Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_C01.5 |
| Conread position: | 1-249 |
| Cow position: | chr23:25723968-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 138, 148 |
| Conread position: | 1-285 |
| Cow position: | chr23:24626467-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 255, 0 |
| Conread position: | 1-306 |
| Cow position: | chr23:24522493-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 158, 153 |
| Conread position: | 1-355 |
| Cow position: | chr23:25626690-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-553 |
| Cow position: | chr23:24535970-24535417 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 520, 0 |
| Conread position: | 1-606 |
| Cow position: | chr23:25626441-25627043 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 94 |
| Conread position: | 1-768 |
| Cow position: | chr23:24560899-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 174 |
| Conread position: | 1-768 |
| Cow position: | chr23:25626273-25627037 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 262 |
| Conread position: | 2-269 |
| Cow position: | chr23:24654109-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-339 |
| Cow position: | chr23:25724051-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-353 |
| Cow position: | chr23:25660395-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 306, 316 |
| Conread position: | 2-418 |
| Cow position: | chr23:25698496-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 147, 137 |
| Conread position: | 2-469 |
| Cow position: | chr23:25660227-25660694 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 147 |
| Conread position: | 2-477 |
| Cow position: | chr23:25626607-25627083 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 2-618 |
| Cow position: | chr23:24639460-24640076 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 195 |
| Conread position: | 2-636 |
| Cow position: | chr23:24547254-24546621 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 615, 0 |
| Conread position: | 2-688 |
| Cow position: | chr23:25626358-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 133 |
| Conread position: | 2-719 |
| Cow position: | chr23:24522408-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 444 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 157, 152 |
| Conread position: | 2-726 |
| Cow position: | chr23:24560814-24560091 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 381 |
| Conread position: | 2-768 |
| Cow position: | chr23:24639292-24640058 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 97 |
| Conread position: | 2-768 |
| Cow position: | chr23:25626106-25626869 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 428 |
| Conread position: | 4-454 |
| Cow position: | chr23:24626302-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 373 |
| Conread position: | 4-636 |
| Cow position: | chr23:24536051-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 304 |
| Conread position: | 5-353 |
| Cow position: | chr23:24654024-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 5-384 |
| Cow position: | chr23:24522572-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 223, 7 |
| Conread position: | 6-676 |
| Cow position: | chr23:24547334-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-768 |
| Cow position: | chr23:25626026-25626785 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 727, 555 |
| Conread position: | 11-586 |
| Cow position: | chr23:25698655-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 347 |
| Conread position: | 12-768 |
| Cow position: | chr23:25625950-25626701 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 13-700 |
| Cow position: | chr23:24639387-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 20-768 |
| Cow position: | chr23:24639226-24639974 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-417 |
| Cow position: | chr23:25724116-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 288 |
| Conread position: | 28-538 |
| Cow position: | chr23:24626245-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 59-558 |
| Cow position: | chr23:25660200-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 167 |
| Conread position: | 60-469 |
| Cow position: | chr23:24522602-24522193 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 74-670 |
| Cow position: | chr23:25698676-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 364 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 74-768 |
| Cow position: | chr23:24560910-24560216 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 61 |
| Conread position: | 78-468 |
| Cow position: | chr23:25724143-25723753 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 253 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 87-441 |
| Cow position: | chr23:24654024-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 88-726 |
| Cow position: | chr23:24522823-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 90-759 |
| Cow position: | chr23:24547334-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 110-689 |
| Cow position: | chr23:25660167-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 195 |
| Conread position: | 110-727 |
| Cow position: | chr23:24536029-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 579, 0 |
| Conread position: | 153-754 |
| Cow position: | chr23:25698681-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 70 |
| Conread position: | 159-768 |
| Cow position: | chr23:24639197-24639806 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 173-616 |
| Cow position: | chr23:24626303-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 204 |
| Conread position: | 173-762 |
| Cow position: | chr23:25660146-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 178-768 |
| Cow position: | chr23:24522815-24522230 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 28 |
| Conread position: | 180-521 |
| Cow position: | chr23:24654034-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 5, 129 |
| Conread position: | 203-765 |
| Cow position: | chr23:24536020-24535458 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 117 |
| Conread position: | 207-585 |
| Cow position: | chr23:25724099-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 15, 101 |
| Conread position: | 215-759 |
| Cow position: | chr23:24626189-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 55 |
| Conread position: | 223-706 |
| Cow position: | chr23:24626269-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 227-768 |
| Cow position: | chr23:24547281-24546740 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 156 |
| Conread position: | 240-768 |
| Cow position: | chr23:24547352-24546824 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 246-698 |
| Cow position: | chr23:25724143-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 163, 140 |
| Conread position: | 257-768 |
| Cow position: | chr23:24536050-24535539 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-768 |
| Cow position: | chr23:25660146-25660657 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 325-768 |
| Cow position: | chr23:25698677-25698234 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 356-709 |
| Cow position: | chr23:24654043-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 361-759 |
| Cow position: | chr23:25724112-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 120, 114 |
| Conread position: | 370-768 |
| Cow position: | chr23:24626251-24626646 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 401-759 |
| Cow position: | chr23:25698685-25698327 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 414-768 |
| Cow position: | chr23:25724143-25723789 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 99, 84 |
| Conread position: | 439-764 |
| Cow position: | chr23:24654042-24654367 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 512-768 |
| Cow position: | chr23:24654030-24654287 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 589-759 |
| Cow position: | chr23:24521986-24521817 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
Show alignments to all cow chromosomes.