Cow genome map
| Conread name: | Ss1.1-Emb1-C0005193_O22.5 |
| Conread position: | 530-669 |
| Cow position: | chr24:15861883-15861744 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 116, 17 |
| Conread position: | 540-684 |
| Cow position: | chr24:27874327-27874469 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 87 |
| Conread position: | 541-668 |
| Cow position: | chr24:11876609-11876741 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 541-669 |
| Cow position: | chr24:18485274-18485140 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 541-669 |
| Cow position: | chr24:28062671-28062809 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 541-669 |
| Cow position: | chr24:31309147-31309272 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 541-669 |
| Cow position: | chr24:35795014-35794879 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 541-669 |
| Cow position: | chr24:38375011-38375142 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 545-680 |
| Cow position: | chr24:14550236-14550376 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 546-667 |
| Cow position: | chr24:45004686-45004811 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 546-668 |
| Cow position: | chr24:18732391-18732267 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 93, 61 |
| Conread position: | 546-669 |
| Cow position: | chr24:5754573-5754695 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 98, 63 |
| Conread position: | 546-669 |
| Cow position: | chr24:18741839-18741714 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 78 |
| Conread position: | 546-669 |
| Cow position: | chr24:29781894-29782021 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 546-670 |
| Cow position: | chr24:40055990-40055864 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 546-674 |
| Cow position: | chr24:39493028-39493156 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 79 |
| Conread position: | 547-669 |
| Cow position: | chr24:17407122-17407248 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 548-657 |
| Cow position: | chr24:19487-19378 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 96, 76 |
| Conread position: | 548-658 |
| Cow position: | chr24:27844786-27844674 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 99, 76 |
| Conread position: | 548-663 |
| Cow position: | chr24:17311475-17311358 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 548-665 |
| Cow position: | chr24:28303614-28303499 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 548-667 |
| Cow position: | chr24:3493627-3493747 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 26 |
| Conread position: | 548-667 |
| Cow position: | chr24:18324349-18324475 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 548-667 |
| Cow position: | chr24:18390554-18390434 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 17 |
| Conread position: | 548-667 |
| Cow position: | chr24:29673253-29673374 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 548-668 |
| Cow position: | chr24:25950933-25950809 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 89, 76 |
| Conread position: | 548-669 |
| Cow position: | chr24:2730836-2730713 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-669 |
| Cow position: | chr24:3165555-3165678 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 548-669 |
| Cow position: | chr24:5151969-5152091 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 548-669 |
| Cow position: | chr24:11734456-11734583 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 76 |
| Conread position: | 548-669 |
| Cow position: | chr24:15246902-15246777 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 77 |
| Conread position: | 548-669 |
| Cow position: | chr24:15288591-15288718 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 91, 76 |
| Conread position: | 548-669 |
| Cow position: | chr24:15508800-15508681 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 101, 12 |
| Conread position: | 548-669 |
| Cow position: | chr24:19658282-19658410 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 548-669 |
| Cow position: | chr24:19769232-19769350 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 548-669 |
| Cow position: | chr24:20024341-20024468 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr24:20874410-20874537 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr24:23556595-23556470 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 548-669 |
| Cow position: | chr24:23616429-23616549 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 548-669 |
| Cow position: | chr24:24250466-24250585 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-669 |
| Cow position: | chr24:27941274-27941152 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 548-669 |
| Cow position: | chr24:27967814-27967935 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 548-669 |
| Cow position: | chr24:28689444-28689565 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 80 |
| Conread position: | 548-669 |
| Cow position: | chr24:30177970-30178092 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 548-669 |
| Cow position: | chr24:31816319-31816445 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 79 |
| Conread position: | 548-669 |
| Cow position: | chr24:32205060-32204937 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 548-669 |
| Cow position: | chr24:36486325-36486201 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 12 |
| Conread position: | 548-669 |
| Cow position: | chr24:36555094-36554975 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 548-669 |
| Cow position: | chr24:37650404-37650527 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 76 |
| Conread position: | 548-669 |
| Cow position: | chr24:38347413-38347539 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 77 |
| Conread position: | 548-669 |
| Cow position: | chr24:39219112-39218986 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 548-669 |
| Cow position: | chr24:39483207-39483334 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 76 |
| Conread position: | 548-669 |
| Cow position: | chr24:40300889-40301016 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 77 |
| Conread position: | 548-669 |
| Cow position: | chr24:43200540-43200419 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 548-669 |
| Cow position: | chr24:43364097-43364216 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 98, 67 |
| Conread position: | 548-669 |
| Cow position: | chr24:43370982-43371104 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 548-669 |
| Cow position: | chr24:43432536-43432649 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 548-670 |
| Cow position: | chr24:11839913-11840036 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 548-670 |
| Cow position: | chr24:30545122-30545008 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-670 |
| Cow position: | chr24:33098754-33098634 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 78, 90 |
| Conread position: | 548-670 |
| Cow position: | chr24:33238815-33238690 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 7, 77 |
| Conread position: | 548-670 |
| Cow position: | chr24:35467446-35467322 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 7, 77 |
| Conread position: | 548-674 |
| Cow position: | chr24:19804421-19804552 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 90, 76 |
| Conread position: | 548-674 |
| Cow position: | chr24:28600874-28600754 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 548-678 |
| Cow position: | chr24:6900558-6900690 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 76 |
| Conread position: | 548-678 |
| Cow position: | chr24:15666675-15666541 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 78, 127 |
| Conread position: | 548-678 |
| Cow position: | chr24:39440824-39440691 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 549-668 |
| Cow position: | chr24:33944142-33944260 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 97, 64 |
| Conread position: | 550-669 |
| Cow position: | chr24:1269540-1269655 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 550-669 |
| Cow position: | chr24:38814707-38814825 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 73 |
| Conread position: | 550-670 |
| Cow position: | chr24:25424799-25424920 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 551-674 |
| Cow position: | chr24:16625764-16625639 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 73 |
| Conread position: | 553-669 |
| Cow position: | chr24:15473094-15473217 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 554-669 |
| Cow position: | chr24:11886897-11887018 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 554-669 |
| Cow position: | chr24:27906174-27906295 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 87, 70 |
| Conread position: | 554-673 |
| Cow position: | chr24:19736634-19736518 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 555-669 |
| Cow position: | chr24:8886657-8886768 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 555-669 |
| Cow position: | chr24:30229209-30229328 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 556-669 |
| Cow position: | chr24:11064597-11064710 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 90, 68 |
| Conread position: | 556-683 |
| Cow position: | chr24:40129865-40129993 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 557-669 |
| Cow position: | chr24:34564869-34564980 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 99, 57 |
| Conread position: | 564-669 |
| Cow position: | chr24:33372300-33372411 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.