Cow genome map
| Conread name: | Ss1.1-Emb1-C0005193_O22.5 |
| Conread position: | 531-667 |
| Cow position: | chr27:20354797-20354661 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 90 |
| Conread position: | 534-669 |
| Cow position: | chr27:25277348-25277216 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 535-667 |
| Cow position: | chr27:10275484-10275611 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 538-669 |
| Cow position: | chr27:19685505-19685636 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 540-643 |
| Cow position: | chr27:23595477-23595377 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 540-672 |
| Cow position: | chr27:10980071-10979932 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 541-668 |
| Cow position: | chr27:28207004-28206870 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 541-669 |
| Cow position: | chr27:21452864-21452998 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 541-669 |
| Cow position: | chr27:27528155-27528286 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 84 |
| Conread position: | 545-669 |
| Cow position: | chr27:26427927-26428057 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 546-663 |
| Cow position: | chr27:16620191-16620069 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 546-667 |
| Cow position: | chr27:28001618-28001732 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 546-669 |
| Cow position: | chr27:27040809-27040683 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 546-669 |
| Cow position: | chr27:30362443-30362318 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 39 |
| Conread position: | 546-669 |
| Cow position: | chr27:30551196-30551072 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 98, 78 |
| Conread position: | 546-678 |
| Cow position: | chr27:22771958-22771821 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 94, 78 |
| Conread position: | 546-683 |
| Cow position: | chr27:23554119-23554263 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 548-663 |
| Cow position: | chr27:4385867-4385981 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 13, 77 |
| Conread position: | 548-665 |
| Cow position: | chr27:15858893-15859011 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 97, 12 |
| Conread position: | 548-667 |
| Cow position: | chr27:10307097-10307221 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-667 |
| Cow position: | chr27:13198114-13197990 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 548-667 |
| Cow position: | chr27:13847837-13847716 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 76 |
| Conread position: | 548-667 |
| Cow position: | chr27:26398061-26398182 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 12 |
| Conread position: | 548-667 |
| Cow position: | chr27:30582936-30582817 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 86, 79 |
| Conread position: | 548-668 |
| Cow position: | chr27:299185-299311 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr27:1768437-1768552 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 44 |
| Conread position: | 548-669 |
| Cow position: | chr27:1884236-1884112 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 28, 77 |
| Conread position: | 548-669 |
| Cow position: | chr27:4673219-4673094 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 79 |
| Conread position: | 548-669 |
| Cow position: | chr27:6074114-6073996 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 76, 15 |
| Conread position: | 548-669 |
| Cow position: | chr27:6523244-6523118 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 548-669 |
| Cow position: | chr27:8962071-8962189 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 114, 60 |
| Conread position: | 548-669 |
| Cow position: | chr27:12429606-12429478 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 67, 12 |
| Conread position: | 548-669 |
| Cow position: | chr27:12516397-12516270 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 62, 78 |
| Conread position: | 548-669 |
| Cow position: | chr27:13638794-13638917 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 87, 76 |
| Conread position: | 548-669 |
| Cow position: | chr27:15454411-15454286 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 548-669 |
| Cow position: | chr27:17473011-17472888 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 76 |
| Conread position: | 548-669 |
| Cow position: | chr27:18215254-18215127 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 90, 76 |
| Conread position: | 548-669 |
| Cow position: | chr27:18507830-18507709 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 107, 76 |
| Conread position: | 548-669 |
| Cow position: | chr27:20553915-20553795 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-669 |
| Cow position: | chr27:22035175-22035302 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr27:22171496-22171375 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 93, 20 |
| Conread position: | 548-669 |
| Cow position: | chr27:22179599-22179719 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-669 |
| Cow position: | chr27:23070162-23070286 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 12 |
| Conread position: | 548-669 |
| Cow position: | chr27:23472456-23472327 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 548-669 |
| Cow position: | chr27:23483421-23483300 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 73 |
| Conread position: | 548-669 |
| Cow position: | chr27:24014543-24014665 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 96, 15 |
| Conread position: | 548-669 |
| Cow position: | chr27:24445958-24446083 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 548-669 |
| Cow position: | chr27:25380189-25380068 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 72 |
| Conread position: | 548-669 |
| Cow position: | chr27:25809325-25809440 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 548-669 |
| Cow position: | chr27:26625324-26625201 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 77 |
| Conread position: | 548-669 |
| Cow position: | chr27:27141790-27141669 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 548-669 |
| Cow position: | chr27:27449236-27449359 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 548-669 |
| Cow position: | chr27:27640794-27640920 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 12 |
| Conread position: | 548-669 |
| Cow position: | chr27:28518483-28518365 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 548-670 |
| Cow position: | chr27:9978025-9977902 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 94, 76 |
| Conread position: | 548-670 |
| Cow position: | chr27:11255711-11255589 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 98, 73 |
| Conread position: | 548-670 |
| Cow position: | chr27:15866421-15866298 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 548-674 |
| Cow position: | chr27:7958637-7958763 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 73 |
| Conread position: | 548-678 |
| Cow position: | chr27:6500263-6500127 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 89, 76 |
| Conread position: | 548-678 |
| Cow position: | chr27:22723508-22723635 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-680 |
| Cow position: | chr27:9090603-9090739 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 548-684 |
| Cow position: | chr27:30374372-30374511 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 132 |
| Conread position: | 549-669 |
| Cow position: | chr27:4812680-4812805 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 83, 11 |
| Conread position: | 549-669 |
| Cow position: | chr27:6550648-6550532 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 549-669 |
| Cow position: | chr27:25411322-25411442 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 75 |
| Conread position: | 550-669 |
| Cow position: | chr27:2011907-2012025 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 96, 29 |
| Conread position: | 550-669 |
| Cow position: | chr27:18922646-18922526 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 551-665 |
| Cow position: | chr27:23511317-23511201 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 114 |
| Conread position: | 551-674 |
| Cow position: | chr27:22440335-22440207 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 555-669 |
| Cow position: | chr27:21393312-21393426 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 70 |
| Conread position: | 555-670 |
| Cow position: | chr27:28921705-28921824 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 556-669 |
| Cow position: | chr27:20592174-20592059 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 68 |
| Conread position: | 556-674 |
| Cow position: | chr27:20036938-20037056 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 68 |
| Conread position: | 557-669 |
| Cow position: | chr27:68252-68367 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 7 |
| Conread position: | 557-704 |
| Cow position: | chr27:26406851-26407007 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 560-665 |
| Cow position: | chr27:10992540-10992433 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 64 |
| Conread position: | 564-669 |
| Cow position: | chr27:27550565-27550669 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.