Cow genome map
| Conread name: | Ss1.1-Emb1-C0005193_O22.5 |
| Conread position: | 522-656 |
| Cow position: | chr28:17287962-17288096 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 532-669 |
| Cow position: | chr28:25762776-25762912 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 76 |
| Conread position: | 534-669 |
| Cow position: | chr28:4070721-4070856 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 81, 13 |
| Conread position: | 537-648 |
| Cow position: | chr28:7547592-7547483 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 109, 11 |
| Conread position: | 540-669 |
| Cow position: | chr28:34878218-34878085 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 541-665 |
| Cow position: | chr28:2898751-2898878 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 541-669 |
| Cow position: | chr28:8372226-8372361 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 11, 84 |
| Conread position: | 543-648 |
| Cow position: | chr28:19394388-19394494 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 85 |
| Conread position: | 546-669 |
| Cow position: | chr28:24646302-24646431 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 546-669 |
| Cow position: | chr28:26743384-26743505 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 547-669 |
| Cow position: | chr28:10295952-10296080 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 548-644 |
| Cow position: | chr28:16925447-16925352 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-656 |
| Cow position: | chr28:5837876-5837982 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-661 |
| Cow position: | chr28:26922600-26922486 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 548-665 |
| Cow position: | chr28:4841633-4841509 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 45, 77 |
| Conread position: | 548-669 |
| Cow position: | chr28:1099878-1099758 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:2279902-2279777 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:2905344-2905467 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 97, 76 |
| Conread position: | 548-669 |
| Cow position: | chr28:3024148-3024025 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 96, 79 |
| Conread position: | 548-669 |
| Cow position: | chr28:3144126-3144005 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 548-669 |
| Cow position: | chr28:4022146-4022271 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 95, 76 |
| Conread position: | 548-669 |
| Cow position: | chr28:4282728-4282603 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 76 |
| Conread position: | 548-669 |
| Cow position: | chr28:5658318-5658439 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 548-669 |
| Cow position: | chr28:8022347-8022222 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 89, 54 |
| Conread position: | 548-669 |
| Cow position: | chr28:8348889-8348763 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:9285614-9285487 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 90, 75 |
| Conread position: | 548-669 |
| Cow position: | chr28:9636693-9636566 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:10529719-10529599 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:11423040-11422924 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 96, 33 |
| Conread position: | 548-669 |
| Cow position: | chr28:13242060-13241942 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:13267545-13267672 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:13371404-13371287 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:14657464-14657587 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-669 |
| Cow position: | chr28:16450931-16450817 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:16686796-16686917 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 548-669 |
| Cow position: | chr28:16879504-16879387 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 93, 43 |
| Conread position: | 548-669 |
| Cow position: | chr28:17029951-17029831 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 548-669 |
| Cow position: | chr28:20124549-20124670 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 548-669 |
| Cow position: | chr28:21844720-21844846 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 548-669 |
| Cow position: | chr28:22170954-22170831 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 76 |
| Conread position: | 548-669 |
| Cow position: | chr28:22345783-22345906 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 96, 36 |
| Conread position: | 548-669 |
| Cow position: | chr28:23775809-23775936 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:23793537-23793416 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 97, 12 |
| Conread position: | 548-669 |
| Cow position: | chr28:25498740-25498613 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:25596396-25596519 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:26103479-26103597 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-669 |
| Cow position: | chr28:26784703-26784580 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 548-670 |
| Cow position: | chr28:14933726-14933853 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 12 |
| Conread position: | 548-670 |
| Cow position: | chr28:16109708-16109829 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-673 |
| Cow position: | chr28:5792466-5792591 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 548-674 |
| Cow position: | chr28:5773406-5773531 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 548-674 |
| Cow position: | chr28:19222833-19222706 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 548-678 |
| Cow position: | chr28:4914338-4914202 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 548-678 |
| Cow position: | chr28:10682054-10681926 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 45 |
| Conread position: | 548-678 |
| Cow position: | chr28:15272497-15272365 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 87, 76 |
| Conread position: | 548-684 |
| Cow position: | chr28:32813235-32813098 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 42 |
| Conread position: | 548-703 |
| Cow position: | chr28:7372487-7372326 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 32 |
| Conread position: | 549-669 |
| Cow position: | chr28:34229994-34230117 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 81, 75 |
| Conread position: | 550-669 |
| Cow position: | chr28:11884757-11884633 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 550-669 |
| Cow position: | chr28:12933996-12933875 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 94, 74 |
| Conread position: | 550-669 |
| Cow position: | chr28:13176913-13176788 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 550-669 |
| Cow position: | chr28:16243993-16243872 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 550-669 |
| Cow position: | chr28:24996822-24996701 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 80, 32 |
| Conread position: | 550-670 |
| Cow position: | chr28:3077759-3077877 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 550-670 |
| Cow position: | chr28:3078912-3078793 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 550-671 |
| Cow position: | chr28:31987369-31987491 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 49 |
| Conread position: | 550-672 |
| Cow position: | chr28:21502161-21502284 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 93, 10 |
| Conread position: | 551-669 |
| Cow position: | chr28:7751534-7751410 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 553-669 |
| Cow position: | chr28:3480038-3480156 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 93, 71 |
| Conread position: | 553-669 |
| Cow position: | chr28:12430378-12430494 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 71 |
| Conread position: | 553-684 |
| Cow position: | chr28:5144754-5144620 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 554-669 |
| Cow position: | chr28:5366360-5366241 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 21 |
| Conread position: | 554-669 |
| Cow position: | chr28:5771139-5771253 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 555-668 |
| Cow position: | chr28:9390594-9390477 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 69 |
| Conread position: | 555-669 |
| Cow position: | chr28:23675914-23676027 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 89, 68 |
| Conread position: | 556-668 |
| Cow position: | chr28:33163696-33163578 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 557-669 |
| Cow position: | chr28:16253085-16252974 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 557-670 |
| Cow position: | chr28:11827266-11827378 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 67 |
| Conread position: | 559-669 |
| Cow position: | chr28:8629002-8628890 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 87, 65 |
| Conread position: | 559-669 |
| Cow position: | chr28:18717348-18717235 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 66 |
Show alignments to all cow chromosomes.