Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_C01.5 |
| Conread position: | 1-194 |
| Cow position: | chr17:22498731-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-442 |
| Cow position: | chr17:22452053-22451612 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 272 |
| Conread position: | 1-709 |
| Cow position: | chr17:22552188-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-713 |
| Cow position: | chr17:22452389-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 309 |
| Conread position: | 1-752 |
| Cow position: | chr17:22589858-22589112 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 476, 467 |
| Conread position: | 1-762 |
| Cow position: | chr17:22499319-22498558 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 305 |
| Conread position: | 1-764 |
| Cow position: | chr17:22552272-22551509 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-766 |
| Cow position: | chr17:22473164-22473923 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 38 |
| Conread position: | 1-768 |
| Cow position: | chr17:22552524-22551757 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-768 |
| Cow position: | chr17:22552692-22551925 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 382 |
| Conread position: | 1-768 |
| Cow position: | chr17:22552944-22552177 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-768 |
| Cow position: | chr17:22590026-22589259 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 651, 662 |
| Conread position: | 1-768 |
| Cow position: | chr17:22590194-22589427 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 386 |
| Conread position: | 2-768 |
| Cow position: | chr17:22552355-22551589 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-768 |
| Cow position: | chr17:22552439-22551673 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 2-768 |
| Cow position: | chr17:22552607-22551841 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 2-768 |
| Cow position: | chr17:22552775-22552009 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-768 |
| Cow position: | chr17:22552859-22552093 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 2-768 |
| Cow position: | chr17:22589941-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 311 |
| Conread position: | 2-768 |
| Cow position: | chr17:22590109-22589343 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 3-698 |
| Cow position: | chr17:22499235-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 220 |
| Conread position: | 4-616 |
| Cow position: | chr17:22499066-22498461 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 522 |
| Conread position: | 6-768 |
| Cow position: | chr17:22553107-22552345 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 10-768 |
| Cow position: | chr17:22499394-22498636 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 377 |
| Conread position: | 11-768 |
| Cow position: | chr17:22553018-22552261 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 375 |
| Conread position: | 11-768 |
| Cow position: | chr17:22590268-22589511 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 459 |
| Conread position: | 34-768 |
| Cow position: | chr17:22553163-22552429 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 57-768 |
| Cow position: | chr17:22590306-22589595 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 263 |
| Conread position: | 65-768 |
| Cow position: | chr17:22452409-22451706 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 142 |
| Conread position: | 121-768 |
| Cow position: | chr17:22452522-22451874 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 195 |
| Conread position: | 140-768 |
| Cow position: | chr17:22499431-22498804 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 148-768 |
| Cow position: | chr17:22452410-22451790 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 235 |
| Conread position: | 166-768 |
| Cow position: | chr17:22473242-22473841 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 20 |
Show alignments to all cow chromosomes.