Cow genome map

Conread name: Ss1.1-Emb1-C0005194_C01.5

Conread position: 1-473
Cow position: chr14:680803-681275 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 287
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 1-553
Cow position: chr14:25910743-25911291 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 345
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 137, 45

Conread position: 1-560
Cow position: chr14:3100927-3100370 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 43

Conread position: 1-675
Cow position: chr14:447581-448255 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 398
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 153, 158

Conread position: 1-686
Cow position: chr14:3156058-3156734 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 395, 383

Conread position: 1-709
Cow position: chr14:25794854-25794147 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 136

Conread position: 1-720
Cow position: chr14:25783924-25784643 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 138

Conread position: 1-768
Cow position: chr14:3101176-3100414 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 484, 116

Conread position: 1-768
Cow position: chr14:3155569-3156321 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 485, 270

Conread position: 1-768
Cow position: chr14:25783504-25784271 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 138

Conread position: 1-768
Cow position: chr14:25783588-25784355 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 309

Conread position: 1-768
Cow position: chr14:25795274-25794507 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 577, 556

Conread position: 1-768
Cow position: chr14:25795442-25794675 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 143

Conread position: 1-768
Cow position: chr14:25836123-25836890 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 137

Conread position: 1-768
Cow position: chr14:25859176-25859943 (view UCSC Genome Browser custom track)
Alignm length: 775
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 50

Conread position: 1-768
Cow position: chr14:25859848-25860615 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 154

Conread position: 2-351
Cow position: chr14:3155486-3155835 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 220
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 34, 27

Conread position: 2-435
Cow position: chr14:25896031-25896461 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 257
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 62

Conread position: 2-443
Cow position: chr14:25910824-25911265 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 278
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 389, 382

Conread position: 2-476
Cow position: chr14:3155975-3156449 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 27

Conread position: 2-600
Cow position: chr14:25836628-25837226 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 153

Conread position: 2-638
Cow position: chr14:25784093-25784729 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 135

Conread position: 2-720
Cow position: chr14:25784009-25784727 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 226

Conread position: 2-722
Cow position: chr14:680552-681272 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 85

Conread position: 2-723
Cow position: chr14:3061664-3060943 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 417
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 389, 376

Conread position: 2-723
Cow position: chr14:25877152-25877873 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 66

Conread position: 2-725
Cow position: chr14:25895443-25896166 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 424
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 158, 151

Conread position: 2-735
Cow position: chr14:3080433-3079700 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 136

Conread position: 2-759
Cow position: chr14:3128029-3127272 (view UCSC Genome Browser custom track)
Alignm length: 761
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 62

Conread position: 2-760
Cow position: chr14:25877068-25877826 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 150

Conread position: 2-765
Cow position: chr14:3080517-3079754 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 219

Conread position: 2-765
Cow position: chr14:25895611-25896374 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 442
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 142, 153

Conread position: 2-768
Cow position: chr14:680384-681150 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 195

Conread position: 2-768
Cow position: chr14:3061496-3060730 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 445
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 50, 58

Conread position: 2-768
Cow position: chr14:3080685-3079919 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 395, 384

Conread position: 2-768
Cow position: chr14:3080937-3080171 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-768
Cow position: chr14:3128113-3127347 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 58

Conread position: 2-768
Cow position: chr14:25836040-25836806 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 495, 505

Conread position: 2-768
Cow position: chr14:25836208-25836974 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 305

Conread position: 2-768
Cow position: chr14:25836292-25837058 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 324

Conread position: 2-768
Cow position: chr14:25859513-25860279 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 218

Conread position: 2-768
Cow position: chr14:25859597-25860363 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 128

Conread position: 2-768
Cow position: chr14:25859681-25860447 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 240

Conread position: 2-768
Cow position: chr14:25860017-25860783 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 150

Conread position: 2-768
Cow position: chr14:25876648-25877414 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 73

Conread position: 2-768
Cow position: chr14:25876732-25877498 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 66

Conread position: 2-768
Cow position: chr14:25876816-25877582 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 237

Conread position: 2-768
Cow position: chr14:25876900-25877666 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 154

Conread position: 2-768
Cow position: chr14:25876984-25877750 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 70

