Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_C01.5 |
| Conread position: | 1-308 |
| Cow position: | chr19:14948306-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 227, 221 |
| Conread position: | 1-440 |
| Cow position: | chr19:23597274-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-450 |
| Cow position: | chr19:20678364-20678809 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 1-546 |
| Cow position: | chr19:23597106-23597651 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 383 |
| Conread position: | 1-583 |
| Cow position: | chr19:43570231-43569653 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 221 |
| Conread position: | 1-606 |
| Cow position: | chr19:23649883-23650490 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 317 |
| Conread position: | 1-669 |
| Cow position: | chr19:14940401-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-685 |
| Cow position: | chr19:14959492-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 1-694 |
| Cow position: | chr19:20635640-20634950 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 383 |
| Conread position: | 1-724 |
| Cow position: | chr19:20677440-20678163 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 1-765 |
| Cow position: | chr19:23613677-23614441 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 224 |
| Conread position: | 1-765 |
| Cow position: | chr19:23649715-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 1-766 |
| Cow position: | chr19:14959576-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 138 |
| Conread position: | 1-768 |
| Cow position: | chr19:14940233-14941000 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-768 |
| Cow position: | chr19:14960314-14959565 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 161 |
| Conread position: | 1-768 |
| Cow position: | chr19:20677524-20678291 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 220 |
| Conread position: | 1-768 |
| Cow position: | chr19:20677776-20678543 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 219 |
| Conread position: | 1-768 |
| Cow position: | chr19:23613425-23614192 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-768 |
| Cow position: | chr19:23613509-23614278 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 138 |
| Conread position: | 1-768 |
| Cow position: | chr19:23613593-23614360 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 383 |
| Conread position: | 1-768 |
| Cow position: | chr19:23613761-23614528 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 572, 556 |
| Conread position: | 1-768 |
| Cow position: | chr19:23613929-23614696 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 144 |
| Conread position: | 1-768 |
| Cow position: | chr19:23614013-23614780 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 304 |
| Conread position: | 1-768 |
| Cow position: | chr19:23614097-23614864 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 383 |
| Conread position: | 1-768 |
| Cow position: | chr19:23614265-23615032 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 201 |
| Conread position: | 1-768 |
| Cow position: | chr19:23614349-23615116 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 303 |
| Conread position: | 2-465 |
| Cow position: | chr19:14948470-14948009 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 21 |
| Conread position: | 2-469 |
| Cow position: | chr19:20635555-20635088 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 304 |
| Conread position: | 2-522 |
| Cow position: | chr19:23597191-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 478, 468 |
| Conread position: | 2-606 |
| Cow position: | chr19:23614518-23615121 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 303 |
| Conread position: | 2-713 |
| Cow position: | chr19:23649800-23650509 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 2-720 |
| Cow position: | chr19:20677945-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 70 |
| Conread position: | 2-724 |
| Cow position: | chr19:20677861-20678583 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 154 |
| Conread position: | 2-753 |
| Cow position: | chr19:14940318-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-768 |
| Cow position: | chr19:23596942-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 91 |
| Conread position: | 2-768 |
| Cow position: | chr19:23613846-23614612 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 2-768 |
| Cow position: | chr19:23614182-23614948 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 378 |
| Conread position: | 2-768 |
| Cow position: | chr19:23649464-23650230 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 381 |
| Conread position: | 2-768 |
| Cow position: | chr19:23649548-23650314 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 195 |
| Conread position: | 2-768 |
| Cow position: | chr19:23649632-23650398 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-468 |
| Cow position: | chr19:14915956-14916418 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 296 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 14, 173 |
| Conread position: | 6-765 |
| Cow position: | chr19:14960477-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 616, 324 |
| Conread position: | 6-768 |
| Cow position: | chr19:14959738-14958992 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 87 |
| Conread position: | 7-768 |
| Cow position: | chr19:23596863-23597621 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 41 |
| Conread position: | 8-768 |
| Cow position: | chr19:14959652-14958908 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 11-694 |
| Cow position: | chr19:20678122-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 217 |
| Conread position: | 11-763 |
| Cow position: | chr19:43570379-43569641 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 95 |
| Conread position: | 11-768 |
| Cow position: | chr19:14939991-14940748 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 147 |
| Conread position: | 11-768 |
| Cow position: | chr19:14940075-14940832 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-768 |
| Cow position: | chr19:14940159-14940916 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-768 |
| Cow position: | chr19:23613351-23614108 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-768 |
| Cow position: | chr19:23649305-23650062 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 531, 540 |
| Conread position: | 11-768 |
| Cow position: | chr19:23649389-23650146 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 456 |
| Conread position: | 26-768 |
| Cow position: | chr19:43570447-43569718 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 454, 54 |
| Conread position: | 33-768 |
| Cow position: | chr19:20677640-20678375 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 353 |
| Conread position: | 56-761 |
| Cow position: | chr19:23596828-23597530 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 6 |
| Conread position: | 73-690 |
| Cow position: | chr19:23597094-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 575, 567 |
| Conread position: | 74-467 |
| Cow position: | chr19:14948484-14948092 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 80 |
| Conread position: | 79-705 |
| Cow position: | chr19:20635646-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 399 |
| Conread position: | 87-768 |
| Cow position: | chr19:23649297-23649978 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 231 |
| Conread position: | 92-768 |
| Cow position: | chr19:14939988-14940664 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 653, 648 |
| Conread position: | 94-768 |
| Cow position: | chr19:23613350-23614024 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 544, 551 |
| Conread position: | 158-635 |
| Cow position: | chr19:14948484-14948008 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 83 |
| Conread position: | 161-768 |
| Cow position: | chr19:23596849-23597453 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 184 |
| Conread position: | 163-765 |
| Cow position: | chr19:20635646-20635044 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 220 |
| Conread position: | 163-768 |
| Cow position: | chr19:23649289-23649894 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 214-768 |
| Cow position: | chr19:14960437-14959885 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 93 |
| Conread position: | 242-768 |
| Cow position: | chr19:14916029-14916538 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 327 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 245-768 |
| Cow position: | chr19:14939973-14940496 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 247-768 |
| Cow position: | chr19:20635646-20635125 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 324-768 |
| Cow position: | chr19:23649282-23649726 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 326-768 |
| Cow position: | chr19:14948484-14948043 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 80 |
| Conread position: | 337-768 |
| Cow position: | chr19:14915955-14916383 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 420-723 |
| Cow position: | chr19:20677439-20677742 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 497-768 |
| Cow position: | chr19:23613332-23613606 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 594-766 |
| Cow position: | chr19:14960477-14960305 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 139, 133 |
Show alignments to all cow chromosomes.