Cow genome map

Conread name: Ss1.1-Emb1-C0005193_O22.5

Conread position: 3-153
Cow position: chr25:22708356-22708198 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 136

Conread position: 523-669
Cow position: chr25:24669697-24669557 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 525-667
Cow position: chr25:18988109-18988257 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 101, 0

Conread position: 534-669
Cow position: chr25:24405992-24405857 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 109, 13

Conread position: 536-678
Cow position: chr25:12294005-12293858 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 102, 11

Conread position: 541-668
Cow position: chr25:10643562-10643428 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 541-669
Cow position: chr25:9957284-9957161 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 74

Conread position: 542-669
Cow position: chr25:11585267-11585401 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 7, 0

Conread position: 542-669
Cow position: chr25:15694732-15694861 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 7, 81

Conread position: 542-678
Cow position: chr25:17475774-17475641 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 546-669
Cow position: chr25:1735562-1735433 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 112
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 92, 78

Conread position: 546-669
Cow position: chr25:19679096-19679225 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 93, 78

Conread position: 546-669
Cow position: chr25:21895133-21895007 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 15, 79

Conread position: 546-669
Cow position: chr25:36026761-36026887 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 91, 75

Conread position: 546-669
Cow position: chr25:36037026-36036901 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 98, 78

Conread position: 546-670
Cow position: chr25:17354136-17354256 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 548-661
Cow position: chr25:14117865-14117980 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 98, 79

Conread position: 548-661
Cow position: chr25:22531043-22531158 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 90, 66

Conread position: 548-662
Cow position: chr25:12174749-12174629 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 548-666
Cow position: chr25:16400494-16400383 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 548-667
Cow position: chr25:1096333-1096455 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 97, 0

Conread position: 548-667
Cow position: chr25:25051628-25051504 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 548-667
Cow position: chr25:28188192-28188071 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 88, 15

Conread position: 548-668
Cow position: chr25:8347265-8347382 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 548-668
Cow position: chr25:9023401-9023521 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 91, 31

Conread position: 548-668
Cow position: chr25:11437046-11436928 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 96, 76

Conread position: 548-668
Cow position: chr25:33256125-33256246 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 98, 12

Conread position: 548-669
Cow position: chr25:1837996-1838116 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 96, 26

Conread position: 548-669
Cow position: chr25:6891764-6891646 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 68

Conread position: 548-669
Cow position: chr25:7440611-7440730 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 94, 0

Conread position: 548-669
Cow position: chr25:7581671-7581545 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 96, 12

Conread position: 548-669
Cow position: chr25:8918522-8918392 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 548-669
Cow position: chr25:9842756-9842883 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 47

Conread position: 548-669
Cow position: chr25:10156347-10156468 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 93, 75

Conread position: 548-669
Cow position: chr25:10365996-10365872 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 97, 0

Conread position: 548-669
Cow position: chr25:12204226-12204347 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 97, 76

Conread position: 548-669
Cow position: chr25:13720782-13720660 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 51

Conread position: 548-669
Cow position: chr25:16001765-16001645 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 77

Conread position: 548-669
Cow position: chr25:16064653-16064768 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 548-669
Cow position: chr25:16319376-16319251 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 95, 76

Conread position: 548-669
Cow position: chr25:16922038-16921911 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 548-669
Cow position: chr25:17658371-17658492 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 106
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 98, 12

Conread position: 548-669
Cow position: chr25:17712290-17712410 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 548-669
Cow position: chr25:18293513-18293629 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 97, 12

Conread position: 548-669
Cow position: chr25:18935119-18934993 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 13, 74

Conread position: 548-669
Cow position: chr25:26087271-26087398 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 548-669
Cow position: chr25:26238627-26238750 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 104
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 96, 76

Conread position: 548-669
Cow position: chr25:26700796-26700916 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 95, 11

Conread position: 548-669
Cow position: chr25:30319693-30319570 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 103
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 96, 76

Conread position: 548-669
Cow position: chr25:33691310-33691436 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 12

Conread position: 548-669
Cow position: chr25:33839144-33839257 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 548-670
Cow position: chr25:7800892-7801020 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 548-672
Cow position: chr25:21950882-21951008 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 84, 76

Conread position: 548-677
Cow position: chr25:10137854-10137985 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 96, 76

Conread position: 548-678
Cow position: chr25:18294558-18294429 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 77

Conread position: 548-678
Cow position: chr25:20348614-20348747 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 89, 76

Conread position: 548-684
Cow position: chr25:21245850-21245713 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 98, 12

Conread position: 549-669
Cow position: chr25:7216585-7216710 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 87, 0

Conread position: 549-669
Cow position: chr25:21209191-21209065 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 549-669
Cow position: chr25:40321535-40321410 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 90, 11

Conread position: 550-647
Cow position: chr25:33687138-33687042 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 550-667
Cow position: chr25:6003233-6003110 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 550-669
Cow position: chr25:18490830-18490948 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 77, 0

Conread position: 550-669
Cow position: chr25:23829359-23829240 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 95, 33

Conread position: 551-669
Cow position: chr25:14791511-14791633 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 551-669
Cow position: chr25:15254572-15254452 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 94, 73

Conread position: 551-669
Cow position: chr25:15377092-15377207 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 552-667
Cow position: chr25:36119961-36120079 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 68, 80

Conread position: 553-669
Cow position: chr25:7329305-7329427 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 553-669
Cow position: chr25:10746661-10746779 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 93, 68

Conread position: 554-669
Cow position: chr25:12778770-12778649 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 554-669
Cow position: chr25:24452407-24452289 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 45, 20

Conread position: 556-669
Cow position: chr25:9642118-9642236 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 67

Conread position: 556-669
Cow position: chr25:14266740-14266624 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 88, 68

Conread position: 556-678
Cow position: chr25:20402956-20402828 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 556-684
Cow position: chr25:61421-61550 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 87, 68

Conread position: 557-669
Cow position: chr25:6474334-6474216 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 557-670
Cow position: chr25:9396215-9396330 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 90, 67

Conread position: 558-669
Cow position: chr25:433314-433204 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 558-669
Cow position: chr25:6256172-6256060 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 88, 41

Show alignments to all cow chromosomes.