Conread position: 2-768
Cow position: chr14:25895023-25895789 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 446
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 73

Conread position: 2-768
Cow position: chr14:25895191-25895957 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 443
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 50, 73

Conread position: 3-768
Cow position: chr14:25910417-25911170 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 457
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 89, 21

Conread position: 4-767
Cow position: chr14:3101342-3100583 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 148

Conread position: 8-721
Cow position: chr14:3101420-3100713 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 40

Conread position: 11-437
Cow position: chr14:3155411-3155837 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 263
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 11-699
Cow position: chr14:25860110-25860798 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 405
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 64, 57

Conread position: 11-723
Cow position: chr14:3081012-3080300 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 11-768
Cow position: chr14:3155900-3156648 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 373

Conread position: 11-768
Cow position: chr14:25836469-25837226 (view UCSC Genome Browser custom track)
Alignm length: 760
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 193

Conread position: 12-768
Cow position: chr14:25783431-25784187 (view UCSC Genome Browser custom track)
Alignm length: 761
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 125

Conread position: 14-765
Cow position: chr14:25795009-25794257 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 121

Conread position: 14-768
Cow position: chr14:25795093-25794339 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 205

Conread position: 14-768
Cow position: chr14:25876492-25877246 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 228

Conread position: 16-759
Cow position: chr14:25795343-25794600 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 38

Conread position: 30-768
Cow position: chr14:25876340-25877078 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 122

Conread position: 50-768
Cow position: chr14:25836004-25836722 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 192

Conread position: 52-768
Cow position: chr14:25795476-25794759 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 9

Conread position: 59-768
Cow position: chr14:680525-681234 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 130

Conread position: 61-768
Cow position: chr14:25783312-25784019 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 114

Conread position: 63-768
Cow position: chr14:680361-681066 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 274

Conread position: 66-768
Cow position: chr14:3101195-3100498 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 668, 133

Conread position: 73-768
Cow position: chr14:25859332-25860027 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 660, 671

Conread position: 74-715
Cow position: chr14:3100938-3100290 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 393
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 439, 51

Conread position: 74-753
Cow position: chr14:3128125-3127446 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 74-760
Cow position: chr14:447570-448256 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 410
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 81, 65

Conread position: 74-768
Cow position: chr14:3101438-3100750 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 57

Conread position: 74-768
Cow position: chr14:25783913-25784607 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 316

Conread position: 74-768
Cow position: chr14:25895599-25896293 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 410
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 71, 64

Conread position: 84-768
Cow position: chr14:680214-680898 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 396
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 86-768
Cow position: chr14:25895443-25896125 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 401
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 114, 118

Conread position: 88-768
Cow position: chr14:25894941-25895621 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 412
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 66

Conread position: 92-768
Cow position: chr14:3155408-3156069 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 431, 0

Conread position: 95-678
Cow position: chr14:3155900-3156483 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 102

Conread position: 158-723
Cow position: chr14:447570-448135 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 160

Conread position: 159-768
Cow position: chr14:3128208-3127599 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 63

Conread position: 160-570
Cow position: chr14:3155392-3155802 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 160-762
Cow position: chr14:3155881-3156483 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 587, 580

Conread position: 161-768
Cow position: chr14:25835697-25836302 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 348
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 75, 12

Conread position: 170-722
Cow position: chr14:25910744-25911292 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 337
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 46, 0

Conread position: 201-768
Cow position: chr14:25835651-25836218 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 334
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 55

Conread position: 244-687
Cow position: chr14:3155392-3155835 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 244-765
Cow position: chr14:3155881-3156402 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 378, 373

Conread position: 250-768
Cow position: chr14:25859173-25859691 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 322
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 73, 66

Conread position: 253-768
Cow position: chr14:25876227-25876742 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 314
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 60, 51

Conread position: 253-768
Cow position: chr14:25910743-25911254 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 313
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 140, 47

Conread position: 325-768
Cow position: chr14:3155389-3155832 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 275
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 326-768
Cow position: chr14:447570-448012 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 272
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 71, 60

Conread position: 409-758
Cow position: chr14:3101439-3101091 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 225
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 77, 61

Show alignments to all cow chromosomes.