Cow genome map
| Conread name: | Ss1.1-Emb1-C0005193_O22.5 |
| Conread position: | 522-669 |
| Cow position: | chr29:35459042-35458895 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 14, 98 |
| Conread position: | 535-667 |
| Cow position: | chr29:20903542-20903406 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 89, 12 |
| Conread position: | 538-670 |
| Cow position: | chr29:4804982-4805112 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 106, 9 |
| Conread position: | 540-667 |
| Cow position: | chr29:4328182-4328302 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 541-669 |
| Cow position: | chr29:36530612-36530747 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 542-669 |
| Cow position: | chr29:6925769-6925892 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 542-678 |
| Cow position: | chr29:23578025-23577888 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 82, 129 |
| Conread position: | 545-669 |
| Cow position: | chr29:9139162-9139289 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 99, 79 |
| Conread position: | 546-650 |
| Cow position: | chr29:18212227-18212124 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 546-666 |
| Cow position: | chr29:6635859-6635974 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 546-667 |
| Cow position: | chr29:6014858-6014979 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 100, 41 |
| Conread position: | 546-669 |
| Cow position: | chr29:11696288-11696410 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 546-669 |
| Cow position: | chr29:13458813-13458938 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 78 |
| Conread position: | 546-669 |
| Cow position: | chr29:16309505-16309622 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 546-669 |
| Cow position: | chr29:17109725-17109848 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 546-669 |
| Cow position: | chr29:17409084-17409211 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 42, 79 |
| Conread position: | 546-669 |
| Cow position: | chr29:21665725-21665850 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 99, 78 |
| Conread position: | 546-669 |
| Cow position: | chr29:26263606-26263728 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 546-669 |
| Cow position: | chr29:37599449-37599328 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 546-669 |
| Cow position: | chr29:37961222-37961098 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 99, 14 |
| Conread position: | 546-669 |
| Cow position: | chr29:40891947-40891818 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 90, 77 |
| Conread position: | 546-669 |
| Cow position: | chr29:40902964-40902840 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 19 |
| Conread position: | 546-670 |
| Cow position: | chr29:11915571-11915701 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 546-674 |
| Cow position: | chr29:41747195-41747322 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 547-669 |
| Cow position: | chr29:36586334-36586459 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 90, 77 |
| Conread position: | 548-647 |
| Cow position: | chr29:26778641-26778739 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-654 |
| Cow position: | chr29:26130540-26130647 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 76 |
| Conread position: | 548-665 |
| Cow position: | chr29:39567445-39567563 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 97, 12 |
| Conread position: | 548-666 |
| Cow position: | chr29:11684769-11684886 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-666 |
| Cow position: | chr29:12005007-12004892 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 548-667 |
| Cow position: | chr29:9638555-9638440 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-667 |
| Cow position: | chr29:28195762-28195636 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 548-667 |
| Cow position: | chr29:35738513-35738388 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-669 |
| Cow position: | chr29:109467-109587 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 548-669 |
| Cow position: | chr29:686434-686312 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 548-669 |
| Cow position: | chr29:3395867-3395986 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 548-669 |
| Cow position: | chr29:6844872-6844751 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 12 |
| Conread position: | 548-669 |
| Cow position: | chr29:9911934-9912052 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 548-669 |
| Cow position: | chr29:11562371-11562495 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 76 |
| Conread position: | 548-669 |
| Cow position: | chr29:12784198-12784077 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 78 |
| Conread position: | 548-669 |
| Cow position: | chr29:18085347-18085473 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 548-669 |
| Cow position: | chr29:19756205-19756327 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 548-669 |
| Cow position: | chr29:22162496-22162373 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 77 |
| Conread position: | 548-669 |
| Cow position: | chr29:22720885-22721010 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 548-669 |
| Cow position: | chr29:23984207-23984079 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 548-669 |
| Cow position: | chr29:25737660-25737538 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 8, 79 |
| Conread position: | 548-669 |
| Cow position: | chr29:26734790-26734911 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 93, 79 |
| Conread position: | 548-669 |
| Cow position: | chr29:29056941-29057061 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 43 |
| Conread position: | 548-669 |
| Cow position: | chr29:29066183-29066306 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 96, 76 |
| Conread position: | 548-669 |
| Cow position: | chr29:31926533-31926410 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 93, 46 |
| Conread position: | 548-669 |
| Cow position: | chr29:45588716-45588593 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 89, 76 |
| Conread position: | 548-670 |
| Cow position: | chr29:21236873-21236998 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 66, 84 |
| Conread position: | 548-674 |
| Cow position: | chr29:32799946-32799827 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 548-678 |
| Cow position: | chr29:5919568-5919432 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 548-678 |
| Cow position: | chr29:21933356-21933226 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 73 |
| Conread position: | 548-683 |
| Cow position: | chr29:585039-585172 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 549-661 |
| Cow position: | chr29:35501890-35501779 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 95, 11 |
| Conread position: | 549-669 |
| Cow position: | chr29:356084-356205 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 549-669 |
| Cow position: | chr29:5046516-5046398 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 549-669 |
| Cow position: | chr29:25474665-25474791 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 550-667 |
| Cow position: | chr29:24119978-24119857 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 74 |
| Conread position: | 550-669 |
| Cow position: | chr29:25088512-25088633 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 550-678 |
| Cow position: | chr29:13553891-13554023 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 74 |
| Conread position: | 550-678 |
| Cow position: | chr29:29312756-29312632 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 551-674 |
| Cow position: | chr29:17668255-17668384 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 553-672 |
| Cow position: | chr29:1933795-1933674 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 71 |
| Conread position: | 554-669 |
| Cow position: | chr29:4520098-4520215 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 92, 70 |
| Conread position: | 555-669 |
| Cow position: | chr29:16735242-16735122 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 555-669 |
| Cow position: | chr29:36216881-36216997 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 69 |
| Conread position: | 555-670 |
| Cow position: | chr29:19949073-19949194 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 68 |
| Conread position: | 555-681 |
| Cow position: | chr29:24578640-24578773 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 74 |
| Conread position: | 557-678 |
| Cow position: | chr29:23844597-23844724 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 80, 67 |
| Conread position: | 561-670 |
| Cow position: | chr29:39642946-39643056 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 63 |
| Conread position: | 566-684 |
| Cow position: | chr29:3711161-3711280 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 75, 57 |
Show alignments to all cow chromosomes.