Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_C01.5 |
| Conread position: | 1-250 |
| Cow position: | chr2:82800189-82800438 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 1-689 |
| Cow position: | chr2:78755743-78756428 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 153 |
| Conread position: | 1-722 |
| Cow position: | chr2:86465509-86466228 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 428 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 64, 81 |
| Conread position: | 1-766 |
| Cow position: | chr2:78754823-78755586 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 308 |
| Conread position: | 1-768 |
| Cow position: | chr2:78754253-78755002 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 153 |
| Conread position: | 1-768 |
| Cow position: | chr2:78754503-78755254 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 1-768 |
| Cow position: | chr2:78754907-78755670 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 154 |
| Conread position: | 1-768 |
| Cow position: | chr2:78754991-78755754 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 70 |
| Conread position: | 2-459 |
| Cow position: | chr2:5874602-5874145 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 2-714 |
| Cow position: | chr2:86465174-86465886 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 2-724 |
| Cow position: | chr2:86465426-86466148 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 2-762 |
| Cow position: | chr2:82799686-82800446 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 379 |
| Conread position: | 2-768 |
| Cow position: | chr2:5875022-5874256 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 710, 721 |
| Conread position: | 2-768 |
| Cow position: | chr2:82799518-82800284 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 496, 503 |
| Conread position: | 2-768 |
| Cow position: | chr2:82799602-82800368 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 381 |
| Conread position: | 2-768 |
| Cow position: | chr2:86465342-86466108 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 253 |
| Conread position: | 4-768 |
| Cow position: | chr2:78755662-78756423 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 149 |
| Conread position: | 8-739 |
| Cow position: | chr2:5874848-5874117 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 8-768 |
| Cow position: | chr2:78754177-78754918 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 16 |
| Conread position: | 11-768 |
| Cow position: | chr2:86465267-86466024 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 24-762 |
| Cow position: | chr2:86465112-86465850 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 141 |
| Conread position: | 25-768 |
| Cow position: | chr2:82799457-82800200 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 197 |
| Conread position: | 26-768 |
| Cow position: | chr2:5875166-5874424 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 60-768 |
| Cow position: | chr2:82799408-82800116 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 65-768 |
| Cow position: | chr2:5875043-5874340 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 73 |
| Conread position: | 74-765 |
| Cow position: | chr2:78754812-78755502 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 404 |
| Conread position: | 83-463 |
| Cow position: | chr2:48689552-48689172 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 7 |
| Conread position: | 98-752 |
| Cow position: | chr2:78754101-78754746 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 66 |
| Conread position: | 106-768 |
| Cow position: | chr2:5875170-5874508 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 391 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 137, 132 |
| Conread position: | 177-768 |
| Cow position: | chr2:78754095-78754682 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 362 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 12, 44 |
| Conread position: | 189-720 |
| Cow position: | chr2:86465109-86465640 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 230-768 |
| Cow position: | chr2:86464982-86465520 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 315 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 128, 117 |
| Conread position: | 267-730 |
| Cow position: | chr2:5875178-5874714 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 434-753 |
| Cow position: | chr2:5875178-5874859 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 502-766 |
| Cow position: | chr2:48689553-48689290 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 56 |
Show alignments to all cow chromosomes.