 |
| Cow position: | chr23:5603505-5603393 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 87, 70 |
| Conread position: | 554-669 |
| Cow position: | chr23:5162198-5162309 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 554-669 |
| Cow position: | chr23:35254472-35254355 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 74 |
| Conread position: | 555-667 |
| Cow position: | chr23:35366332-35366217 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 69 |
| Conread position: | 555-667 |
| Cow position: | chr23:35369244-35369129 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 69 |
| Conread position: | 555-667 |
| Cow position: | chr23:39775498-39775611 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 91, 16 |
| Conread position: | 555-669 |
| Cow position: | chr23:4579269-4579152 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 12, 71 |
| Conread position: | 555-669 |
| Cow position: | chr23:26632566-26632686 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 557-679 |
| Cow position: | chr23:5151757-5151884 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 119 |
| Conread position: | 560-669 |
| Cow position: | chr23:1924064-1923953 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 64 |
Show alignments to all cow chromosomes.